List of usage examples for java.util Properties containsKey
@Override public boolean containsKey(Object key)
From source file:edu.kit.dama.mdm.content.mets.MetsMetadataExtractor.java
@Override public final void configure(Properties pProperties) throws PropertyValidationException, ConfigurationException { LOGGER.debug("Configuring mets metadata extractor named {}", getName()); communityDmdSectionId = pProperties.getProperty(COMMUNITY_DMD_SECTION_ID); communityMetadataId = pProperties.getProperty(COMMUNITY_METADATA_SCHEMA_ID); communityMDType = pProperties.getProperty(COMMUNITY_MD_TYPE_ID); if (communityDmdSectionId == null || communityMetadataId == null || communityMDType == null) { throw new ConfigurationException( "Missing mandatory properties detected. Unable to instantiate metadata extractor."); }/*from w w w. j av a 2 s . c o m*/ LOGGER.debug("Performing extractor-specific configuration."); for (String pluginKey : extractorMap.keySet()) { IMetsTypeExtractor plugin = extractorMap.get(pluginKey); LOGGER.debug("Check for plugin '{}'.", plugin.getName()); if (pProperties.containsKey(pluginKey)) { LOGGER.debug("Property for plugin '{}' exists.", plugin.getName()); if (validatePluginString(pluginKey, pProperties.getProperty(pluginKey))) { LOGGER.debug("Add plugin '{}'!", plugin.getName()); additionalExtractors.add(plugin); } } } configureExtractor(pProperties); }
From source file:org.broad.igv.feature.genome.GenomeManager.java
/** * Gets a list of all the locally cached genome archive files that * IGV knows about./* w ww . j a v a2 s . c o m*/ * * @return LinkedHashSet<GenomeListItem> * @throws IOException * @see GenomeListItem */ private List<GenomeListItem> getCachedGenomeArchiveList() throws IOException { if (cachedGenomeArchiveList == null) { cachedGenomeArchiveList = new LinkedList<GenomeListItem>(); if (!DirectoryManager.getGenomeCacheDirectory().exists()) { return cachedGenomeArchiveList; } File[] files = DirectoryManager.getGenomeCacheDirectory().listFiles(); for (File file : files) { if (file.isDirectory()) { continue; } if (!file.getName().toLowerCase().endsWith(Globals.GENOME_FILE_EXTENSION)) { continue; } ZipFile zipFile = null; FileInputStream fis = null; ZipInputStream zipInputStream = null; try { zipFile = new ZipFile(file); fis = new FileInputStream(file); zipInputStream = new ZipInputStream(new BufferedInputStream(fis)); ZipEntry zipEntry = zipFile.getEntry(Globals.GENOME_ARCHIVE_PROPERTY_FILE_NAME); if (zipEntry == null) { continue; // Should never happen } InputStream inputStream = zipFile.getInputStream(zipEntry); Properties properties = new Properties(); properties.load(inputStream); int version = 0; if (properties.containsKey(Globals.GENOME_ARCHIVE_VERSION_KEY)) { try { version = Integer.parseInt(properties.getProperty(Globals.GENOME_ARCHIVE_VERSION_KEY)); } catch (Exception e) { log.error("Error parsing genome version: " + version, e); } } GenomeListItem item = new GenomeListItem( properties.getProperty(Globals.GENOME_ARCHIVE_NAME_KEY), file.getAbsolutePath(), properties.getProperty(Globals.GENOME_ARCHIVE_ID_KEY)); cachedGenomeArchiveList.add(item); } catch (ZipException ex) { log.error("\nZip error unzipping cached genome.", ex); try { file.delete(); zipInputStream.close(); } catch (Exception e) { //ignore exception when trying to delete file } } catch (IOException ex) { log.warn("\nIO error unzipping cached genome.", ex); try { file.delete(); } catch (Exception e) { //ignore exception when trying to delete file } } finally { try { if (zipInputStream != null) { zipInputStream.close(); } if (zipFile != null) { zipFile.close(); } if (fis != null) { fis.close(); } } catch (IOException ex) { log.warn("Error closing genome zip stream!", ex); } } } } return cachedGenomeArchiveList; }
From source file:org.dcm4chee.proxy.forward.ForwardFiles.java
private void addFileToFwdTaskMap(ProxyAEExtension proxyAEE, String calledAET, File file, HashMap<String, ForwardTask> map) throws IOException { Properties prop = InfoFileUtils.getFileInfoProperties(proxyAEE, file); String callingAET = prop.containsKey("use-calling-aet") ? prop.getProperty("use-calling-aet") : prop.getProperty("source-aet"); String cuid = prop.getProperty("sop-class-uid"); String tsuid = prop.getProperty("transfer-syntax-uid"); ForwardTask forwardTask = map.get(callingAET); if (forwardTask == null) { LOG.debug("Creating new forward task for Calling AET {} and Called AET {}", callingAET, calledAET); forwardTask = new ForwardTask(callingAET, calledAET); map.put(callingAET, forwardTask); } else {/*from www . j a va 2 s. c om*/ LOG.debug("Loaded forward task for Calling AET {} and Called AET {}", callingAET, forwardTask.getAAssociateRQ().getCalledAET()); } LOG.debug( "Add file {} to forward task for Calling AET {} and Called AET {} with SOP Class UID = {} and Transfer Syntax UID = {}", new Object[] { file.getPath(), callingAET, forwardTask.getAAssociateRQ().getCalledAET(), cuid, tsuid }); forwardTask.addFile(file, cuid, tsuid); }
From source file:org.alfresco.reporting.action.executer.ReportContainerExecutor.java
private void processReport(final ReportTemplate report, final ReportingContainer reportingContainer, final ReportingRoot reportingRoot) { Properties keyValues = new Properties(); if (logger.isDebugEnabled()) logger.debug("enter processReport, report=" + report.getName()); String targetPath = report.getTargetPath(); Properties targetQueries = reportingRoot.getTargetQueries(); // 1. Determine/get/create target Path // Lets see if there is a relative distribution by Site if (targetPath != null) { targetPath = targetPath.trim();//from w w w.j av a 2 s . c o m if ((targetPath.indexOf("${") == 0) && (targetPath.indexOf("}") > -1)) { // 1a. it is a distribution by Site or other placeholder logger.debug("processReportable: it is a distribution by container"); // get the target container query key String placeHolder = targetPath.substring(2, targetPath.indexOf("}")); String relativePath = targetPath.substring(targetPath.indexOf("}") + 1); relativePath = processDateElementsInPath(relativePath); logger.debug(" placeholder: " + placeHolder); logger.debug(" relative path: " + relativePath); if (placeHolder != null) { if (targetQueries.containsKey(placeHolder)) { // execute Lucene query. For each result find node. // For each node, append relative path // get or create this path // execute ReportExecuter against each of these end nodes (in proper output format) logger.debug("processReport: Processing with placeholder: " + placeHolder); String placeHolderQuery = targetQueries.getProperty(placeHolder); String searchLanguage = reportingHelper .getSearchLanguage(reportingRoot.getRootQueryLanguage()); logger.debug("processReport: query2=" + placeHolderQuery + "(" + searchLanguage + ")"); ResultSet placeHolderResults = searchService.query(StoreRef.STORE_REF_WORKSPACE_SPACESSTORE, searchLanguage, placeHolderQuery); // cycle the resultset of containers for (ResultSetRow placeHolderRow : placeHolderResults) { final NodeRef targetRootRef = placeHolderRow.getChildAssocRef().getChildRef(); logger.debug("Found targetRoot: " + nodeService.getProperty(targetRootRef, ContentModel.PROP_NAME)); // Introduce a storageNodeRef. This is used if you do a query against // persons. The resulting report will be stored in the UserHome space. // The value substitution will however be executed against the Person object. NodeRef storageNodeRef = targetRootRef; logger.debug("processReport: storageNodeRef before=" + storageNodeRef); try { // if a Person object is found, replace it by its HomeFolder. For the best fun! if (nodeService.getType(targetRootRef).equals(ContentModel.TYPE_PERSON)) { logger.debug("processReport: The value=" + nodeService.getProperty(targetRootRef, ContentModel.PROP_HOMEFOLDER)); if (nodeService.getProperty(targetRootRef, ContentModel.PROP_HOMEFOLDER) != null) { logger.debug( "processReport: createGetRepositoryPath: SWAPPING Person for UserHome"); storageNodeRef = (NodeRef) nodeService.getProperty(targetRootRef, ContentModel.PROP_HOMEFOLDER); logger.debug( "processReport: createGetRepositoryPath: storageNodeRef after swap=" + storageNodeRef); } else { logger.debug( "processReport: createGetRepositoryPath: ow boy, no UserHome available for user " + nodeService.getProperty(targetRootRef, ContentModel.PROP_USERNAME)); throw new ReportingException("No UserHome found for user " + nodeService .getProperty(targetRootRef, ContentModel.PROP_USERNAME)); } } else { logger.debug("createGetRepositoryPath: no SWAPPING"); } } catch (ReportingException re) { logger.fatal("processReport: User without a UserHome... Silent ignore"); } logger.debug( "processReport: processReportstorageNodeRef fully after=" + storageNodeRef); // keyValues now contains the keys and the related short-form qnames keyValues = report.getSubstitution(); logger.debug("processReport: initial keyValues = " + keyValues); // process of *replacing* the short-form qnames into actual // node-property values Enumeration keys = keyValues.keys(); while (keys.hasMoreElements()) { final String key = (String) keys.nextElement(); final String value = keyValues.getProperty(key, ""); logger.debug("Initial key=value; " + key + "=" + value); if (value.contains(":") && !"".equals(value)) { // system property final QName property = reportingHelper.replaceShortQNameIntoLong(value); logger.debug("processReport: QName=" + property); logger.debug("processReport: key=" + key + " value=" + nodeService.getProperty(targetRootRef, property)); final String propertyValue = nodeService.getProperty(targetRootRef, property) .toString(); logger.debug("processReport: propertyValue=" + propertyValue); keyValues.setProperty(key, propertyValue); } else { // ordinary property keyValues.setProperty(key, value); logger.debug("processReport: key=" + key + " value=" + value + " targetRootRef=" + targetRootRef); } // end if/else } // end while logger.debug("processReport: final keyValues = " + keyValues); final NodeRef targetRef = createGetRepositoryPath(storageNodeRef, relativePath); logger.debug("processReport: Found full path: " + nodeService.getPath(targetRef)); logger.debug("processReport: keyValues = " + keyValues); createExecuteReport(targetRef, report, keyValues); } // end for ResultSetRow } else { // we cannot deal with this unknown placeholder. // silently let go?! logger.warn("Cannot deal with placeholder: " + placeHolder); } // end if/else targetQueries.containsKey } // end if matcher.find } else { // 1b. it is a single fixed path. Start at companyhome, and find your way in //NodeRef targetRef = createGetRepositoryPath(targetRootRef, relativePath); // execute ReportExecuter against each of these end nodes (in proper output format) } } // end if targetPath !=null if ((report.getTargetNode() != null) && (!"".equals(report.getTargetNode()))) { NodeRef newTarget = null; // create option to concatinate targetPath to targetNode if ((report.getTargetPath() != null) && (!"".equals(report.getTargetPath()))) { final String relativePath = processDateElementsInPath(report.getTargetPath()); newTarget = createGetRepositoryPath(report.getTargetNode(), relativePath); } else { newTarget = report.getTargetNode(); } logger.debug("executing fixed output path"); logger.debug(" report : " + report.getName()); logger.debug(" targetNode: " + newTarget); // keyValues now contains the keys and the related short-form qnames keyValues = report.getSubstitution(); logger.debug("processReport: initial keyValues = " + keyValues); // process of replacing the short-form qnames into actual // node-property values Enumeration keys = keyValues.keys(); while (keys.hasMoreElements()) { String key = (String) keys.nextElement(); String value = keyValues.getProperty(key, ""); // ordinary property keyValues.setProperty(key, value); logger.debug("processReport: key=" + key + " value=" + value); } logger.debug("processReport: final keyValues = " + keyValues); createExecuteReport(newTarget, report, keyValues); } // end if targetPath != null if (logger.isDebugEnabled()) logger.debug("exit processReportable"); }
From source file:org.apache.geode.management.internal.cli.commands.ConnectCommand.java
Result httpConnect(Properties gfProperties, String url, boolean skipSslVerification) { Gfsh gfsh = getGfsh();//from www . j a v a 2 s .c o m try { SSLConfig sslConfig = SSLConfigurationFactory.getSSLConfigForComponent(gfProperties, SecurableCommunicationChannel.WEB); if (sslConfig.isEnabled()) { configureHttpsURLConnection(sslConfig, skipSslVerification); if (url.startsWith("http:")) { url = url.replace("http:", "https:"); } } // authentication check will be triggered inside the constructor HttpOperationInvoker operationInvoker = new HttpOperationInvoker(gfsh, url, gfProperties); gfsh.setOperationInvoker(operationInvoker); LogWrapper.getInstance() .info(CliStrings.format(CliStrings.CONNECT__MSG__SUCCESS, operationInvoker.toString())); return ResultBuilder.createInfoResult( CliStrings.format(CliStrings.CONNECT__MSG__SUCCESS, operationInvoker.toString())); } catch (SecurityException | AuthenticationFailedException e) { // if it's security exception, and we already sent in username and password, still returns the // connection error if (gfProperties.containsKey(ResourceConstants.USER_NAME)) { return handleException(e); } // otherwise, prompt for username and password and retry the connection gfProperties.setProperty(UserInputProperty.USERNAME.getKey(), UserInputProperty.USERNAME.promptForAcceptableValue(gfsh)); gfProperties.setProperty(UserInputProperty.PASSWORD.getKey(), UserInputProperty.PASSWORD.promptForAcceptableValue(gfsh)); return httpConnect(gfProperties, url, skipSslVerification); } catch (Exception e) { // all other exceptions, just logs it and returns a connection error return handleException(e); } finally { Gfsh.redirectInternalJavaLoggers(); } }
From source file:org.dcm4chee.proxy.forward.ForwardFiles.java
private void forwardScheduledNAction(ProxyAEExtension proxyAEE, String calledAET, File[] files) throws IOException { for (File file : files) { Properties prop = InfoFileUtils.getFileInfoProperties(proxyAEE, file); String callingAET = prop.containsKey("use-calling-aet") ? prop.getProperty("use-calling-aet") : prop.getProperty("source-aet"); try {/*from w w w . j a va2s . co m*/ DicomInputStream in = new DicomInputStream(file); Attributes attrs = in.readDataset(-1, -1); if (pendingCStoreFileForwarding(proxyAEE, calledAET, attrs)) continue; AAssociateRQ rq = new AAssociateRQ(); rq.addPresentationContext(new PresentationContext(1, UID.StorageCommitmentPushModelSOPClass, UID.ImplicitVRLittleEndian)); rq.addRoleSelection(new RoleSelection(prop.getProperty("sop-class-uid"), true, true)); rq.setCallingAET(callingAET); rq.setCalledAET(calledAET); Association asInvoked = null; try { asInvoked = proxyAEE.getApplicationEntity().connect(aeCache.findApplicationEntity(calledAET), rq); if (asInvoked.isReadyForDataTransfer()) { forwardScheduledNAction(proxyAEE, asInvoked, file, prop, attrs); } else { renameFile(proxyAEE, RetryObject.ConnectionException.getSuffix(), file, calledAET, prop); } } finally { in.close(); if (asInvoked != null) { try { asInvoked.waitForOutstandingRSP(); asInvoked.release(); } catch (InterruptedException e) { LOG.error(asInvoked + ": unexpected exception: " + e.getMessage()); if (LOG.isDebugEnabled()) e.printStackTrace(); } catch (IOException e) { LOG.error(asInvoked + ": failed to release association: " + e.getMessage()); if (LOG.isDebugEnabled()) e.printStackTrace(); } } } } catch (InterruptedException e) { LOG.error(e.getMessage()); renameFile(proxyAEE, RetryObject.ConnectionException.getSuffix(), file, calledAET, prop); } catch (IncompatibleConnectionException e) { LOG.error(e.getMessage()); renameFile(proxyAEE, RetryObject.IncompatibleConnectionException.getSuffix(), file, calledAET, prop); } catch (ConfigurationException e) { LOG.error(e.getMessage()); renameFile(proxyAEE, RetryObject.ConfigurationException.getSuffix(), file, calledAET, prop); } catch (IOException e) { LOG.error(e.getMessage()); renameFile(proxyAEE, RetryObject.ConnectionException.getSuffix(), file, calledAET, prop); } catch (GeneralSecurityException e) { LOG.error(e.getMessage()); renameFile(proxyAEE, RetryObject.GeneralSecurityException.getSuffix(), file, calledAET, prop); } } }
From source file:com.couchbase.CBConnection.java
public CBConnection(String url, Properties props) throws SQLException { try {// w w w .j a v a2 s. c om String connectionURL; if (props.containsKey(ConnectionParameters.ENABLE_SSL) && props.getProperty(ConnectionParameters.ENABLE_SSL).equals("true")) { logger.trace("Enabling SSL connection"); connectionURL = HTTPS + url.substring(14); } else { logger.trace("Normal http connection"); connectionURL = HTTP + url.substring(14); } List<NameValuePair> parameters = URLEncodedUtils.parse(new URI(connectionURL), "UTF-8"); for (NameValuePair param : parameters) { props.put(param.getName(), param.getValue()); } protocol = new ProtocolImpl(connectionURL, props); protocol.connect(); connected.set(true); } catch (Exception ex) { logger.error("Error opening connection for {} exception {}", url, ex.getMessage()); throw new SQLException("Error opening connection", ex.getCause()); } }
From source file:org.dcm4chee.proxy.forward.ForwardFiles.java
protected void forwardScheduledMPPS(ProxyAEExtension proxyAEE, File[] files, String destinationAETitle, String protocol) throws IOException { for (File file : files) { Properties prop = InfoFileUtils.getFileInfoProperties(proxyAEE, file); String callingAET = prop.containsKey("use-calling-aet") ? prop.getProperty("use-calling-aet") : prop.getProperty("source-aet"); try {/* ww w .ja va2 s . c o m*/ if (protocol == "nset" && pendingNCreateForwarding(proxyAEE, destinationAETitle, file)) { String prevFilePath = file.getPath(); File dst = new File(prevFilePath.substring(0, prevFilePath.length() - 4)); if (file.renameTo(dst)) LOG.debug("{} has pending N-CREATE-RQ, rename to {}", prevFilePath, dst); else { LOG.error("Error renaming {} to {}.", prevFilePath, dst); } continue; } AAssociateRQ rq = new AAssociateRQ(); rq.addPresentationContext(new PresentationContext(1, UID.ModalityPerformedProcedureStepSOPClass, UID.ExplicitVRLittleEndian)); rq.setCallingAET(callingAET); rq.setCalledAET(destinationAETitle); Association as = proxyAEE.getApplicationEntity() .connect(aeCache.findApplicationEntity(destinationAETitle), rq); try { if (as.isReadyForDataTransfer()) { Attributes fmi = readFileMetaInformation(file); forwardScheduledMPPS(proxyAEE, as, file, fmi, protocol, prop); } else { renameFile(proxyAEE, RetryObject.ConnectionException.getSuffix(), file, destinationAETitle, prop); } } finally { if (as != null) { try { as.waitForOutstandingRSP(); as.release(); } catch (InterruptedException e) { LOG.error(as + ": unexpected exception: " + e.getMessage()); if (LOG.isDebugEnabled()) e.printStackTrace(); } catch (IOException e) { LOG.error(as + ": failed to release association: " + e.getMessage()); if (LOG.isDebugEnabled()) e.printStackTrace(); } } } } catch (IOException e) { LOG.error("Error connecting to {}: {} ", destinationAETitle, e.getMessage()); renameFile(proxyAEE, RetryObject.ConnectionException.getSuffix(), file, destinationAETitle, prop); } catch (InterruptedException e) { LOG.error("Connection exception: " + e.getMessage()); renameFile(proxyAEE, RetryObject.ConnectionException.getSuffix(), file, destinationAETitle, prop); } catch (IncompatibleConnectionException e) { LOG.error("Incompatible connection: " + e.getMessage()); renameFile(proxyAEE, RetryObject.IncompatibleConnectionException.getSuffix(), file, destinationAETitle, prop); } catch (ConfigurationException e) { LOG.error("Unable to load configuration: " + e.getMessage()); renameFile(proxyAEE, RetryObject.ConfigurationException.getSuffix(), file, destinationAETitle, prop); } catch (GeneralSecurityException e) { LOG.error("Failed to create SSL context: " + e.getMessage()); renameFile(proxyAEE, RetryObject.GeneralSecurityException.getSuffix(), file, destinationAETitle, prop); } } }
From source file:org.apache.falcon.workflow.engine.OozieWorkflowEngine.java
@Override public void reRun(String cluster, String jobId, Properties props, boolean isForced) throws FalconException { OozieClient client = OozieClientFactory.get(cluster); try {/*from w w w . jav a2 s . c o m*/ WorkflowJob jobInfo = client.getJobInfo(jobId); Properties jobprops = OozieUtils.toProperties(jobInfo.getConf()); if (props != null) { jobprops.putAll(props); } //if user has set any of these oozie rerun properties then force rerun flag is ignored if (!jobprops.containsKey(OozieClient.RERUN_FAIL_NODES) && !jobprops.containsKey(OozieClient.RERUN_SKIP_NODES)) { jobprops.put(OozieClient.RERUN_FAIL_NODES, String.valueOf(!isForced)); } jobprops.remove(OozieClient.COORDINATOR_APP_PATH); jobprops.remove(OozieClient.BUNDLE_APP_PATH); client.reRun(jobId, jobprops); assertStatus(cluster, jobId, Job.Status.RUNNING); LOG.info("Rerun job {} on cluster {}", jobId, cluster); } catch (Exception e) { LOG.error("Unable to rerun workflows", e); throw new FalconException(e); } }
From source file:com.elasticgrid.amazon.boot.Bootstrapper.java
public Bootstrapper() throws IOException, EC2Exception { // retrieve EC2 launch parameters Properties launchParameters = fetchLaunchParameters(); if (launchParameters.getProperty(LAUNCH_PARAMETER_CLUSTER_NAME) == null) { System.err.println("No cluster name given. Assuming 'elastic-grid' as cluster name."); launchParameters.setProperty(LAUNCH_PARAMETER_CLUSTER_NAME, "elastic-grid"); }//from ww w. j a v a 2s. c o m Properties egParameters = translateProperties(launchParameters); // save configuration into an Elastic Grid configuration file File file = saveConfiguration(egParameters); System.out.printf("Elastic Grid configuration file generated in '%s'\n", file.getAbsolutePath()); String securityGroups = FileUtils.readFileToString(new File("/tmp/security-groups")); System.out.printf("Security groups for this EC2 instances are '%s'\n", securityGroups); String profile = "monitor-agent"; boolean hasMonitor = securityGroups.contains(Discovery.MONITOR.getGroupName()); boolean hasAgent = securityGroups.contains(Discovery.AGENT.getGroupName()); if (!hasAgent && !hasMonitor) { System.err .println("Missing node profile information! Make sure this node has required security groups!"); System.exit(-1); } else if (hasAgent && hasMonitor) { profile = "monitor-and-agent"; } else if (hasMonitor) { profile = "monitor"; } else { profile = "agent"; } FileUtils.writeStringToFile(new File("/tmp/eg-node-to-start"), profile); System.out.printf("Local machine is morphed into a %s\n", profile); String overridesURL = ""; if (launchParameters.containsKey(LAUNCH_PARAMETER_OVERRIDES_URL)) overridesURL = launchParameters.getProperty(LAUNCH_PARAMETER_OVERRIDES_URL); FileUtils.writeStringToFile(new File("/tmp/overrides"), overridesURL); }