List of usage examples for java.util Hashtable get
@SuppressWarnings("unchecked") public synchronized V get(Object key)
From source file:naming.resources.ProxyDirContext.java
/** * Builds a proxy directory context using the given environment. *///ww w.j av a2s. c om public ProxyDirContext(Hashtable env, DirContext dirContext) { this.env = env; this.dirContext = dirContext; if (dirContext instanceof BaseDirContext) { // Initialize parameters based on the associated dir context, like // the caching policy. if (((BaseDirContext) dirContext).isCached()) { cache = Collections.synchronizedMap(new LRUMap(cacheSize)); cacheTTL = ((BaseDirContext) dirContext).getCacheTTL(); cacheObjectMaxSize = ((BaseDirContext) dirContext).getCacheObjectMaxSize(); } } hostName = (String) env.get(HOST); contextName = (String) env.get(CONTEXT); }
From source file:edu.eurac.commul.pepperModules.mmax2.Salt2MMAX2Mapper.java
private SaltExtendedMarkable getSContainerMarkable(Object sElem, String schemeName, String span, String sName, String sId, String containedId, String containedScheme) { if (!this.sContainerMarkables.containsKey(sElem)) { this.sContainerMarkables.put(sElem, new Hashtable<Scheme, SaltExtendedMarkableContainer>()); }/*from w ww . j av a2s . c o m*/ Hashtable<Scheme, SaltExtendedMarkableContainer> associatedMarkables = this.sContainerMarkables.get(sElem); SaltExtendedMarkableContainer containerMarkable = null; Scheme associatedScheme = getScheme(schemeName); if (!associatedMarkables.containsKey(associatedScheme)) { SaltExtendedMarkableFactory markableFactory = this.document.getFactory() .getMarkableFactory(associatedScheme); if (markableFactory == null) { markableFactory = new SaltExtendedMarkableFactory(associatedScheme, this.documentBuilder); this.document.getFactory().addMarkableFactory(markableFactory); } containerMarkable = markableFactory.newMarkableContainer(getNewId(), span, new ArrayList<MarkableAttribute>(), SaltExtendedMmax2Infos.SALT_INFO_TYPE_SCONTAINER, sName, sId, containedId, containedScheme); associatedMarkables.put(associatedScheme, containerMarkable); document.addMarkable(containerMarkable); } else { containerMarkable = associatedMarkables.get(associatedScheme); } return containerMarkable; }
From source file:hu.sztaki.lpds.pgportal.portlets.workflow.EasyWorkflowPortlet.java
/** * Detailed displaying of a worflow instance data *//* ww w . ja v a2s . c o m*/ public void doInstanceDetails(ActionRequest request, ActionResponse response) throws PortletException { String workflow = "" + request.getParameter("workflow"); doDetails(request, response); request.getPortletSession().setAttribute("cworkflow", request.getParameter("workflow")); request.getPortletSession().setAttribute("detailsruntime", request.getParameter("rtid")); // System.out.println("!!!!doInstanceDetails rtid:"+request.getParameter("rtid")+" workflow:"+workflow); request.setAttribute("rtid", PortalCacheService.getInstance().getUser(request.getRemoteUser()) .getWorkflow(workflow).getRuntime(request.getParameter("rtid")).getText()); request.setAttribute("workflow", PortalCacheService.getInstance().getUser(request.getRemoteUser()).getWorkflow(workflow)); if (PortalCacheService.getInstance().getUser(request.getRemoteUser()) .getWorkflow(request.getParameter("workflow")).getRuntime(request.getParameter("rtid")) .getJobsStatus().equals(new Hashtable())) { Hashtable prp = new Hashtable(); Vector v = new Vector(); prp.put("url", PortalCacheService.getInstance().getUser(request.getRemoteUser()) .getWorkflow(request.getParameter("workflow")).getWfsID()); ServiceType st = InformationBase.getI().getService("wfs", "portal", prp, new Vector()); try { PortalWfsClient pc = (PortalWfsClient) Class.forName(st.getClientObject()).newInstance(); pc.setServiceURL(st.getServiceUrl()); pc.setServiceID(st.getServiceID()); ComDataBean cmb = new ComDataBean(); cmb.setPortalID(PropertyLoader.getInstance().getProperty("service.url")); cmb.setUserID(request.getRemoteUser()); cmb.setWorkflowID(request.getParameter("workflow")); cmb.setWorkflowRuntimeID(request.getParameter("rtid")); v = pc.getWorkflowInstanceJobs(cmb); JobStatusBean tmp; for (int i = 0; i < v.size(); i++) { tmp = (JobStatusBean) v.get(i); PortalCacheService.getInstance().getUser(request.getRemoteUser()) .getWorkflow(request.getParameter("workflow")).getRuntime(request.getParameter("rtid")) .addJobbStatus(tmp.getJobID(), "" + tmp.getPID(), "" + tmp.getStatus(), tmp.getResource(), 0); } } catch (Exception e) { e.printStackTrace(); } } Hashtable jobs = PortalCacheService.getInstance().getUser(request.getRemoteUser()) .getWorkflow(request.getParameter("workflow")).getRuntime(request.getParameter("rtid")) .getCollectionJobsStatus(); //System.out.println("---doInstanceDetails:"+jobs); int sinit = 0; int sproc = 0; int sfinalok = 0; int sfinalerr = 0; Enumeration jobskeys = jobs.keys(); while (jobskeys.hasMoreElements()) {//iterate jobs Hashtable job = (Hashtable) jobs.get(jobskeys.nextElement()); Enumeration jkeys = job.keys(); while (jkeys.hasMoreElements()) {//paramjobs try { String jobstatus = "" + jkeys.nextElement();//job statuses from the given gob int ijobStatus = Integer.parseInt(jobstatus); //System.out.println("jobstatus:"+jobstatus+" job.get(jobstatus):"+job.get(ijobStatus)); int jobstatusnbr = Integer.parseInt("" + job.get(ijobStatus));//?db if (jobstatus.equals("1") || jobstatus.equals("28")) {//init or suspended sinit += jobstatusnbr; } else if (jobstatus.equals("6") || jobstatus.equals("21") || jobstatus.equals("25")) { sfinalok += jobstatusnbr; } else if (jobstatus.equals("7")) { sfinalerr += jobstatusnbr; } else { sproc += jobstatusnbr; } } catch (Exception e) { e.printStackTrace(); } } } int sum = sinit + sproc + sfinalok + sfinalerr; double psinit = ((double) sinit / sum) * 100; java.text.DecimalFormat fmt = new java.text.DecimalFormat("#"); request.setAttribute("sinit", sinit); request.setAttribute("sproc", sproc); request.setAttribute("sfinalok", sfinalok); request.setAttribute("sfinalerr", sfinalerr); request.setAttribute("psinit", fmt.format(((double) sinit / sum) * 100)); request.setAttribute("psproc", fmt.format(((double) sproc / sum) * 100)); request.setAttribute("psfinalok", fmt.format(((double) sfinalok / sum) * 100)); request.setAttribute("psfinalerr", fmt.format(((double) sfinalerr / sum) * 100)); request.setAttribute("ssum", sum); // System.out.println("---doInstanceDetails:" + sinit + "+" + sproc + "+" + sfinalok+ "+" + sfinalerr+"="+sum+" --- init%:"+psinit+""); request.setAttribute("instJobList", PortalCacheService.getInstance().getUser(request.getRemoteUser()) .getWorkflow(request.getParameter("workflow")).getRuntime(request.getParameter("rtid")) .getCollectionJobsStatus()); }
From source file:com.netscape.admin.certsrv.Console.java
/** * initialize the ldap connection according to all the information. If the directory server is * not running, try to start the directory server. */*from www. j a v a 2 s . com*/ * @param info ConsoleInfo which store the global information. * @return true if successfull. false otherwise. */ private final int LDAPinitialization(ConsoleInfo info) { // Set DS information; Hashtable<String, String> ht = _info.getAuthenticationValues(); String param; // set up configuration data base information if ((param = (ht.get("SIE"))) != null) _adminServerSIE = param; else Debug.println("Console:authenticate_user():SIE not found"); if ((param = (ht.get("ldapHost"))) != null) info.setHost(param); else Debug.println("Console:authenticate_user():ldapHost not found"); if ((param = (ht.get("ldapPort"))) != null) info.setPort(Integer.parseInt(param)); else Debug.println("Console:authenticate_user():ldapPort not found"); if ((param = (ht.get("ldapBaseDN"))) != null) info.setBaseDN(param); else Debug.println("Console:authenticate_user():ldapBaseDN not found"); param = (ht.get("ldapSecurity")); boolean fLdapSecurity = false; if ((param != null) && (param.equals("on"))) { info.put("ldapSecurity", "on"); fLdapSecurity = true; } else { info.put("ldapSecurity", "off"); } // Need to open an LDAPConnection for the ConsoleInfo object. try { LDAPConnection ldapConnection = createLDAPConnection(info); if (ldapConnection == null) { return LDAP_INIT_BIND_FAIL; } info.setLDAPConnection(ldapConnection); } catch (LDAPException le) { // DT 5/19/98 Prompt user to restart the registry DS if ldc.connect() failed String dsURL = (fLdapSecurity ? "ldaps" : "ldap") + "://" + info.getHost() + ":" + info.getPort(); String msg = MessageFormat.format(_resource.getString("error", "connectDS"), new Object[] { dsURL, le.getMessage() }); Debug.println("Console:authenticate_user():" + msg); if (_dsHasBeenRestarted) { // DS has already been restarted, return an error JOptionPane.showMessageDialog(com.netscape.management.client.console.SplashScreen.getInstance(), msg, _resource.getString("error", "title"), JOptionPane.ERROR_MESSAGE); ModalDialogUtil.sleep(); return LDAP_INIT_FAILED; } Object[] choices = { _resource.getString("error", "restartDSButton"), _resource.getString("error", "cancelButton") }; Object[] msgs = { msg, " ", _resource.getString("error", "restartDSMessage"), " " }; int selection = JOptionPane.showOptionDialog( com.netscape.management.client.console.SplashScreen.getInstance(), msgs, _resource.getString("error", "inittitle"), JOptionPane.DEFAULT_OPTION, JOptionPane.QUESTION_MESSAGE, null, choices, choices[0]); if (selection == 1) System.exit(1); // cancel // Pop a new login dialog, but this is for the Registry DS AS /* RestartDialog rd = new RestartDialog(_frame); rd.setDialogLocation(_frame); rd.showModal(); if (rd.isCancel()) System.exit(0); _splashScreen.toFront(); if (!restartDirectoryServer(rd.getUsername(), rd.getPassword(), rd.getURL())) { return LDAP_INIT_FAILED; } else { msg = _resource.getString("info","restartDS"); JOptionPane.showMessageDialog( com.netscape.management.client.console.SplashScreen.getInstance(), msg, _resource.getString("info","restartDSTitle"), JOptionPane.INFORMATION_MESSAGE); _dsHasBeenRestarted = true; return LDAP_INIT_DS_RESTART; } */ } // set up user data base information // If config DS is unaccessable when authenticate CGI is called, the CGI returns ? for UserDirectory if ((param = (ht.get("UserDirectory"))) != null && !param.equals("?")) { // this caused I18n problem - param=param.toLowerCase(); LDAPConnection ldc = null; boolean fSSL = false; String sHost = info.getHost(); int iPort = info.getPort(); String sBaseDN = info.getBaseDN(); int iStartSearch = 7; if (param.startsWith("ldaps://")) { fSSL = true; iStartSearch = 8; } int iNextSlash = param.indexOf('/', 8); int iNextColon = param.indexOf(':', 8); int iNextSpace = param.indexOf(' ', 8); //for failover list // if failover list, use the first host and port in the list if ((iNextSlash > iNextColon) && (iNextColon != (-1))) { // has a port number if ((iNextSpace != (-1)) && (iNextSpace < iNextSlash)) { // failover list iPort = Integer.parseInt(param.substring(iNextColon + 1, iNextSpace)); } else { iPort = Integer.parseInt(param.substring(iNextColon + 1, iNextSlash)); } sHost = param.substring(iStartSearch, iNextColon); } else { sHost = param.substring(iStartSearch, iNextSlash); } sBaseDN = param.substring(iNextSlash + 1); info.setUserHost(sHost); info.setUserPort(iPort); info.setUserBaseDN(sBaseDN); if (fSSL) { ldc = new KingpinLDAPConnection(UtilConsoleGlobals.getLDAPSSLSocketFactory(), info.getAuthenticationDN(), info.getAuthenticationPassword()); } else { ldc = new KingpinLDAPConnection(info.getAuthenticationDN(), info.getAuthenticationPassword()); } try { ldc.connect(info.getUserHost(), info.getUserPort()); ldc.authenticate(LDAPUtil.LDAP_VERSION, info.getAuthenticationDN(), info.getAuthenticationPassword()); } catch (Exception e) { // catch no user exception Debug.println("Console: cannot connect to the user database"); } info.setUserLDAPConnection(ldc); } else Debug.println("Console.authenticate_user():UserDirectory value not found"); return LDAP_INIT_OK; }
From source file:edu.mayo.informatics.lexgrid.convert.directConversions.hl7.HL7MapToLexGrid.java
void loadRelations(CodingScheme csclass, String driver, Hashtable<Integer, Entity> internalId2codeMap) { Connection connection = null; ResultSet association_results = null; try {//from w w w .j av a 2s .c o m connection = DBUtility.connectToDatabase(accessConnectionString, driver, null, null); PreparedStatement relationship_ps = connection.prepareStatement( "SELECT distinct relationCode, sourceInternalId, targetInternalId FROM VCS_concept_relationship"); association_results = relationship_ps.executeQuery(); while (association_results.next()) { int source = association_results.getInt("sourceInternalId"); int target = association_results.getInt("targetInternalId"); String association = association_results.getString("relationCode"); AssociationPredicate parent_association = (AssociationPredicate) RelationsUtil .resolveAssociationPredicates(csclass, association).get(0); Entity sourceEntity = internalId2codeMap.get(Integer.valueOf(source)); Entity targetEntity = internalId2codeMap.get(Integer.valueOf(target)); if (sourceEntity != null && targetEntity != null) { AssociationSource ai = new AssociationSource(); ai.setSourceEntityCode(sourceEntity.getEntityCode()); ai.setSourceEntityCodeNamespace(csclass.getCodingSchemeName()); ai = RelationsUtil.subsume(parent_association, ai); AssociationTarget at = new AssociationTarget(); at.setTargetEntityCode(targetEntity.getEntityCode()); at.setTargetEntityCodeNamespace(csclass.getCodingSchemeName()); at = RelationsUtil.subsume(ai, at); } } } catch (SQLException e) { messages_.error("Failed while getting HL7 relations from the RIM database", e); e.printStackTrace(); } catch (Exception e) { messages_.debug( "Error occurred while connecting to the RIM database. " + accessConnectionString + driver); e.printStackTrace(); } finally { try { association_results.close(); connection.close(); } catch (SQLException e) { messages_.debug("An error occurred while closing the MS Access connections."); e.printStackTrace(); } } }
From source file:com.eleybourn.bookcatalogue.utils.Utils.java
/** * Remove series from the list where the names are the same, but one entry has a null or empty position. * eg. the followig list should be processed as indicated: * // w w w . ja va 2 s . c o m * fred(5) * fred <-- delete * bill <-- delete * bill <-- delete * bill(1) * * @param list */ public static boolean pruneSeriesList(ArrayList<Series> list) { ArrayList<Series> toDelete = new ArrayList<Series>(); Hashtable<String, Series> index = new Hashtable<String, Series>(); for (Series s : list) { final boolean emptyNum = s.num == null || s.num.trim().equals(""); final String lcName = s.name.trim().toLowerCase(); final boolean inNames = index.containsKey(lcName); if (!inNames) { // Just add and continue index.put(lcName, s); } else { // See if we can purge either if (emptyNum) { // Always delete series with empty numbers if an equally or more specific one exists toDelete.add(s); } else { // See if the one in 'index' also has a num Series orig = index.get(lcName); if (orig.num == null || orig.num.trim().equals("")) { // Replace with this one, and mark orig for delete index.put(lcName, s); toDelete.add(orig); } else { // Both have numbers. See if they are the same. if (s.num.trim().toLowerCase().equals(orig.num.trim().toLowerCase())) { // Same exact series, delete this one toDelete.add(s); } else { // Nothing to do: this is a different series position } } } } } for (Series s : toDelete) list.remove(s); return (toDelete.size() > 0); }
From source file:edu.ku.brc.specify.tasks.ExpressSearchTask.java
public synchronized void exectionDone(final SQLExecutionProcessor process, final ResultSet resultSet) { if (!sqlHasResults) { try {// w w w . ja v a 2 s . c o m sqlHasResults = resultSet.first(); } catch (SQLException ex) { ex.printStackTrace(); edu.ku.brc.af.core.UsageTracker.incrSQLUsageCount(); edu.ku.brc.exceptions.ExceptionTracker.getInstance().capture(ExpressSearchTask.class, ex); } } sqlProcessorList.remove(process); Object[] data = (Object[]) process.getData(); if (data != null) { if (data.length == 3) { SearchTableConfig searchTableConfig = (SearchTableConfig) data[0]; ExpressSearchResultsPaneIFace esrPane = (ExpressSearchResultsPaneIFace) data[1]; String searchTerm = (String) data[2]; Hashtable<String, ExpressResultsTableInfo> idToTableInfoHash = ExpressSearchConfigCache .getSearchIdToTableInfoHash(); Hashtable<String, List<ExpressResultsTableInfo>> joinIdToTableInfohash = ExpressSearchConfigCache .getJoinIdToTableInfoHash(); Hashtable<String, QueryForIdResultsSQL> resultsForJoinsHash = new Hashtable<String, QueryForIdResultsSQL>(); try { if (resultSet.next()) { String searchIdStr = Integer.toString(searchTableConfig.getTableInfo().getTableId()); ExpressResultsTableInfo tblInfo = idToTableInfoHash.get(searchIdStr); if (tblInfo == null) { throw new RuntimeException("Bad id from search[" + searchIdStr + "]"); } SearchConfig config = SearchConfigService.getInstance().getSearchConfig(); int cnt = 0; do { if (cnt < RESULTS_THRESHOLD) { collectResults(config, tblInfo.getTableId(), searchTerm, resultSet, null, joinIdToTableInfohash, resultsForJoinsHash); } cnt++; } while (resultSet.next()); //System.err.println("SQLExecutionProcessor: "+cnt); if (cnt >= RESULTS_THRESHOLD) { String reason = String.format( getResourceString("ExpressSearchTask.MAX_SEARCH_RESULTS_EXCEEDED"), RESULTS_THRESHOLD, cnt); if (searchWarningsResults == null) { searchWarningsResults = new SIQueryForIdResults(); searchWarningsResults.addReason(searchTableConfig, reason); displayResults(esrPane, searchWarningsResults, resultsForJoinsHash); } else { searchWarningsResults.addReason(searchTableConfig, reason); } } if (resultsForJoinsHash.size() > 0) { QueryForIdResultsSQL queryResults = new QueryForIdResultsSQL(searchIdStr, null, tblInfo, searchTableConfig.getDisplayOrder(), searchTerm); displayResults(esrPane, queryResults, resultsForJoinsHash); } } } catch (SQLException ex) { edu.ku.brc.af.core.UsageTracker.incrSQLUsageCount(); edu.ku.brc.exceptions.ExceptionTracker.getInstance().capture(ExpressSearchTask.class, ex); ex.printStackTrace(); } } } }
From source file:edu.ku.brc.specify.tools.schemalocale.SchemaLocalizerXMLHelper.java
/** * @param discipline//from ww w .j a v a 2s. c o m * @param extFile * @param useCurrentLocaleOnly * @return */ @SuppressWarnings("unchecked") protected Vector<DisciplineBasedContainer> load(final String discipline, final File extFile, final boolean useCurrentLocaleOnly) { Vector<DisciplineBasedContainer> containers = null; XStream xstream = new XStream(); configXStream(xstream); try { String fullPath = (discipline != null ? (discipline + File.separator) : "") + fileName[schemaType]; File file = extFile != null ? extFile : XMLHelper.getConfigDir(fullPath); if (file.exists()) { if (discipline == null) { inputFile = file; } InputStreamReader inpStrmReader = new InputStreamReader(new FileInputStream(file), "UTF8"); containers = (Vector<DisciplineBasedContainer>) xstream.fromXML(inpStrmReader); if (discipline != null) { return containers; } } if (useCurrentLocaleOnly && containers != null && containers.size() > 0) { String language = Locale.getDefault().getLanguage(); addMissingTranslations(language, containers); stripToSingleLocale(language, containers); } // remove non-english locales /*if (false) { if (discipline == null) { for (DisciplineBasedContainer dbc : containers) { for (SpLocaleContainerItem sci : dbc.getItems()) { for (SpLocaleItemStr n : new Vector<SpLocaleItemStr>(sci.getNames())) { if (!n.getLanguage().equals("en")) { sci.getNames().remove(n); changesMadeDuringStartup = true; } } for (SpLocaleItemStr d : new Vector<SpLocaleItemStr>(sci.getDescs())) { if (!d.getLanguage().equals("en")) { sci.getDescs().remove(d); changesMadeDuringStartup = true; } } } for (SpLocaleItemStr n : new Vector<SpLocaleItemStr>(dbc.getNames())) { if (!n.getLanguage().equals("en")) { dbc.getNames().remove(n); changesMadeDuringStartup = true; } } for (SpLocaleItemStr d : new Vector<SpLocaleItemStr>(dbc.getDescs())) { if (!d.getLanguage().equals("en")) { dbc.getDescs().remove(d); changesMadeDuringStartup = true; } } } } } if (false) { if (discipline == null) { Hashtable<String, Boolean> fieldsToHideHash = new Hashtable<String, Boolean>(); String[] fields = { "version", "timestampCreated", "timestampModified", "createdByAgent", "modifiedByAgent", "collectionMemberId", "visibility", "visibilitySetBy"}; for (String fieldName : fields) { fieldsToHideHash.put(fieldName, true); } for (DisciplineBasedContainer dbc : containers) { for (SpLocaleContainerItem sci : dbc.getItems()) { String nm = sci.getName(); if (fieldsToHideHash.get(nm) != null) { sci.setIsHidden(true); } else if (nm.startsWith("yesNo")) { sci.setIsHidden(true); } else if (nm.startsWith("text") && StringUtils.isNumeric(nm.substring(nm.length()-1, nm.length()))) { //System.out.println(nm); sci.setIsHidden(true); } else if (nm.startsWith("number") && StringUtils.isNumeric(nm.substring(nm.length()-1, nm.length()))) { System.out.println(nm); sci.setIsHidden(true); } } } } }*/ if (containers != null) { for (SpLocaleContainer ct : containers) { Hashtable<String, Boolean> hash = new Hashtable<String, Boolean>(); for (SpLocaleContainerItem item : new Vector<SpLocaleContainerItem>(ct.getItems())) { if (hash.get(item.getName()) == null) { hash.put(item.getName(), true); } else { log.debug("Removing Duplicate[" + item.getName() + "]"); ct.getItems().remove(item); } } } tableDisplayItems = new Vector<LocalizableJListItem>(); for (SpLocaleContainer cont : containers) { LocalizableJListItem item = new LocalizableJListItem(cont.getName(), cont.getId(), null); tableDisplayItems.add(item); //System.out.println("["+cont.getName()+"]"); tableDisplayItemsHash.put(cont.getName(), item); tableHash.put(cont.getName(), cont); } Collections.sort(tableDisplayItems); log.info("Syncing with Datamodel.... (ignore errors)"); changesBuffer.append("<Center><table border=\"1\">"); String lang = SchemaI18NService.getCurrentLocale().getLanguage(); discoverLocalesFromData(containers); if (availLocales.size() == 1) { lang = availLocales.get(0).getLanguage(); } else { Vector<DisplayLocale> list = new Vector<DisplayLocale>(); for (Locale locale : availLocales) { list.add(new DisplayLocale(locale)); } Collections.sort(list); boolean cont = false; while (cont) { ToggleButtonChooserDlg<DisplayLocale> dlg = new ToggleButtonChooserDlg<DisplayLocale>( (Dialog) null, "CHOOSE_LOCALE", list, ToggleButtonChooserPanel.Type.RadioButton); dlg.setUseScrollPane(true); dlg.setVisible(true); cont = dlg.isCancelled(); if (!cont) { lang = dlg.getSelectedObject().getLocale().getLanguage(); } } } log.info("Adding New Tables and fields...."); for (DBTableInfo ti : tableMgr.getTables()) { DisciplineBasedContainer container = (DisciplineBasedContainer) tableHash.get(ti.getName()); if (container == null) { // OK, table has been Localized, so add it. container = new DisciplineBasedContainer(); container.initialize(); container.setName(ti.getName()); SpLocaleItemStr nameStr = new SpLocaleItemStr(); nameStr.initialize(); nameStr.setText(UIHelper.makeNamePretty(ti.getShortClassName())); nameStr.setLanguage(lang); container.addName(nameStr); log.info("Adding Table [" + ti.getName() + "]"); changesMadeDuringStartup = true; changesBuffer.append("<tr><td align=\"center\">Added</td>"); changesBuffer.append("<td align=\"center\">"); changesBuffer.append(ti.getName()); changesBuffer.append("</td><td> </td></tr>"); tableHash.put(container.getName(), container); containers.add(container); LocalizableJListItem jItem = new LocalizableJListItem(container.getName(), container.getId(), null); tableDisplayItems.add(jItem); tableDisplayItemsHash.put(container.getName(), jItem); for (DBFieldInfo fi : ti.getFields()) { SpLocaleContainerItem item = new SpLocaleContainerItem(); item.initialize(); item.setName(fi.getName()); item.setWebLinkName(fi.getWebLinkName()); item.setIsRequired(fi.isRequired()); item.setIsHidden(fi.isHidden()); nameStr = new SpLocaleItemStr(); nameStr.initialize(); //nameStr.setText(UIHelper.makeNamePretty(fi.getDataClass().getSimpleName())); nameStr.setText(UIHelper.makeNamePretty(fi.getName())); nameStr.setLanguage(lang); item.addName(nameStr); log.info(" Adding Field [" + fi.getName() + "]"); changesBuffer.append("<tr><td align=\"center\">Added</td>"); changesBuffer.append("<td align=\"center\"> </td><td align=\"center\">"); changesBuffer.append(fi.getName()); changesBuffer.append("</td></tr>"); item.setIsRequired(fi.isRequired()); container.addItem(item); } for (DBRelationshipInfo ri : ti.getRelationships()) { SpLocaleContainerItem item = new SpLocaleContainerItem(); item.initialize(); item.setName(ri.getName()); item.setIsRequired(false); log.info(" Adding Field [" + ri.getName() + "]"); changesBuffer.append("<tr><td align=\"center\">Added</td>"); changesBuffer.append("<td align=\"center\"> </td><td align=\"center\">"); changesBuffer.append(ri.getName()); changesBuffer.append("</td></tr>"); container.addItem(item); } } else { // Look for existing Field for (DBFieldInfo fi : ti.getFields()) { SpLocaleContainerItem item = (SpLocaleContainerItem) container .getItemByName(fi.getName()); if (item == null) { item = new SpLocaleContainerItem(); item.initialize(); item.setName(fi.getName()); item.setIsRequired(fi.isRequired()); item.setIsHidden(fi.isHidden()); SpLocaleItemStr nameStr = new SpLocaleItemStr(); nameStr.initialize(); nameStr.setText(UIHelper.makeNamePretty(fi.getName())); nameStr.setLanguage(lang); item.addName(nameStr); container.addItem(item); log.info("For Table[" + ti.getName() + "] Adding Field [" + fi.getName() + "]"); changesMadeDuringStartup = true; changesBuffer.append("<tr><td align=\"center\">Added</td>"); changesBuffer.append( "<td align=\"center\">" + ti.getName() + "</td><td align=\"center\">"); changesBuffer.append(fi.getName()); changesBuffer.append("</td></tr>"); } else if (doFixNames) { Class<?> cls = fi.getDataClass(); if (cls != null) { String name = UIHelper.makeNamePretty(fi.getDataClass().getSimpleName()); for (SpLocaleItemStr str : item.getNames()) { if (name.equals(str.getText())) { str.setText(UIHelper.makeNamePretty(fi.getName())); changesMadeDuringStartup = true; changesBuffer.append("<tr><td align=\"center\">Fixed Name</td>"); changesBuffer.append("<td align=\"center\">" + ti.getName() + "</td><td align=\"center\">"); changesBuffer.append(fi.getName()); changesBuffer.append("</td></tr>"); } } } else { log.error("Data Class is null for field[" + fi.getColumn() + "]"); } } else { //item.setIsRequired(fi.isRequired()); } } for (DBRelationshipInfo ri : ti.getRelationships()) { SpLocaleContainerItem item = (SpLocaleContainerItem) container .getItemByName(ri.getName()); if (item == null) { item = new SpLocaleContainerItem(); item.initialize(); item.setName(ri.getName()); container.addItem(item); SpLocaleItemStr nameStr = new SpLocaleItemStr(); nameStr.initialize(); nameStr.setText(UIHelper.makeNamePretty(ri.getName())); nameStr.setLanguage(lang); item.addName(nameStr); log.info("For Table[" + ti.getName() + "] Adding Rel [" + ri.getName() + "]"); changesMadeDuringStartup = true; changesBuffer.append("<tr><td align=\"center\">Added</td>"); changesBuffer.append( "<td align=\"center\">" + ti.getName() + "</td><td align=\"center\">"); changesBuffer.append(ri.getName()); changesBuffer.append("</td></tr>"); } else { if (item.getNames().size() == 0) { SpLocaleItemStr nameStr = new SpLocaleItemStr(); nameStr.initialize(); nameStr.setText(UIHelper.makeNamePretty(ri.getName())); nameStr.setLanguage(lang); item.addName(nameStr); changesMadeDuringStartup = true; changesBuffer.append("<tr><td align=\"center\">Added</td>"); changesBuffer.append( "<td align=\"center\">" + ti.getName() + "</td><td align=\"center\">"); changesBuffer.append(ri.getName()); changesBuffer.append("</td></tr>"); } } } } } log.info("Removing Old Tables and fields...."); for (SpLocaleContainer container : new Vector<DisciplineBasedContainer>(containers)) { DBTableInfo ti = tableMgr.getInfoByTableName(container.getName()); if (ti == null) { log.info("Removing Table [" + container.getName() + "] from Schema"); containers.remove(container); tableHash.remove(container.getName()); changesMadeDuringStartup = true; changesBuffer.append("<tr><td align=\"center\">Removed</td>"); changesBuffer.append("<td align=\"center\">"); changesBuffer.append(container.getName()); changesBuffer.append("</td><td> </td></tr>"); } else { for (LocalizableItemIFace itemIF : new Vector<LocalizableItemIFace>( container.getContainerItems())) { SpLocaleContainerItem item = (SpLocaleContainerItem) itemIF; DBTableChildIFace tblChild = ti.getItemByName(item.getName()); if (tblChild == null) { container.removeItem(item); //log.info("For Table["+ti.getName()+"] Removing Rel ["+item.getName()+"]"); changesMadeDuringStartup = true; changesBuffer.append("<tr><td align=\"center\" color=\"red\">Removed</td>"); changesBuffer.append( "<td align=\"center\">" + ti.getName() + "</td><td align=\"center\">"); changesBuffer.append(item.getName()); changesBuffer.append("</td></tr>"); } } } } changesBuffer.append("</table>"); } else { log.info("There were no containers for [" + file.getAbsolutePath() + "]"); } // Force the hidden of special fields /*if (false) { String[] fieldsToHide = {"timestampCreated","timestampModified", "createdByAgent","modifiedByAgent","version", "collectionMemberId"}; Hashtable<String, Boolean> hash = new Hashtable<String, Boolean>(); for (String fName : fieldsToHide) { hash.put(fName, Boolean.TRUE); } for (DBTableInfo ti : tableMgr.getTables()) { DisciplineBasedContainer container = (DisciplineBasedContainer)tableHash.get(ti.getName()); if (container != null) { for (SpLocaleContainerItem item : container.getItems()) { if (hash.get(item.getName()) != null) { item.setIsHidden(Boolean.TRUE); } } } } }*/ } catch (IOException ex) { edu.ku.brc.af.core.UsageTracker.incrHandledUsageCount(); edu.ku.brc.exceptions.ExceptionTracker.getInstance().capture(SchemaLocalizerXMLHelper.class, ex); ex.printStackTrace(); } catch (Exception ex) { UIRegistry.showError("There was a problem reading the XML in the file."); // I18N } return containers; }
From source file:edu.eurac.commul.pepperModules.mmax2.Salt2MMAX2Mapper.java
private SaltExtendedMarkable mapStruct(SStructure struct) throws MMAX2WrapperException { ArrayList<SaltExtendedMarkable> sDomRelMarkableList = new ArrayList<SaltExtendedMarkable>(); Hashtable<SaltExtendedMarkable, SRelationMapping> sDomRelMarkableHash = new Hashtable<SaltExtendedMarkable, SRelationMapping>(); ArrayList<String> spans = new ArrayList<String>(); for (SRelation rel : getDocument().getDocumentGraph().getOutRelations(struct.getId())) { if (rel instanceof SDominanceRelation) { SDominanceRelation sDomRel = (SDominanceRelation) rel; SaltExtendedMarkable sDomRelMarkable = getSRelationMarkable(sDomRel); spans.add(sDomRelMarkable.getSpan()); SRelationMapping validated = matchSRelation(sDomRel); sDomRelMarkableList.add(sDomRelMarkable); if (validated != null) { sDomRelMarkableHash.put(sDomRelMarkable, validated); }/*from w w w.j a v a 2 s.c o m*/ } } SaltExtendedMarkable markable = createMarkableForSNode(getNewId(), makeSpan(spans), struct, SaltExtendedMmax2Infos.SALT_INFO_TYPE_SSTRUCT); for (SaltExtendedMarkable sDomRelMarkable : sDomRelMarkableList) { if (sDomRelMarkableHash.containsKey(sDomRelMarkable)) { SRelationMapping validated = sDomRelMarkableHash.get(sDomRelMarkable); SaltExtendedMarkable containerSourceMarkable = getSContainerMarkable(markable, validated.getSourceAssociatedSchemeName(), markable.getSpan(), markable.getSName(), markable.getId(), markable.getId(), markable.getFactory().getScheme().getName()); addPointerAttribute(containerSourceMarkable, validated.getSourceAssociatedSchemeName(), validated.getTargetAssociatedSchemeName(), validated.getPointedAssociatedAttributeName(), sDomRelMarkable.getAttribute("id_target").getValue()); sDomRelMarkable.removeAttribute(sDomRelMarkable.getAttribute("id_target")); addFreetextAttribute(sDomRelMarkable, SaltExtendedMmax2Infos.SALT_INFO_TYPE_SDOMINANCE_REL, "struct_attr", validated.getPointedAssociatedAttributeName()); addFreetextAttribute(sDomRelMarkable, SaltExtendedMmax2Infos.SALT_INFO_TYPE_SDOMINANCE_REL, "struct_scheme", validated.getSourceAssociatedSchemeName()); addFreetextAttribute(sDomRelMarkable, SaltExtendedMmax2Infos.SALT_INFO_TYPE_SDOMINANCE_REL, "struct", containerSourceMarkable.getId()); } else { addPointerAttribute(sDomRelMarkable, SaltExtendedMmax2Infos.SALT_INFO_TYPE_SDOMINANCE_REL, SaltExtendedMmax2Infos.SALT_INFO_TYPE_SSTRUCT, "struct", markable.getId()); } } return markable; }
From source file:edu.ku.brc.specify.conversion.ConvertTaxonHelper.java
/** * Converts the taxonomy tree definition from the old taxonomicunittype table to the new table * pair: TaxonTreeDef & TaxonTreeDefItems. * //from ww w .j ava2 s . c om * @param taxonomyTypeId the tree def id in taxonomicunittype * @return the TaxonTreeDef object * @throws SQLException */ public void convertTaxonTreeDefinition(final CollectionInfo colInfo) { if (!colInfo.isInUse()) { return; } TaxonTreeDef taxonTreeDef = newTaxonInfoHash.get(colInfo.getTaxonNameId()); if (taxonTreeDef != null) { colInfo.setTaxonTreeDef(taxonTreeDef); return; } Integer oldTaxonRootId = colInfo.getTaxonNameId(); Integer taxonomyTypeId = colInfo.getTaxonomyTypeId(); try { Statement st = oldDBConn.createStatement(ResultSet.TYPE_SCROLL_INSENSITIVE, ResultSet.CONCUR_READ_ONLY); taxonTreeDef = new TaxonTreeDef(); taxonTreeDef.initialize(); String sql = "SELECT TaxonomyTypeName, KingdomID FROM taxonomytype WHERE TaxonomyTypeID = " + taxonomyTypeId; log.debug(sql); ResultSet rs = st.executeQuery(sql); rs.next(); String taxonomyTypeName = rs.getString(1); int kingdomID = rs.getInt(2); rs.close(); taxonTreeDef.setName(taxonomyTypeName + " taxonomy tree"); taxonTreeDef.setRemarks("Tree converted from " + oldDBName); taxonTreeDef.setFullNameDirection(TreeDefIface.FORWARD); sql = String.format( "SELECT RankID, RankName, RequiredParentRankID, TaxonomicUnitTypeID FROM taxonomicunittype " + "WHERE TaxonomyTypeID = %d AND (Kingdom = %d OR RankID = 0) ORDER BY RankID", taxonomyTypeId, kingdomID); log.debug(sql); rs = st.executeQuery(sql); Hashtable<Integer, Integer> rankId2TxnUntTypId = new Hashtable<Integer, Integer>(); int rank; String name; int requiredRank; Vector<TaxonTreeDefItem> items = new Vector<TaxonTreeDefItem>(); Vector<Integer> enforcedRanks = new Vector<Integer>(); while (rs.next()) { rank = rs.getInt(1); name = rs.getString(2); requiredRank = rs.getInt(3); int taxUnitTypeId = rs.getInt(4); if (StringUtils.isEmpty(name) || (rank > 0 && requiredRank == 0)) { continue; } if (rankId2TxnUntTypId.get(rank) != null) { String msg = String.format( "Old TreeDef has two of the same Rank %d, throwing it out.\n\nYou must fix this before proceeding.", rank); tblWriter.logError(msg); log.debug(msg); UIRegistry.displayErrorDlg(msg); System.exit(0); } rankId2TxnUntTypId.put(rank, taxUnitTypeId); log.debug(rank + " " + name + " TaxonomicUnitTypeID: " + taxUnitTypeId); TaxonTreeDefItem ttdi = new TaxonTreeDefItem(); ttdi.initialize(); ttdi.setName(name); ttdi.setFullNameSeparator(" "); ttdi.setRankId(rank); ttdi.setTreeDef(taxonTreeDef); taxonTreeDef.getTreeDefItems().add(ttdi); ttdi.setIsInFullName(rank >= TaxonTreeDef.GENUS); // setup the parent/child relationship if (items.isEmpty()) { ttdi.setParent(null); } else { ttdi.setParent(items.lastElement()); } items.add(ttdi); enforcedRanks.add(requiredRank); } rs.close(); for (TaxonTreeDefItem i : items) { i.setIsEnforced(enforcedRanks.contains(i.getRankId())); } try { Session session = HibernateUtil.getNewSession(); Transaction trans = session.beginTransaction(); session.save(taxonTreeDef); trans.commit(); session.close(); } catch (Exception ex) { ex.printStackTrace(); throw new RuntimeException(ex); } IdMapperMgr idMapperMgr = IdMapperMgr.getInstance(); IdMapperIFace tutMapper = idMapperMgr.get("TaxonomicUnitType", "TaxonomicUnitTypeID"); IdMapperIFace taxonomyTypeMapper = idMapperMgr.get("TaxonomyType", "TaxonomyTypeID"); //tutMapper.reset(); //if (taxonomyTypeMapper.get(taxonomyTypeId) == null) //{ taxonomyTypeMapper.put(taxonomyTypeId, taxonTreeDef.getId()); //} for (TaxonTreeDefItem ttdi : taxonTreeDef.getTreeDefItems()) { int ttdiId = rankId2TxnUntTypId.get(ttdi.getRankId()); log.debug("Mapping " + ttdiId + " -> " + ttdi.getId() + " RankId: " + ttdi.getRankId()); tutMapper.put(ttdiId, ttdi.getId()); } newTaxonInfoHash.put(oldTaxonRootId, taxonTreeDef); CollectionInfo ci = getCIByTaxonTypeId(taxonomyTypeId); ci.setTaxonTreeDef(taxonTreeDef); taxonTreeDefHash.put(taxonomyTypeId, taxonTreeDef); log.debug("Hashing taxonomyTypeId: " + taxonomyTypeId + " -> taxonTreeDefId:" + taxonTreeDef.getId()); } catch (SQLException ex) { ex.printStackTrace(); throw new RuntimeException(ex); } }