List of usage examples for java.util TreeSet iterator
public Iterator<E> iterator()
From source file:org.bigtextml.topics.ParallelTopicModel.java
public String displayTopWords(int numWords, boolean usingNewLines) { StringBuilder out = new StringBuilder(); ArrayList<TreeSet<IDSorter>> topicSortedWords = getSortedWords(); // Print results for each topic for (int topic = 0; topic < numTopics; topic++) { TreeSet<IDSorter> sortedWords = topicSortedWords.get(topic); int word = 1; Iterator<IDSorter> iterator = sortedWords.iterator(); if (usingNewLines) { out.append(topic + "\t" + formatter.format(alpha[topic]) + "\n"); while (iterator.hasNext() && word < numWords) { IDSorter info = iterator.next(); out.append(//from w ww . ja v a 2 s . c o m alphabet.lookupObject(info.getID()) + "\t" + formatter.format(info.getWeight()) + "\n"); word++; } } else { out.append(topic + "\t" + formatter.format(alpha[topic]) + "\t"); while (iterator.hasNext() && word < numWords) { IDSorter info = iterator.next(); out.append(alphabet.lookupObject(info.getID()) + " "); word++; } out.append("\n"); } } return out.toString(); }
From source file:org.apache.myfaces.trinidadbuild.plugin.tagdoc.TagdocReport.java
private void _writeComponentAttributes(Writer out, ComponentBean bean) throws IOException { // Sort the names TreeSet<String> attributes = new TreeSet<String>(); Iterator<PropertyBean> attrs = bean.properties(true); attrs = new FilteredIterator(attrs, new NonHiddenFilter()); while (attrs.hasNext()) { PropertyBean property = attrs.next(); if (!property.isTagAttributeExcluded()) attributes.add(property.getPropertyName()); }/* www.j ava 2 s . c o m*/ // Now get a list of PropertyBeans List<PropertyBean> list = new ArrayList<PropertyBean>(); Iterator<String> iter = attributes.iterator(); while (iter.hasNext()) { String attrName = iter.next(); list.add(bean.findProperty(attrName, true)); } TreeSet<String> groups = new TreeSet<String>(new GroupComparator()); /* No current support for grouping // Make sure "null" is the representative for unknown groups Iterator iter = attributes.iterator(); while (iter.hasNext()) { String group = ((AttributeDoc) iter.next()).group; if (group != null) groups.add(group); } */ _writeComponentAttributes(out, list.iterator(), bean.getComponentClass(), groups.isEmpty() ? null : "Ungrouped"); Iterator<String> groupIter = groups.iterator(); while (groupIter.hasNext()) { _writeComponentAttributes(out, list.iterator(), bean.getComponentClass(), groupIter.next()); } }
From source file:org.atricore.idbus.kernel.main.databinding.JAXBUtils.java
/** * Create a JAXBContext using the contextPackages * * @param contextPackages Set<String> * @param cl ClassLoader/*from ww w.jav a 2 s . c om*/ * @param forceArrays boolean (true if JAXBContext must include all arrays) * @param properties Map of properties for the JAXBContext.newInstance creation method * @param classRefs List of class references * @return JAXBContextValue (JAXBContext + constructionType) * @throws javax.xml.bind.JAXBException */ private static JAXBContextValue createJAXBContextValue(TreeSet<String> contextPackages, ClassLoader cl, boolean forceArrays, Map<String, ?> properties, List<String> classRefs) throws JAXBException { JAXBContextValue contextValue = null; if (log.isDebugEnabled()) { log.debug("Following packages are in this batch of getJAXBContext() :"); for (String pkg : contextPackages) { log.debug(pkg); } log.debug("This classloader will be used to construct the JAXBContext" + cl); } // The contextPackages is a set of package names that are constructed using PackageSetBuilder. // PackageSetBuilder gets the packages names from various sources. // a) It walks the various annotations on the WebService collecting package names. // b) It walks the wsdl/schemas and builds package names for each target namespace. // // The combination of these two sources should produce all of the package names. // ------------- // Note that (b) is necessary for the following case: // An operation has a parameter named BASE. // Object DERIVED is an extension of BASE and is defined in a different package/schema. // In this case, there will not be any annotations on the WebService that reference DERIVED. // The only way to find the package for DERIVED is to walk the schemas. // ------------- Iterator<String> it = contextPackages.iterator(); while (it.hasNext()) { String p = it.next(); // Don't consider java and javax packages // REVIEW: We might have to refine this if (p.startsWith("javax.xml.ws.wsaddressing")) { continue; } if (p.startsWith("java.") || p.startsWith("javax.")) { it.remove(); } } // There are two ways to construct the context. // 1) USE A CONTEXTPATH, which is a string containing // all of the packages separated by colons. // 2) USE A CLASS[], which is an array of all of the classes // involved in the marshal/unmarshal. // // There are pros/cons with both approaches. // USE A CONTEXTPATH: // Pros: preferred way of doing this. // performant // most dynamic // Cons: Each package in context path must have an ObjectFactory // // // USE CLASS[]: // Pros: Doesn't require ObjectFactory in each package // Cons: Hard to set up, must account for JAX-WS classes, etc. // Does not work if arrays of classes are needed // slower // // The following code attempts to build a context path. It then // choose one of the two constructions above (prefer USE A CONTEXT_PATH) // // The packages are examined to see if they have ObjectFactory/package-info classes. // Invalid packages are removed from the list it = contextPackages.iterator(); boolean contextConstruction = (!forceArrays); boolean isJAXBFound = false; while (it.hasNext()) { String p = it.next(); // See if this package has an ObjectFactory or package-info if (checkPackage(p, cl)) { // Flow to here indicates package can be used for CONTEXT construction isJAXBFound = true; if (log.isDebugEnabled()) { log.debug("Package " + p + " contains an ObjectFactory or package-info class."); } } else { // Flow to here indicates that the package is not valid for context construction. // Perhaps the package is invalid. if (log.isDebugEnabled()) { log.debug("Package " + p + " does not contain an ObjectFactory or package-info class. Searching for JAXB classes"); } List<Class> classes = null; classes = getAllClassesFromPackage(p, cl); if (classes == null || classes.size() == 0) { if (log.isDebugEnabled()) { log.debug("Package " + p + " does not have any JAXB classes. It is removed from the JAXB context path."); } it.remove(); } else { // Classes are found in the package. We cannot use the CONTEXT construction contextConstruction = false; if (log.isDebugEnabled()) { log.debug("Package " + p + " does not contain ObjectFactory, but it does contain other JAXB classes."); } } } } if (!isJAXBFound) { if (log.isDebugEnabled()) { log.debug("ObjectFactory & package-info are not found in package hierachy"); } } // The code above may have removed some packages from the list. // Retry our lookup with the updated list if (contextConstruction) { if (log.isDebugEnabled()) { log.debug("Recheck Cache Start: Some packages have been removed from the list. Rechecking cache."); } String key = contextPackages.toString(); ConcurrentHashMap<ClassLoader, JAXBContextValue> innerMap = null; SoftReference<ConcurrentHashMap<ClassLoader, JAXBContextValue>> softRef = jaxbMap.get(key); if (softRef != null) { innerMap = softRef.get(); } if (innerMap != null) { contextValue = innerMap.get(cl); if (forceArrays && contextValue != null && contextValue.constructionType != JAXBUtils.CONSTRUCTION_TYPE.BY_CLASS_ARRAY_PLUS_ARRAYS) { if (log.isDebugEnabled()) { log.debug("Found a JAXBContextValue with constructionType=" + contextValue.constructionType + " but the caller requested a JAXBContext " + " that includes arrays. A new JAXBContext will be built"); } contextValue = null; } if (contextValue != null) { if (log.isDebugEnabled()) { log.debug("Successfully found JAXBContext with updated context list:" + contextValue.jaxbContext.toString()); } return contextValue; } } if (log.isDebugEnabled()) { log.debug("Recheck Cache End: Did not find a JAXBContext. Will build a new JAXBContext."); } } // CONTEXT construction if (contextConstruction) { if (log.isDebugEnabled()) { log.debug("Try building a JAXBContext using the packages only."); } JAXBContext context = createJAXBContextUsingContextPath(contextPackages, cl, classRefs); if (context != null) { contextValue = new JAXBContextValue(context, CONSTRUCTION_TYPE.BY_CONTEXT_PATH); } if (log.isDebugEnabled()) { log.debug("Building a JAXBContext with packages only success=" + (contextValue != null)); } } // CLASS construction if (contextValue == null) { if (log.isDebugEnabled()) { log.debug("Try building a JAXBContext using a list of classes."); log.debug("Start finding classes"); } it = contextPackages.iterator(); List<Class> fullList = new ArrayList<Class>(); while (it.hasNext()) { String pkg = it.next(); fullList.addAll(getAllClassesFromPackage(pkg, cl)); } //Lets add all common array classes addCommonArrayClasses(fullList); Class[] classArray = fullList.toArray(new Class[0]); if (log.isDebugEnabled()) { log.debug("End finding classes"); } JAXBContext context = JAXBContext_newInstance(classArray, cl, properties, classRefs); if (context != null) { if (forceArrays) { contextValue = new JAXBContextValue(context, CONSTRUCTION_TYPE.BY_CLASS_ARRAY_PLUS_ARRAYS); } else { contextValue = new JAXBContextValue(context, CONSTRUCTION_TYPE.BY_CLASS_ARRAY); } } } if (log.isDebugEnabled()) { log.debug("Successfully created JAXBContext " + contextValue.jaxbContext.toString()); } return contextValue; }
From source file:org.apache.axis2.jaxws.message.databinding.JAXBUtils.java
/** * Create a JAXBContext using the contextPackages * * @param contextPackages Set<String> * @param cl ClassLoader/* ww w . j av a 2s . c om*/ * @param forceArrays boolean (true if JAXBContext must include all arrays) * @param properties Map of properties for the JAXBContext.newInstance creation method * @param classRefs List of class references * @return JAXBContextValue (JAXBContext + constructionType) * @throws JAXBException */ private static JAXBContextValue createJAXBContextValue(TreeSet<String> contextPackages, ClassLoader cl, boolean forceArrays, Map<String, ?> properties, List<String> classRefs) throws JAXBException { JAXBContextValue contextValue = null; if (log.isDebugEnabled()) { log.debug("Following packages are in this batch of getJAXBContext() :"); for (String pkg : contextPackages) { log.debug(pkg); } log.debug("This classloader will be used to construct the JAXBContext" + cl); } // The contextPackages is a set of package names that are constructed using PackageSetBuilder. // PackageSetBuilder gets the packages names from various sources. // a) It walks the various annotations on the WebService collecting package names. // b) It walks the wsdl/schemas and builds package names for each target namespace. // // The combination of these two sources should produce all of the package names. // ------------- // Note that (b) is necessary for the following case: // An operation has a parameter named BASE. // Object DERIVED is an extension of BASE and is defined in a different package/schema. // In this case, there will not be any annotations on the WebService that reference DERIVED. // The only way to find the package for DERIVED is to walk the schemas. // ------------- Iterator<String> it = contextPackages.iterator(); while (it.hasNext()) { String p = it.next(); // Don't consider java and javax packages // REVIEW: We might have to refine this if (p.startsWith("javax.xml.ws.wsaddressing")) { continue; } if (p.startsWith("java.") || p.startsWith("javax.")) { it.remove(); } } // There are two ways to construct the context. // 1) USE A CONTEXTPATH, which is a string containing // all of the packages separated by colons. // 2) USE A CLASS[], which is an array of all of the classes // involved in the marshal/unmarshal. // // There are pros/cons with both approaches. // USE A CONTEXTPATH: // Pros: preferred way of doing this. // performant // most dynamic // Cons: Each package in context path must have an ObjectFactory // // // USE CLASS[]: // Pros: Doesn't require ObjectFactory in each package // Cons: Hard to set up, must account for JAX-WS classes, etc. // Does not work if arrays of classes are needed // slower // // The following code attempts to build a context path. It then // choose one of the two constructions above (prefer USE A CONTEXT_PATH) // // The packages are examined to see if they have ObjectFactory/package-info classes. // Invalid packages are removed from the list it = contextPackages.iterator(); boolean contextConstruction = (!forceArrays); boolean isJAXBFound = false; while (it.hasNext()) { String p = it.next(); // See if this package has an ObjectFactory or package-info if (checkPackage(p, cl)) { // Flow to here indicates package can be used for CONTEXT construction isJAXBFound = true; if (log.isDebugEnabled()) { log.debug("Package " + p + " contains an ObjectFactory or package-info class."); } } else { // Flow to here indicates that the package is not valid for context construction. // Perhaps the package is invalid. if (log.isDebugEnabled()) { log.debug("Package " + p + " does not contain an ObjectFactory or package-info class. Searching for JAXB classes"); } List<Class> classes = null; classes = getAllClassesFromPackage(p, cl); if (classes == null || classes.size() == 0) { if (log.isDebugEnabled()) { log.debug("Package " + p + " does not have any JAXB classes. It is removed from the JAXB context path."); } it.remove(); } else { // Classes are found in the package. We cannot use the CONTEXT construction contextConstruction = false; if (log.isDebugEnabled()) { log.debug("Package " + p + " does not contain ObjectFactory, but it does contain other JAXB classes."); } } } } if (!isJAXBFound) { if (log.isDebugEnabled()) { log.debug("ObjectFactory & package-info are not found in package hierachy"); } } // The code above may have removed some packages from the list. // Retry our lookup with the updated list if (contextConstruction) { if (log.isDebugEnabled()) { log.debug("Recheck Cache Start: Some packages have been removed from the list. Rechecking cache."); } String key = contextPackages.toString(); ConcurrentHashMap<ClassLoader, JAXBContextValue> innerMap = null; SoftReference<ConcurrentHashMap<ClassLoader, JAXBContextValue>> softRef = jaxbMap.get(key); if (softRef != null) { innerMap = softRef.get(); } if (innerMap != null) { contextValue = innerMap.get(cl); if (forceArrays && contextValue != null && contextValue.constructionType != JAXBUtils.CONSTRUCTION_TYPE.BY_CLASS_ARRAY_PLUS_ARRAYS) { if (log.isDebugEnabled()) { log.debug("Found a JAXBContextValue with constructionType=" + contextValue.constructionType + " but the caller requested a JAXBContext " + " that includes arrays. A new JAXBContext will be built"); } contextValue = null; } if (contextValue != null) { if (log.isDebugEnabled()) { log.debug("Successfully found JAXBContext with updated context list:" + contextValue.jaxbContext.toString()); } return contextValue; } } if (log.isDebugEnabled()) { log.debug("Recheck Cache End: Did not find a JAXBContext. Will build a new JAXBContext."); } } // CONTEXT construction if (contextConstruction) { if (log.isDebugEnabled()) { log.debug("Try building a JAXBContext using the packages only."); } JAXBContext context = createJAXBContextUsingContextPath(contextPackages, cl, classRefs); if (context != null) { contextValue = new JAXBContextValue(context, CONSTRUCTION_TYPE.BY_CONTEXT_PATH); } if (log.isDebugEnabled()) { log.debug("Building a JAXBContext with packages only success=" + (contextValue != null)); } } // CLASS construction if (contextValue == null) { if (log.isDebugEnabled()) { log.debug("Try building a JAXBContext using a list of classes."); log.debug("Start finding classes"); } it = contextPackages.iterator(); List<Class> fullList = new ArrayList<Class>(); while (it.hasNext()) { String pkg = it.next(); fullList.addAll(getAllClassesFromPackage(pkg, cl)); } //Lets add all common array classes addCommonArrayClasses(fullList); Class[] classArray = fullList.toArray(new Class[0]); if (log.isDebugEnabled()) { log.debug("End finding classes"); } JAXBContext context = JAXBContext_newInstance(classArray, cl, properties, classRefs); if (context != null) { if (forceArrays) { contextValue = new JAXBContextValue(context, CONSTRUCTION_TYPE.BY_CLASS_ARRAY_PLUS_ARRAYS); } else { contextValue = new JAXBContextValue(context, CONSTRUCTION_TYPE.BY_CLASS_ARRAY); } } } if (log.isDebugEnabled()) { log.debug("Successfully created JAXBContext " + contextValue.jaxbContext.toString()); } return contextValue; }
From source file:org.codehaus.enunciate.modules.jersey.JerseyDeploymentModule.java
@Override protected void doBuild() throws EnunciateException, IOException { super.doBuild(); File webappDir = getBuildDir(); webappDir.mkdirs();/* w w w. ja v a2 s . com*/ File webinf = new File(webappDir, "WEB-INF"); File webinfClasses = new File(webinf, "classes"); getEnunciate().copyFile(new File(getGenerateDir(), "jaxrs-providers.list"), new File(webinfClasses, "jaxrs-providers.list")); getEnunciate().copyFile(new File(getGenerateDir(), "jaxrs-root-resources.list"), new File(webinfClasses, "jaxrs-root-resources.list")); getEnunciate().copyFile(new File(getGenerateDir(), "jaxrs-jaxb-types.list"), new File(webinfClasses, "jaxrs-jaxb-types.list")); getEnunciate().copyFile(new File(getGenerateDir(), "media-type-mappings.properties"), new File(webinfClasses, "media-type-mappings.properties")); getEnunciate().copyFile(new File(getGenerateDir(), "ns2prefix.properties"), new File(webinfClasses, "ns2prefix.properties")); BaseWebAppFragment webappFragment = new BaseWebAppFragment(getName()); webappFragment.setBaseDir(webappDir); WebAppComponent servletComponent = new WebAppComponent(); servletComponent.setName("jersey"); servletComponent.setClassname(EnunciateJerseyServletContainer.class.getName()); TreeMap<String, String> initParams = new TreeMap<String, String>(); initParams.putAll(getServletInitParams()); if (!isUsePathBasedConneg()) { initParams.put(JerseyAdaptedHttpServletRequest.FEATURE_PATH_BASED_CONNEG, Boolean.FALSE.toString()); } if (isUseSubcontext()) { initParams.put(JerseyAdaptedHttpServletRequest.PROPERTY_SERVLET_PATH, getRestSubcontext()); } if (getResourceProviderFactory() != null) { initParams.put(JerseyAdaptedHttpServletRequest.PROPERTY_RESOURCE_PROVIDER_FACTORY, getResourceProviderFactory()); } if (getApplicationClass() != null) { initParams.put("javax.ws.rs.Application", getApplicationClass()); } if (getLoadOnStartup() != null) { servletComponent.setLoadOnStartup(getLoadOnStartup()); } servletComponent.setInitParams(initParams); TreeSet<String> urlMappings = new TreeSet<String>(); for (RootResource rootResource : getModel().getRootResources()) { for (ResourceMethod resourceMethod : rootResource.getResourceMethods(true)) { String resourceMethodPattern = resourceMethod.getServletPattern(); for (Set<String> subcontextList : ((Map<String, Set<String>>) resourceMethod.getMetaData() .get("subcontexts")).values()) { for (String subcontext : subcontextList) { String servletPattern; if ("".equals(subcontext)) { servletPattern = isUseWildcardServletMapping() ? "/*" : resourceMethodPattern; } else { servletPattern = isUseWildcardServletMapping() ? subcontext + "/*" : subcontext + resourceMethodPattern; } if (urlMappings.add(servletPattern)) { debug("Resource method %s of resource %s to be made accessible by servlet pattern %s.", resourceMethod.getSimpleName(), resourceMethod.getParent().getQualifiedName(), servletPattern); } } } } } if (urlMappings.contains("/*")) { urlMappings.clear(); urlMappings.add("/*"); } else { Iterator<String> iterator = urlMappings.iterator(); while (iterator.hasNext()) { String mapping = iterator.next(); if (!mapping.endsWith("/*") && urlMappings.contains(mapping + "/*")) { iterator.remove(); } } } servletComponent.setUrlMappings(urlMappings); webappFragment.setServlets(Arrays.asList(servletComponent)); getEnunciate().addWebAppFragment(webappFragment); }
From source file:ca.sqlpower.architect.diff.CompareSQL.java
/** * Creates a List of DiffChunks that describe the differences between the * columns of the given tables./* w w w .j a v a2 s.c o m*/ * * @param sourceTable The "left side" for the comparison. If null, then all columns * in the target table will be considered obsolete. * @param targetTable The "right side" for the comparison. If null, then all columns * in the source table will be considered new. * @throws SQLObjectException If the getColumns() methods of the source or target * tables run into trouble. */ private List<DiffChunk<SQLObject>> generateColumnDiffs(SQLTable sourceTable, SQLTable targetTable) throws SQLObjectException { TreeSet<SQLColumn> sourceColumnList; TreeSet<SQLColumn> targetColumnList; Iterator<SQLColumn> sourceColIter; Iterator<SQLColumn> targetColIter; SQLColumn sourceColumn; SQLColumn targetColumn; boolean sourceColContinue; boolean targetColContinue; boolean keyChangeFlag = false; sourceColumnList = new TreeSet<SQLColumn>(getObjectComparator()); targetColumnList = new TreeSet<SQLColumn>(getObjectComparator()); sourceColContinue = false; targetColContinue = false; sourceColIter = null; targetColIter = null; sourceColumn = null; targetColumn = null; // We store the diffs in here, then return this list List<DiffChunk<SQLObject>> diffs = new ArrayList<DiffChunk<SQLObject>>(); if (sourceTable != null) { sourceColumnList.addAll(sourceTable.getColumns()); } if (targetTable != null) { targetColumnList.addAll(targetTable.getColumns()); } if (sourceColumnList.size() == 0) { sourceColumnList = null; sourceColContinue = false; } else { sourceColIter = sourceColumnList.iterator(); sourceColumn = sourceColIter.next(); sourceColContinue = true; } if (targetColumnList.size() == 0) { targetColumnList = null; targetColContinue = false; } else { targetColIter = targetColumnList.iterator(); targetColumn = targetColIter.next(); targetColContinue = true; } while (sourceColContinue && targetColContinue) { int compareResult = getObjectComparator().compare(sourceColumn, targetColumn); // Comparing Columns if (compareResult < 0) { diffs.add(new DiffChunk<SQLObject>(sourceColumn, DiffType.LEFTONLY)); logger.debug("The source column is " + sourceColumn); if (sourceColumn.isPrimaryKey()) { keyChangeFlag = true; } if (sourceColIter.hasNext()) { sourceColumn = sourceColIter.next(); } else { sourceColContinue = false; } } // Comparing Columns if (compareResult > 0) { diffs.add(new DiffChunk<SQLObject>(targetColumn, DiffType.RIGHTONLY)); logger.debug("The target column is " + targetColumn); if (targetColumn.isPrimaryKey()) { keyChangeFlag = true; } if (targetColIter.hasNext()) { targetColumn = targetColIter.next(); } else { targetColContinue = false; } } // Comparing Columns if (compareResult == 0) { if (targetColumn.isPrimaryKey() != sourceColumn.isPrimaryKey()) { keyChangeFlag = true; //diffs.add(new DiffChunk<SQLObject>(targetColumn, DiffType.KEY_CHANGED)); } List<PropertyChange> changes = generatePropertyChanges(sourceColumn, targetColumn); if (changes.size() > 0) { DiffChunk<SQLObject> chunk = null; if (nameComparator.compare(sourceColumn, targetColumn) != 0) { chunk = new DiffChunk<SQLObject>(targetColumn, DiffType.NAME_CHANGED); chunk.setOriginalData(sourceColumn); } else if (ArchitectUtils.columnsDiffer(targetColumn, sourceColumn)) { // Make sure the changes are worthy of a SQL script generation: if (logger.isDebugEnabled()) { logger.debug("Column " + sourceColumn.getName() + " differs!"); logger.debug(String.format(" Type: %10d %10d", targetColumn.getType(), sourceColumn.getType())); logger.debug(String.format(" Precision: %10d %10d", targetColumn.getPrecision(), sourceColumn.getPrecision())); logger.debug(String.format(" Scale: %10d %10d", targetColumn.getScale(), sourceColumn.getScale())); logger.debug(String.format(" Nullable: %10d %10d", targetColumn.getNullable(), sourceColumn.getNullable())); } chunk = new DiffChunk<SQLObject>(targetColumn, DiffType.SQL_MODIFIED); } else { chunk = new DiffChunk<SQLObject>(targetColumn, DiffType.MODIFIED); } for (PropertyChange change : changes) { chunk.addPropertyChange(change); } diffs.add(chunk); } else { if (!suppressSimilarities) { diffs.add(new DiffChunk<SQLObject>(sourceColumn, DiffType.SAME)); } } if (targetColIter.hasNext()) { targetColumn = targetColIter.next(); } else { targetColContinue = false; } if (sourceColIter.hasNext()) { sourceColumn = sourceColIter.next(); } else { sourceColContinue = false; } } } while (sourceColContinue) { diffs.add(new DiffChunk<SQLObject>(sourceColumn, DiffType.LEFTONLY)); if (sourceColIter.hasNext()) { sourceColumn = sourceColIter.next(); } else { sourceColContinue = false; } } while (targetColContinue) { diffs.add(new DiffChunk<SQLObject>(targetColumn, DiffType.RIGHTONLY)); if (targetColIter.hasNext()) { targetColumn = targetColIter.next(); } else { targetColContinue = false; } } if (keyChangeFlag) { if (sourceTable.getPkSize() > 0) { diffs.add(new DiffChunk<SQLObject>(sourceTable, DiffType.DROP_KEY)); } diffs.add(new DiffChunk<SQLObject>(targetTable, DiffType.KEY_CHANGED)); } return diffs; }
From source file:net.sf.mzmine.modules.peaklistmethods.alignment.ransac.RansacAlignerTask.java
/** * //from w w w .j a va2 s .c om * @param peakList * @return */ private HashMap<PeakListRow, PeakListRow> getAlignmentMap(PeakList peakList) { // Create a table of mappings for best scores HashMap<PeakListRow, PeakListRow> alignmentMapping = new HashMap<PeakListRow, PeakListRow>(); if (alignedPeakList.getNumberOfRows() < 1) { return alignmentMapping; } // Create a sorted set of scores matching TreeSet<RowVsRowScore> scoreSet = new TreeSet<RowVsRowScore>(); // RANSAC algorithm List<AlignStructMol> list = ransacPeakLists(alignedPeakList, peakList); PolynomialFunction function = this.getPolynomialFunction(list); PeakListRow allRows[] = peakList.getRows(); for (PeakListRow row : allRows) { // Calculate limits for a row with which the row can be aligned Range mzRange = mzTolerance.getToleranceRange(row.getAverageMZ()); double rt; try { rt = function.value(row.getAverageRT()); } catch (NullPointerException e) { rt = row.getAverageRT(); } if (Double.isNaN(rt) || rt == -1) { rt = row.getAverageRT(); } Range rtRange = rtToleranceAfter.getToleranceRange(rt); // Get all rows of the aligned peaklist within parameter limits PeakListRow candidateRows[] = alignedPeakList.getRowsInsideScanAndMZRange(rtRange, mzRange); for (PeakListRow candidate : candidateRows) { RowVsRowScore score; if (sameChargeRequired && (!PeakUtils.compareChargeState(row, candidate))) { continue; } try { score = new RowVsRowScore(row, candidate, mzRange.getSize() / 2, rtRange.getSize() / 2, rt); scoreSet.add(score); errorMessage = score.getErrorMessage(); } catch (Exception e) { e.printStackTrace(); setStatus(TaskStatus.ERROR); return null; } } processedRows++; } // Iterate scores by descending order Iterator<RowVsRowScore> scoreIterator = scoreSet.iterator(); while (scoreIterator.hasNext()) { RowVsRowScore score = scoreIterator.next(); // Check if the row is already mapped if (alignmentMapping.containsKey(score.getPeakListRow())) { continue; } // Check if the aligned row is already filled if (alignmentMapping.containsValue(score.getAlignedRow())) { continue; } alignmentMapping.put(score.getPeakListRow(), score.getAlignedRow()); } return alignmentMapping; }
From source file:org.pentaho.platform.web.servlet.AdhocWebService.java
public void searchTable(final IParameterProvider parameterProvider, final OutputStream outputStream, final IPentahoSession userSession, final boolean wrapWithSoap) throws IOException { String domainId = (String) parameterProvider.getParameter("modelId"); //$NON-NLS-1$ String modelId = (String) parameterProvider.getParameter("viewId"); //$NON-NLS-1$ String tableId = (String) parameterProvider.getParameter("tableId"); //$NON-NLS-1$ String columnId = (String) parameterProvider.getParameter("columnId"); //$NON-NLS-1$ String searchStr = (String) parameterProvider.getParameter("searchStr"); //$NON-NLS-1$ ByteArrayOutputStream xactionOutputStream = new ByteArrayOutputStream(); createMQLQueryActionSequence(domainId, modelId, tableId, columnId, searchStr, xactionOutputStream, userSession.getName());/* w w w . ja v a 2 s . c o m*/ Document document = DocumentHelper.createDocument(); document.setXMLEncoding(LocaleHelper.getSystemEncoding()); Element resultsElement = document.addElement("results"); //$NON-NLS-1$ IRuntimeContext runtimeContext = AdhocWebService.executeActionSequence( xactionOutputStream.toString(LocaleHelper.getSystemEncoding()), "mqlQuery.xaction", //$NON-NLS-1$ new SimpleParameterProvider(), userSession, new ByteArrayOutputStream()); if (runtimeContext.getStatus() == IRuntimeContext.RUNTIME_STATUS_SUCCESS) { IActionParameter actionParameter = runtimeContext.getOutputParameter("query_result"); //$NON-NLS-1$ IPentahoResultSet pentahoResultSet = actionParameter.getValueAsResultSet(); TreeSet treeSet = new TreeSet(); for (int i = 0; i < pentahoResultSet.getRowCount(); i++) { Object[] rowValues = pentahoResultSet.getDataRow(i); if (rowValues[0] != null) { treeSet.add(rowValues[0]); } } for (Iterator iterator = treeSet.iterator(); iterator.hasNext();) { resultsElement.addElement("row").setText(iterator.next().toString()); //$NON-NLS-1$ } runtimeContext.dispose(); } WebServiceUtil.writeString(outputStream, document.asXML(), wrapWithSoap); }
From source file:com.cyberway.issue.crawler.admin.StatisticsTracker.java
protected Iterator<SeedRecord> getSeedRecordsSortedByStatusCode(Iterator<String> i) { TreeSet<SeedRecord> sortedSet = new TreeSet<SeedRecord>(new Comparator<SeedRecord>() { public int compare(SeedRecord sr1, SeedRecord sr2) { int code1 = sr1.getStatusCode(); int code2 = sr2.getStatusCode(); if (code1 == code2) { // If the values are equal, sort by URIs. return sr1.getUri().compareTo(sr2.getUri()); }/*from w w w . j a v a 2 s. co m*/ // mirror and shift the nubmer line so as to // place zero at the beginning, then all negatives // in order of ascending absolute value, then all // positives descending code1 = -code1 - Integer.MAX_VALUE; code2 = -code2 - Integer.MAX_VALUE; return new Integer(code1).compareTo(new Integer(code2)); } }); while (i.hasNext()) { String seed = i.next(); SeedRecord sr = (SeedRecord) processedSeedsRecords.get(seed); if (sr == null) { sr = new SeedRecord(seed, SEED_DISPOSITION_NOT_PROCESSED); processedSeedsRecords.put(seed, sr); } sortedSet.add(sr); } return sortedSet.iterator(); }
From source file:org.codehaus.enunciate.modules.jboss.JBossDeploymentModule.java
@Override protected void doBuild() throws EnunciateException, IOException { super.doBuild(); BaseWebAppFragment webappFragment = new BaseWebAppFragment(getName()); HashMap<String, String> jbossContextParameters = new HashMap<String, String>(); webappFragment.setContextParameters(jbossContextParameters); ArrayList<WebAppComponent> servlets = new ArrayList<WebAppComponent>(); if (this.enableJaxws) { for (WsdlInfo wsdlInfo : getModelInternal().getNamespacesToWSDLs().values()) { for (EndpointInterface ei : wsdlInfo.getEndpointInterfaces()) { String path = (String) ei.getMetaData().get("soapPath"); WebAppComponent wsComponent = new WebAppComponent(); wsComponent.setName(ei.getServiceName()); wsComponent.setClassname(ei.getEndpointImplementations().iterator().next().getQualifiedName()); wsComponent.setUrlMappings(new TreeSet<String>(Arrays.asList(path))); servlets.add(wsComponent); }/*from www.ja va 2s. com*/ } } if (this.enableJaxrs) { WebAppComponent jaxrsServletComponent = new WebAppComponent(); jaxrsServletComponent.setName("resteasy-jaxrs"); jaxrsServletComponent.setClassname(EnunciateJBossHttpServletDispatcher.class.getName()); TreeSet<String> jaxrsUrlMappings = new TreeSet<String>(); StringBuilder resources = new StringBuilder(); for (RootResource rootResource : getModel().getRootResources()) { if (resources.length() > 0) { resources.append(','); } resources.append(rootResource.getQualifiedName()); for (ResourceMethod resourceMethod : rootResource.getResourceMethods(true)) { String resourceMethodPattern = resourceMethod.getServletPattern(); for (Set<String> subcontextList : ((Map<String, Set<String>>) resourceMethod.getMetaData() .get("subcontexts")).values()) { for (String subcontext : subcontextList) { String servletPattern; if ("".equals(subcontext)) { servletPattern = resourceMethodPattern; } else { servletPattern = subcontext + resourceMethodPattern; } if (jaxrsUrlMappings.add(servletPattern)) { debug("Resource method %s of resource %s to be made accessible by servlet pattern %s.", resourceMethod.getSimpleName(), resourceMethod.getParent().getQualifiedName(), servletPattern); } } } } } if (jaxrsUrlMappings.contains("/*")) { jaxrsUrlMappings.clear(); jaxrsUrlMappings.add("/*"); } else { Iterator<String> iterator = jaxrsUrlMappings.iterator(); while (iterator.hasNext()) { String mapping = iterator.next(); if (!mapping.endsWith("/*") && jaxrsUrlMappings.contains(mapping + "/*")) { iterator.remove(); } } } StringBuilder providers = new StringBuilder(); for (TypeDeclaration provider : getModel().getJAXRSProviders()) { if (providers.length() > 0) { providers.append(','); } providers.append(provider.getQualifiedName()); } if (jacksonAvailable) { if (providers.length() > 0) { providers.append(','); } providers.append("org.codehaus.enunciate.jboss.ResteasyJacksonJaxbProvider"); } if (getEnunciate().isModuleEnabled("amf")) { if (providers.length() > 0) { providers.append(','); } providers.append("org.codehaus.enunciate.modules.amf.JAXRSProvider"); } jaxrsServletComponent.setUrlMappings(jaxrsUrlMappings); jbossContextParameters.put(ResteasyContextParameters.RESTEASY_RESOURCES, resources.toString()); jbossContextParameters.put(ResteasyContextParameters.RESTEASY_PROVIDERS, providers.toString()); String mappingPrefix = this.useSubcontext ? getRestSubcontext() : ""; if (!"".equals(mappingPrefix)) { jbossContextParameters.put("resteasy.servlet.mapping.prefix", mappingPrefix); jaxrsServletComponent.addInitParam("resteasy.servlet.mapping.prefix", mappingPrefix); } if (isUsePathBasedConneg()) { Map<String, String> contentTypesToIds = getModelInternal().getContentTypesToIds(); if (contentTypesToIds != null && contentTypesToIds.size() > 0) { StringBuilder builder = new StringBuilder(); Iterator<Map.Entry<String, String>> contentTypeIt = contentTypesToIds.entrySet().iterator(); while (contentTypeIt.hasNext()) { Map.Entry<String, String> contentTypeEntry = contentTypeIt.next(); builder.append(contentTypeEntry.getValue()).append(" : ").append(contentTypeEntry.getKey()); if (contentTypeIt.hasNext()) { builder.append(", "); } } jbossContextParameters.put(ResteasyContextParameters.RESTEASY_MEDIA_TYPE_MAPPINGS, builder.toString()); } } jbossContextParameters.put(ResteasyContextParameters.RESTEASY_SCAN_RESOURCES, Boolean.FALSE.toString()); servlets.add(jaxrsServletComponent); } webappFragment.setServlets(servlets); if (!this.options.isEmpty()) { webappFragment.setContextParameters(this.options); } getEnunciate().addWebAppFragment(webappFragment); }