List of usage examples for java.util LinkedHashMap entrySet
public Set<Map.Entry<K, V>> entrySet()
From source file:TestBufferStreamGenomicsDBImporter.java
/** * Sample driver code for testing Java VariantContext write API for GenomicsDB * The code shows two ways of using the API * (a) Iterator<VariantContext>// ww w . j av a 2 s. co m * (b) Directly adding VariantContext objects * If "-iterators" is passed as the second argument, method (a) is used. */ public static void main(final String[] args) throws IOException, GenomicsDBException, ParseException { if (args.length < 2) { System.err.println("For loading: [-iterators] <loader.json> " + "<stream_name_to_file.json> [bufferCapacity rank lbRowIdx ubRowIdx useMultiChromosomeIterator]"); System.exit(-1); } int argsLoaderFileIdx = 0; if (args[0].equals("-iterators")) argsLoaderFileIdx = 1; //Buffer capacity long bufferCapacity = (args.length >= argsLoaderFileIdx + 3) ? Integer.parseInt(args[argsLoaderFileIdx + 2]) : 1024; //Specify rank (or partition idx) of this process int rank = (args.length >= argsLoaderFileIdx + 4) ? Integer.parseInt(args[argsLoaderFileIdx + 3]) : 0; //Specify smallest row idx from which to start loading. // This is useful for incremental loading into existing array long lbRowIdx = (args.length >= argsLoaderFileIdx + 5) ? Long.parseLong(args[argsLoaderFileIdx + 4]) : 0; //Specify largest row idx up to which loading should be performed - for completeness long ubRowIdx = (args.length >= argsLoaderFileIdx + 6) ? Long.parseLong(args[argsLoaderFileIdx + 5]) : Long.MAX_VALUE - 1; //Boolean to use MultipleChromosomeIterator boolean useMultiChromosomeIterator = (args.length >= argsLoaderFileIdx + 7) ? Boolean.parseBoolean(args[argsLoaderFileIdx + 6]) : false; //<loader.json> first arg String loaderJSONFile = args[argsLoaderFileIdx]; GenomicsDBImporter loader = new GenomicsDBImporter(loaderJSONFile, rank, lbRowIdx, ubRowIdx); //<stream_name_to_file.json> - useful for the driver only //JSON file that contains "stream_name": "vcf_file_path" entries FileReader mappingReader = new FileReader(args[argsLoaderFileIdx + 1]); JSONParser parser = new JSONParser(); LinkedHashMap streamNameToFileName = (LinkedHashMap) parser.parse(mappingReader, new LinkedHashFactory()); ArrayList<VCFFileStreamInfo> streamInfoVec = new ArrayList<VCFFileStreamInfo>(); long rowIdx = 0; for (Object currObj : streamNameToFileName.entrySet()) { Map.Entry<String, String> entry = (Map.Entry<String, String>) currObj; VCFFileStreamInfo currInfo = new VCFFileStreamInfo(entry.getValue(), loaderJSONFile, rank, useMultiChromosomeIterator); /** The following 2 lines are not mandatory - use initializeSampleInfoMapFromHeader() * iff you know for sure that sample names in the VCF header are globally unique * across all streams/files. If not, you have 2 options: * (a) specify your own mapping from sample index in the header to SampleInfo object * (unique_name, rowIdx) OR * (b) specify the mapping in the callset_mapping_file (JSON) and pass null to * addSortedVariantContextIterator() */ LinkedHashMap<Integer, GenomicsDBImporter.SampleInfo> sampleIndexToInfo = new LinkedHashMap<Integer, GenomicsDBImporter.SampleInfo>(); rowIdx = GenomicsDBImporter.initializeSampleInfoMapFromHeader(sampleIndexToInfo, currInfo.mVCFHeader, rowIdx); int streamIdx = -1; if (args[0].equals("-iterators")) streamIdx = loader.addSortedVariantContextIterator(entry.getKey(), currInfo.mVCFHeader, currInfo.mIterator, bufferCapacity, VariantContextWriterBuilder.OutputType.BCF_STREAM, sampleIndexToInfo); //pass sorted VC iterators else //use buffers - VCs will be provided by caller streamIdx = loader.addBufferStream(entry.getKey(), currInfo.mVCFHeader, bufferCapacity, VariantContextWriterBuilder.OutputType.BCF_STREAM, sampleIndexToInfo); currInfo.mStreamIdx = streamIdx; streamInfoVec.add(currInfo); } if (args[0].equals("-iterators")) { //Much simpler interface if using Iterator<VariantContext> loader.importBatch(); assert loader.isDone(); } else { //Must be called after all iterators/streams added - no more iterators/streams // can be added once this function is called loader.setupGenomicsDBImporter(); //Counts and tracks buffer streams for which new data must be supplied //Initialized to all the buffer streams int numExhaustedBufferStreams = streamInfoVec.size(); int[] exhaustedBufferStreamIdxs = new int[numExhaustedBufferStreams]; for (int i = 0; i < numExhaustedBufferStreams; ++i) exhaustedBufferStreamIdxs[i] = i; while (!loader.isDone()) { //Add data for streams that were exhausted in the previous round for (int i = 0; i < numExhaustedBufferStreams; ++i) { VCFFileStreamInfo currInfo = streamInfoVec.get(exhaustedBufferStreamIdxs[i]); boolean added = true; while (added && (currInfo.mIterator.hasNext() || currInfo.mNextVC != null)) { if (currInfo.mNextVC != null) added = loader.add(currInfo.mNextVC, currInfo.mStreamIdx); if (added) if (currInfo.mIterator.hasNext()) currInfo.mNextVC = currInfo.mIterator.next(); else currInfo.mNextVC = null; } } loader.importBatch(); numExhaustedBufferStreams = (int) loader.getNumExhaustedBufferStreams(); for (int i = 0; i < numExhaustedBufferStreams; ++i) exhaustedBufferStreamIdxs[i] = loader.getExhaustedBufferStreamIndex(i); } } }
From source file:org.loklak.geo.GeoNames.java
public static void main(String[] args) { ArrayList<Map.Entry<String, String>> split = split("Hoc est Corpus-meus"); LinkedHashMap<Integer, String> mix = mix(split, 3); for (Map.Entry<Integer, String> entry : mix.entrySet()) { System.out.println("code:" + entry.getKey() + "; string:" + entry.getValue()); }//w ww .j av a 2 s.c om }
From source file:com.act.lcms.db.analysis.StandardIonAnalysis.java
public static void main(String[] args) throws Exception { Options opts = new Options(); for (Option.Builder b : OPTION_BUILDERS) { opts.addOption(b.build());/*from w w w .ja v a2 s . c om*/ } CommandLine cl = null; try { CommandLineParser parser = new DefaultParser(); cl = parser.parse(opts, args); } catch (ParseException e) { System.err.format("Argument parsing failed: %s\n", e.getMessage()); HELP_FORMATTER.printHelp(LoadPlateCompositionIntoDB.class.getCanonicalName(), HELP_MESSAGE, opts, null, true); System.exit(1); } if (cl.hasOption("help")) { HELP_FORMATTER.printHelp(LoadPlateCompositionIntoDB.class.getCanonicalName(), HELP_MESSAGE, opts, null, true); return; } File lcmsDir = new File(cl.getOptionValue(OPTION_DIRECTORY)); if (!lcmsDir.isDirectory()) { System.err.format("File at %s is not a directory\n", lcmsDir.getAbsolutePath()); HELP_FORMATTER.printHelp(LoadPlateCompositionIntoDB.class.getCanonicalName(), HELP_MESSAGE, opts, null, true); System.exit(1); } try (DB db = DB.openDBFromCLI(cl)) { ScanFile.insertOrUpdateScanFilesInDirectory(db, lcmsDir); StandardIonAnalysis analysis = new StandardIonAnalysis(); HashMap<Integer, Plate> plateCache = new HashMap<>(); String plateBarcode = cl.getOptionValue(OPTION_STANDARD_PLATE_BARCODE); String inputChemicals = cl.getOptionValue(OPTION_STANDARD_CHEMICAL); String medium = cl.getOptionValue(OPTION_MEDIUM); // If standard chemical is specified, do standard LCMS ion selection analysis if (inputChemicals != null && !inputChemicals.equals("")) { String[] chemicals; if (!inputChemicals.contains(",")) { chemicals = new String[1]; chemicals[0] = inputChemicals; } else { chemicals = inputChemicals.split(","); } String outAnalysis = cl.getOptionValue(OPTION_OUTPUT_PREFIX) + "." + CSV_FORMAT; String plottingDirectory = cl.getOptionValue(OPTION_PLOTTING_DIR); String[] headerStrings = { "Molecule", "Plate Bar Code", "LCMS Detection Results" }; CSVPrinter printer = new CSVPrinter(new FileWriter(outAnalysis), CSVFormat.DEFAULT.withHeader(headerStrings)); for (String inputChemical : chemicals) { List<StandardWell> standardWells; Plate queryPlate = Plate.getPlateByBarcode(db, cl.getOptionValue(OPTION_STANDARD_PLATE_BARCODE)); if (plateBarcode != null && medium != null) { standardWells = analysis.getStandardWellsForChemicalInSpecificPlateAndMedium(db, inputChemical, queryPlate.getId(), medium); } else if (plateBarcode != null) { standardWells = analysis.getStandardWellsForChemicalInSpecificPlate(db, inputChemical, queryPlate.getId()); } else { standardWells = analysis.getStandardWellsForChemical(db, inputChemical); } if (standardWells.size() == 0) { throw new RuntimeException("Found no LCMS wells for " + inputChemical); } // Sort in descending order of media where MeOH and Water related media are promoted to the top and // anything derived from yeast media are demoted. Collections.sort(standardWells, new Comparator<StandardWell>() { @Override public int compare(StandardWell o1, StandardWell o2) { if (StandardWell.doesMediaContainYeastExtract(o1.getMedia()) && !StandardWell.doesMediaContainYeastExtract(o2.getMedia())) { return 1; } else { return 0; } } }); Map<StandardWell, StandardIonResult> wellToIonRanking = StandardIonAnalysis .getBestMetlinIonsForChemical(inputChemical, lcmsDir, db, standardWells, plottingDirectory); if (wellToIonRanking.size() != standardWells.size() && !cl.hasOption(OPTION_OVERRIDE_NO_SCAN_FILE_FOUND)) { throw new Exception("Could not find a scan file associated with one of the standard wells"); } for (StandardWell well : wellToIonRanking.keySet()) { LinkedHashMap<String, XZ> snrResults = wellToIonRanking.get(well).getAnalysisResults(); String snrRankingResults = ""; int numResultsToShow = 0; Plate plateForWellToAnalyze = Plate.getPlateById(db, well.getPlateId()); for (Map.Entry<String, XZ> ionToSnrAndTime : snrResults.entrySet()) { if (numResultsToShow > 3) { break; } String ion = ionToSnrAndTime.getKey(); XZ snrAndTime = ionToSnrAndTime.getValue(); snrRankingResults += String.format(ion + " (%.2f SNR at %.2fs); ", snrAndTime.getIntensity(), snrAndTime.getTime()); numResultsToShow++; } String[] resultSet = { inputChemical, plateForWellToAnalyze.getBarcode() + " " + well.getCoordinatesString() + " " + well.getMedia() + " " + well.getConcentration(), snrRankingResults }; printer.printRecord(resultSet); } } try { printer.flush(); printer.close(); } catch (IOException e) { System.err.println("Error while flushing/closing csv writer."); e.printStackTrace(); } } else { // Get the set of chemicals that includes the construct and all it's intermediates Pair<ConstructEntry, List<ChemicalAssociatedWithPathway>> constructAndPathwayChems = analysis .getChemicalsForConstruct(db, cl.getOptionValue(OPTION_CONSTRUCT)); System.out.format("Construct: %s\n", constructAndPathwayChems.getLeft().getCompositionId()); for (ChemicalAssociatedWithPathway pathwayChem : constructAndPathwayChems.getRight()) { System.out.format(" Pathway chem %s\n", pathwayChem.getChemical()); // Get all the standard wells for the pathway chemicals. These wells contain only the // the chemical added with controlled solutions (ie no organism or other chemicals in the // solution) List<StandardWell> standardWells; if (plateBarcode != null) { Plate queryPlate = Plate.getPlateByBarcode(db, cl.getOptionValue(OPTION_STANDARD_PLATE_BARCODE)); standardWells = analysis.getStandardWellsForChemicalInSpecificPlate(db, pathwayChem.getChemical(), queryPlate.getId()); } else { standardWells = analysis.getStandardWellsForChemical(db, pathwayChem.getChemical()); } for (StandardWell wellToAnalyze : standardWells) { List<StandardWell> negativeControls = analysis.getViableNegativeControlsForStandardWell(db, wellToAnalyze); Map<StandardWell, List<ScanFile>> allViableScanFiles = analysis .getViableScanFilesForStandardWells(db, wellToAnalyze, negativeControls); List<String> primaryStandardScanFileNames = new ArrayList<>(); for (ScanFile scanFile : allViableScanFiles.get(wellToAnalyze)) { primaryStandardScanFileNames.add(scanFile.getFilename()); } Plate plate = plateCache.get(wellToAnalyze.getPlateId()); if (plate == null) { plate = Plate.getPlateById(db, wellToAnalyze.getPlateId()); plateCache.put(plate.getId(), plate); } System.out.format(" Standard well: %s @ %s, '%s'%s%s\n", plate.getBarcode(), wellToAnalyze.getCoordinatesString(), wellToAnalyze.getChemical(), wellToAnalyze.getMedia() == null ? "" : String.format(" in %s", wellToAnalyze.getMedia()), wellToAnalyze.getConcentration() == null ? "" : String.format(" @ %s", wellToAnalyze.getConcentration())); System.out.format(" Scan files: %s\n", StringUtils.join(primaryStandardScanFileNames, ", ")); for (StandardWell negCtrlWell : negativeControls) { plate = plateCache.get(negCtrlWell.getPlateId()); if (plate == null) { plate = Plate.getPlateById(db, negCtrlWell.getPlateId()); plateCache.put(plate.getId(), plate); } List<String> negativeControlScanFileNames = new ArrayList<>(); for (ScanFile scanFile : allViableScanFiles.get(negCtrlWell)) { negativeControlScanFileNames.add(scanFile.getFilename()); } System.out.format(" Viable negative: %s @ %s, '%s'%s%s\n", plate.getBarcode(), negCtrlWell.getCoordinatesString(), negCtrlWell.getChemical(), negCtrlWell.getMedia() == null ? "" : String.format(" in %s", negCtrlWell.getMedia()), negCtrlWell.getConcentration() == null ? "" : String.format(" @ %s", negCtrlWell.getConcentration())); System.out.format(" Scan files: %s\n", StringUtils.join(negativeControlScanFileNames, ", ")); // TODO: do something useful with the standard wells and their scan files, and then stop all the printing. } } } } } }
From source file:Main.java
public static <K, V> void putAt(LinkedHashMap<K, V> map, K key, V value, int pos) { Iterator<Entry<K, V>> ei = map.entrySet().iterator(); LinkedHashMap<K, V> pre = new LinkedHashMap<>(); LinkedHashMap<K, V> post = new LinkedHashMap<>(); for (int i = 0; i < pos; i++) { if (!ei.hasNext()) break; Entry<K, V> tmpE = ei.next(); pre.put(tmpE.getKey(), tmpE.getValue()); }//w ww . jav a 2s . com // skip element at pos if (ei.hasNext()) ei.next(); while (ei.hasNext()) { Entry<K, V> tmpE = ei.next(); post.put(tmpE.getKey(), tmpE.getValue()); } map.clear(); map.putAll(pre); map.put(key, value); map.putAll(post); }
From source file:Main.java
public static <K, V> void sortMap(LinkedHashMap<K, V> map, Comparator<Map.Entry<K, V>> c) { List<Map.Entry<K, V>> entries = new ArrayList<>(map.entrySet()); entries.sort(c);//from w w w . jav a2s . c o m map.clear(); for (Map.Entry<K, V> e : entries) { map.put(e.getKey(), e.getValue()); } }
From source file:org.deegree.tools.feature.gml.MappingShortener.java
private static String applyRules(String s, LinkedHashMap<String, String> rules) { String shortened = s;/* w w w .j a va 2s .c om*/ for (Entry<?, ?> rule : rules.entrySet()) { String from = (String) rule.getKey(); String to = (String) rule.getValue(); shortened = shortened.replaceAll(from, to); } return shortened; }
From source file:Main.java
public static String mapToXml(String s, LinkedHashMap linkedhashmap) { StringBuilder stringbuilder = new StringBuilder(); stringbuilder.append("<key>"); Object obj;/*from w w w .java 2s . c o m*/ for (Iterator iterator = linkedhashmap.entrySet().iterator(); iterator.hasNext(); stringbuilder .append((new StringBuilder("</")).append(obj).append(">").toString())) { java.util.Map.Entry entry = (java.util.Map.Entry) iterator.next(); obj = entry.getKey(); Object obj1 = entry.getValue(); if (obj == null) obj = "unknow"; if (obj1 == null) obj1 = "unknow"; stringbuilder.append((new StringBuilder("<")).append(obj).append(">").toString()); stringbuilder.append(obj1); } stringbuilder.append("</key>"); return stringbuilder.toString(); }
From source file:se.altrusoft.docserv.models.DynamicModel.java
@SuppressWarnings("unchecked") private static void traverseStructure(Object node, Map<String, Class<?>> attributes) { if (node instanceof Map) { LinkedHashMap<String, Object> map = (LinkedHashMap<String, Object>) node; Set<Entry<String, Object>> entrySet = map.entrySet(); Iterator<Entry<String, Object>> iterator = entrySet.iterator(); while (iterator.hasNext()) { Entry<String, Object> entry = iterator.next(); traverseStructure(entry, attributes); }/*from www . jav a 2s .com*/ } else if (node instanceof Entry) { Entry<String, Object> entry = (Entry<String, Object>) node; Object value = entry.getValue(); if (value instanceof Map) { traverseStructure(value, attributes); } else { Class<?> attributeClass = value.getClass(); String attributeName = entry.getKey(); attributes.put(attributeName, attributeClass); } } }
From source file:AndroidUninstallStock.java
@SuppressWarnings("static-access") public static void main(String[] args) { try {// w w w . ja va2s.c o m String lang = Locale.getDefault().getLanguage(); GnuParser cmdparser = new GnuParser(); Options cmdopts = new Options(); for (String fld : Arrays.asList("shortOpts", "longOpts", "optionGroups")) { // hack for printOptions java.lang.reflect.Field fieldopt = cmdopts.getClass().getDeclaredField(fld); fieldopt.setAccessible(true); fieldopt.set(cmdopts, new LinkedHashMap<>()); } cmdopts.addOption("h", "help", false, "Help"); cmdopts.addOption("t", "test", false, "Show only report"); cmdopts.addOption(OptionBuilder.withLongOpt("adb").withArgName("file").hasArg() .withDescription("Path to ADB from Android SDK").create("a")); cmdopts.addOption(OptionBuilder.withLongOpt("dev").withArgName("device").hasArg() .withDescription("Select device (\"adb devices\")").create("d")); cmdopts.addOption(null, "restore", false, "If packages have not yet removed and are disabled, " + "you can activate them again"); cmdopts.addOption(null, "google", false, "Delete packages are in the Google section"); cmdopts.addOption(null, "unapk", false, "Delete /system/app/ *.apk *.odex *.dex" + System.lineSeparator() + "(It is required to repeat command execution)"); cmdopts.addOption(null, "unlib", false, "Delete /system/lib/[libs in apk]"); //cmdopts.addOption(null, "unfrw", false, "Delete /system/framework/ (special list)"); cmdopts.addOption(null, "scanlibs", false, "(Dangerous!) Include all the libraries of selected packages." + " Use with --unlib"); cmdopts.addOptionGroup(new OptionGroup() { { addOption(OptionBuilder.withLongOpt("genfile").withArgName("file").hasArg().isRequired() .withDescription("Create file with list packages").create()); addOption(OptionBuilder.withLongOpt("lang").withArgName("ISO 639").hasArg().create()); } }); cmdopts.getOption("lang").setDescription( "See hl= in Google URL (default: " + lang + ") " + "for description from Google Play Market"); CommandLine cmd = cmdparser.parse(cmdopts, args); if (args.length == 0 || cmd.hasOption("help")) { PrintWriter console = new PrintWriter(System.out); HelpFormatter cmdhelp = new HelpFormatter(); cmdhelp.setOptionComparator(new Comparator<Option>() { @Override public int compare(Option o1, Option o2) { return 0; } }); console.println("WARNING: Before use make a backup with ClockworkMod Recovery!"); console.println(); console.println("AndroidUninstallStock [options] [AndroidListSoft.xml]"); cmdhelp.printOptions(console, 80, cmdopts, 3, 2); console.flush(); return; } String adb = cmd.getOptionValue("adb", "adb"); try { run(adb, "start-server"); } catch (IOException e) { System.out.println("Error: Not found ADB! Use -a or --adb"); return; } final boolean NotTest = !cmd.hasOption("test"); String deverror = getDeviceStatus(adb, cmd.getOptionValue("dev")); if (!deverror.isEmpty()) { System.out.println(deverror); return; } System.out.println("Getting list packages:"); LinkedHashMap<String, String> apklist = new LinkedHashMap<String, String>(); for (String ln : run(adb, "-s", lastdevice, "shell", "pm list packages -s -f")) { // "pm list packages" give list sorted by packages ;) String pckg = ln.substring("package:".length()); String pckgname = ln.substring(ln.lastIndexOf('=') + 1); pckg = pckg.substring(0, pckg.length() - pckgname.length() - 1); if (!pckgname.equals("android") && !pckgname.equals("com.android.vending")/*Google Play Market*/) { apklist.put(pckg, pckgname); } } for (String ln : run(adb, "-s", lastdevice, "shell", "ls /system/app/")) { String path = "/system/app/" + ln.replace(".odex", ".apk").replace(".dex", ".apk"); if (!apklist.containsKey(path)) { apklist.put(path, ""); } } apklist.remove("/system/app/mcRegistry"); for (Map.Entry<String, String> info : sortByValues(apklist).entrySet()) { System.out.println(info.getValue() + " = " + info.getKey()); } String genfile = cmd.getOptionValue("genfile"); if (genfile != null) { Path genpath = Paths.get(genfile); try (BufferedWriter gen = Files.newBufferedWriter(genpath, StandardCharsets.UTF_8, new StandardOpenOption[] { StandardOpenOption.CREATE, StandardOpenOption.TRUNCATE_EXISTING, StandardOpenOption.WRITE })) { if (cmd.getOptionValue("lang") != null) { lang = cmd.getOptionValue("lang"); } LinkedHashSet<String> listsystem = new LinkedHashSet<String>() { { add("com.android"); add("com.google.android"); //add("com.sec.android.app"); add("com.monotype.android"); add("eu.chainfire.supersu"); } }; // \r\n for Windows Notepad gen.write("<?xml version=\"1.0\" encoding=\"UTF-8\"?>\r\n"); gen.write("<!-- & raplace with & or use <![CDATA[ ]]> -->\r\n"); gen.write("<AndroidUninstallStock>\r\n\r\n"); gen.write("<Normal>\r\n"); System.out.println(); System.out.println("\tNormal:"); writeInfo(gen, apklist, lang, listsystem, true); gen.write("\t<apk name=\"Exclude Google and etc\">\r\n"); for (String exc : listsystem) { gen.write("\t\t<exclude global=\"true\" in=\"package\" pattern=\"" + exc + "\" />\r\n"); } gen.write("\t</apk>\r\n"); gen.write("</Normal>\r\n\r\n"); gen.write("<Google>\r\n"); System.out.println(); System.out.println("\tGoogle:"); writeInfo(gen, apklist, lang, listsystem, false); gen.write("</Google>\r\n\r\n"); gen.write("</AndroidUninstallStock>\r\n"); System.out.println("File " + genpath.toAbsolutePath() + " created."); } return; } String[] FileName = cmd.getArgs(); if (!(FileName.length > 0 && Files.isReadable(Paths.get(FileName[0])))) { System.out.println("Error: File " + FileName[0] + " not found!"); return; } DocumentBuilderFactory xmlfactory = getXmlDocFactory(); // DocumentBuilder.setErrorHandler() for print errors Document xml = xmlfactory.newDocumentBuilder().parse(new File(FileName[0])); LinkedList<AusInfo> Normal = new LinkedList<AusInfo>(); LinkedList<AusInfo> Google = new LinkedList<AusInfo>(); NodeList ndaus = xml.getElementsByTagName("AndroidUninstallStock").item(0).getChildNodes(); for (int ndausx = 0, ndausc = ndaus.getLength(); ndausx < ndausc; ndausx++) { Node ndnow = ndaus.item(ndausx); NodeList nd = ndnow.getChildNodes(); String ndname = ndnow.getNodeName(); for (int ndx = 0, ndc = nd.getLength(); ndx < ndc; ndx++) { if (!nd.item(ndx).getNodeName().equalsIgnoreCase("apk")) { continue; } if (ndname.equalsIgnoreCase("Normal")) { Normal.add(getApkInfo(nd.item(ndx))); } else if (ndname.equalsIgnoreCase("Google")) { Google.add(getApkInfo(nd.item(ndx))); } } } // FIXME This part must be repeated until the "pm uninstall" will not issue "Failure" on all packages. // Now requires a restart. System.out.println(); System.out.println("Include and Exclude packages (Normal):"); LinkedHashMap<String, String> apkNormal = getApkFromPattern(apklist, Normal, false); System.out.println(); System.out.println("Global Exclude packages (Normal):"); apkNormal = getApkFromPattern(apkNormal, Normal, true); System.out.println(); System.out.println("Final list packages (Normal):"); for (Map.Entry<String, String> info : sortByValues(apkNormal).entrySet()) { System.out.println(info.getValue() + " = " + info.getKey()); } LinkedHashMap<String, String> apkGoogle = new LinkedHashMap<String, String>(); if (cmd.hasOption("google")) { System.out.println(); System.out.println("Include and Exclude packages (Google):"); apkGoogle = getApkFromPattern(apklist, Google, false); System.out.println(); System.out.println("Global Exclude packages (Google):"); apkGoogle = getApkFromPattern(apkGoogle, Google, true); System.out.println(); System.out.println("Final list packages (Google):"); for (Map.Entry<String, String> info : sortByValues(apkGoogle).entrySet()) { System.out.println(info.getValue() + " = " + info.getKey()); } } if (NotTest) { if (!hasRoot(adb)) { System.out.println("No Root"); System.out.println(); System.out.println("FINISH :)"); return; } } if (cmd.hasOption("restore")) { System.out.println(); System.out.println("Enable (Restore) packages (Normal):"); damage(adb, "pm enable ", NotTest, apkNormal, 2); if (cmd.hasOption("google")) { System.out.println(); System.out.println("Enable (Restore) packages (Google):"); damage(adb, "pm enable ", NotTest, apkGoogle, 2); } System.out.println(); System.out.println("FINISH :)"); return; } else { System.out.println(); System.out.println("Disable packages (Normal):"); damage(adb, "pm disable ", NotTest, apkNormal, 2); if (cmd.hasOption("google")) { System.out.println(); System.out.println("Disable packages (Google):"); damage(adb, "pm disable ", NotTest, apkGoogle, 2); } } if (!cmd.hasOption("unapk") && !cmd.hasOption("unlib")) { System.out.println(); System.out.println("FINISH :)"); return; } // Reboot now not needed /*if (NotTest) { reboot(adb, "-s", lastdevice, "reboot"); if (!hasRoot(adb)) { System.out.println("No Root"); System.out.println(); System.out.println("FINISH :)"); return; } }*/ if (cmd.hasOption("unlib")) { // "find" not found System.out.println(); System.out.println("Getting list libraries:"); LinkedList<String> liblist = new LinkedList<String>(); liblist.addAll(run(adb, "-s", lastdevice, "shell", "ls -l /system/lib/")); String dircur = "/system/lib/"; for (int x = 0; x < liblist.size(); x++) { if (liblist.get(x).startsWith("scan:")) { dircur = liblist.get(x).substring("scan:".length()); liblist.remove(x); x--; } else if (liblist.get(x).startsWith("d")) { String dir = liblist.get(x).substring(liblist.get(x).lastIndexOf(':') + 4) + "/"; liblist.remove(x); x--; liblist.add("scan:/system/lib/" + dir); liblist.addAll(run(adb, "-s", lastdevice, "shell", "ls -l /system/lib/" + dir)); continue; } liblist.set(x, dircur + liblist.get(x).substring(liblist.get(x).lastIndexOf(':') + 4)); System.out.println(liblist.get(x)); } final boolean scanlibs = cmd.hasOption("scanlibs"); LinkedHashMap<String, String> libNormal = getLibFromPatternInclude(adb, liblist, apkNormal, Normal, "Normal", scanlibs); libNormal = getLibFromPatternGlobalExclude(libNormal, Normal, "Normal"); System.out.println(); System.out.println("Final list libraries (Normal):"); for (Map.Entry<String, String> info : sortByValues(libNormal).entrySet()) { System.out.println(info.getKey() + " = " + info.getValue()); } LinkedHashMap<String, String> libGoogle = new LinkedHashMap<String, String>(); if (cmd.hasOption("google")) { libGoogle = getLibFromPatternInclude(adb, liblist, apkGoogle, Google, "Google", scanlibs); libGoogle = getLibFromPatternGlobalExclude(libGoogle, Google, "Google"); System.out.println(); System.out.println("Final list libraries (Google):"); for (Map.Entry<String, String> info : sortByValues(libGoogle).entrySet()) { System.out.println(info.getKey() + " = " + info.getValue()); } } LinkedHashMap<String, String> apkExclude = new LinkedHashMap<String, String>(apklist); for (String key : apkNormal.keySet()) { apkExclude.remove(key); } for (String key : apkGoogle.keySet()) { apkExclude.remove(key); } System.out.println(); System.out.println("Include libraries from Exclude packages:"); LinkedHashMap<String, String> libExclude = getLibFromPackage(adb, liblist, apkExclude); System.out.println(); System.out.println("Enclude libraries from Exclude packages (Normal):"); for (Map.Entry<String, String> info : sortByValues(libNormal).entrySet()) { if (libExclude.containsKey(info.getKey())) { System.out.println("exclude: " + info.getKey() + " = " + libExclude.get(info.getKey())); libNormal.remove(info.getKey()); } } System.out.println(); System.out.println("Enclude libraries from Exclude packages (Google):"); for (Map.Entry<String, String> info : sortByValues(libGoogle).entrySet()) { if (libExclude.containsKey(info.getKey())) { System.out.println("exclude: " + info.getKey() + " = " + libExclude.get(info.getKey())); libGoogle.remove(info.getKey()); } } System.out.println(); System.out.println("Delete libraries (Normal):"); damage(adb, "rm ", NotTest, libNormal, 1); if (cmd.hasOption("google")) { System.out.println(); System.out.println("Delete libraries (Google):"); damage(adb, "rm ", NotTest, libGoogle, 1); } } if (cmd.hasOption("unapk")) { System.out.println(); System.out.println("Cleaning data packages (Normal):"); damage(adb, "pm clear ", NotTest, apkNormal, 2); if (cmd.hasOption("google")) { System.out.println(); System.out.println("Cleaning data packages (Google):"); damage(adb, "pm clear ", NotTest, apkGoogle, 2); } System.out.println(); System.out.println("Uninstall packages (Normal):"); damage(adb, "pm uninstall ", NotTest, apkNormal, 2); if (cmd.hasOption("google")) { System.out.println(); System.out.println("Uninstall packages (Google):"); damage(adb, "pm uninstall ", NotTest, apkGoogle, 2); } } if (cmd.hasOption("unapk")) { System.out.println(); System.out.println("Delete packages (Normal):"); LinkedHashMap<String, String> dexNormal = new LinkedHashMap<String, String>(); for (Map.Entry<String, String> apk : apkNormal.entrySet()) { dexNormal.put(apk.getKey(), apk.getValue()); dexNormal.put(apk.getKey().replace(".apk", ".dex"), apk.getValue()); dexNormal.put(apk.getKey().replace(".apk", ".odex"), apk.getValue()); } damage(adb, "rm ", NotTest, dexNormal, 1); if (cmd.hasOption("google")) { System.out.println(); System.out.println("Delete packages (Google):"); LinkedHashMap<String, String> dexGoogle = new LinkedHashMap<String, String>(); for (Map.Entry<String, String> apk : apkGoogle.entrySet()) { dexGoogle.put(apk.getKey(), apk.getValue()); dexGoogle.put(apk.getKey().replace(".apk", ".dex"), apk.getValue()); dexGoogle.put(apk.getKey().replace(".apk", ".odex"), apk.getValue()); } damage(adb, "rm ", NotTest, dexGoogle, 1); } } if (NotTest) { run(adb, "-s", lastdevice, "reboot"); } System.out.println(); System.out.println("FINISH :)"); } catch (SAXException e) { System.out.println("Error parsing list: " + e); } catch (Throwable e) { e.printStackTrace(); } }
From source file:Main.java
public static <G> List<G> combineWithOrder(LinkedHashMap<String, Integer> keyIdMap, Map<String, G> keyValueCacheMap, Map<Integer, G> idValueArticles) { List<G> ret = new ArrayList<G>(); for (Entry<String, Integer> keyIdMapEntry : keyIdMap.entrySet()) { String key = keyIdMapEntry.getKey(); Integer id = keyIdMapEntry.getValue(); G g = keyValueCacheMap.get(key); if (g == null) { g = idValueArticles.get(id); }/* w w w . j a v a2 s . co m*/ if (g != null) { ret.add(g); } } return ret; }