Example usage for java.util HashSet addAll

Introduction

In this page you can find the example usage for java.util HashSet addAll.

Prototype

boolean addAll(Collection<? extends E> c);

Source Link

Document

Adds all of the elements in the specified collection to this set if they're not already present (optional operation).

Usage

From source file:org.hyperic.hq.authz.server.session.RoleManagerImpl.java

/**
 * List the roles that this subject is not in and that are not one of the
 * specified roles.//from   ww  w .j a va2 s.  c o  m
 * 
 * @param whoami The current running user.
 * @param system If true, then only system roles are returned. If false,
 *        then only non-system roles are returned.
 * @param groupId The id of the subject.
 * @return List of roles.
 * @throws NotFoundException Unable to find a given or dependent entities.
 * @throws PermissionException whoami is not allowed to perform listRoles on
 *         this role.
 * @throws NotFoundException if the sort attribute was not recognized
 * 
 */
@Transactional(readOnly = true)
public PageList<RoleValue> getAvailableGroupRoles(AuthzSubject whoami, Integer groupId, Integer[] roleIds,
        PageControl pc) throws PermissionException, NotFoundException {
    Collection<Role> foundRoles;
    pc = PageControl.initDefaults(pc, SortAttribute.ROLE_NAME);
    int attr = pc.getSortattribute();

    switch (attr) {
    case SortAttribute.ROLE_NAME:
        foundRoles = roleDAO.findAvailableForGroup(false, groupId);
        break;
    default:
        throw new NotFoundException("Unrecognized sort attribute: " + attr);
    }

    log.debug("Found " + foundRoles.size() + " available roles for group " + groupId
            + " before permission checking");

    HashSet<Integer> index = new HashSet<Integer>();
    if (roleIds != null) {
        index.addAll(Arrays.asList(roleIds));
    }

    // Grep out the specified roles
    ArrayList<Role> roles = new ArrayList<Role>();

    for (Role r : foundRoles) {
        if (!index.contains(r.getId())) {
            roles.add(r);
        }
    }

    log.debug("Found " + roles.size() + " available roles for group " + groupId + " after exclusions");

    // AUTHZ Check - filter the viewable roles
    roles = (ArrayList) filterViewableRoles(whoami, roles);

    if (isRootRoleMember(whoami) && pc.getPagenum() == 0 && !index.contains(AuthzConstants.rootRoleId)) {
        foundRoles = roleDAO.findAvailableForGroup(true, groupId);
        for (Role role : foundRoles) {
            if (role.getId().equals(AuthzConstants.rootRoleId)) {
                roles.add(role);
            }
        }
    }

    if (pc.isDescending()) {
        Collections.reverse(roles);
    }

    log.debug("Found " + roles.size() + " available roles for group " + groupId + " after permission checking");

    PageList<RoleValue> plist = rolePager.seek(roles, pc.getPagenum(), pc.getPagesize());
    plist.setTotalSize(roles.size());

    return plist;
}

---

From source file:ch.unil.genescore.pathway.GeneSetLibrary.java

License:asdf

/** calculates the weights  for sampling the genes:
 * /*from   w  ww .  j a va2  s  . co  m*/
 * for each gene x:
 * 1) we use samplingWeightHelper_ to find all gene sets where the gene is present (as gene or as part of metagene)
 * 2) for each of these genesets : we update gene x's samplingWeight by adding 1/(sizeofGeneSet^2)
 * 
 * for each metaGene : replace 1) above with :find all gene sets where any uf the subgene is present.
 *  */
protected void calculateSamplingWeights() {

    calculateSamplingWeightHelper();
    HashSet<GeneSet> gSetSet = null;
    double size;
    double weight;
    for (Gene g : genes_) {
        if (getSamplingWeightHelper().containsKey(g.id_)) {
            gSetSet = getSamplingWeightHelper().get(g.id_);
            for (GeneSet gSet : gSetSet) {
                size = gSet.genes_.size();
                weight = 1.0 / (size * size);
                g.updateSamplingWeight(weight);
            }
        }
    }
    if (metaGenes_ != null) {
        for (MetaGene mg : metaGenes_.values()) {
            gSetSet = new HashSet<GeneSet>();
            for (Gene g : mg.getGenes()) {

                gSetSet.addAll(getSamplingWeightHelper().get(g.id_));
            }
            for (GeneSet gSet : gSetSet) {
                size = gSet.genes_.size();
                weight = 1.0 / (size * size);
                mg.updateSamplingWeight(weight);
            }
        }
    }

}

---

From source file:org.apache.axis.encoding.SerializationContext.java

/**
 * The serialize method uses hrefs to reference all non-primitive
 * values.  These values are stored and serialized by calling
 * outputMultiRefs after the serialize method completes.
 *///www .  j  a  v  a2  s  . c o m
public void outputMultiRefs() throws IOException {
    if (!doMultiRefs || (multiRefValues == null) || soapConstants == SOAPConstants.SOAP12_CONSTANTS)
        return;
    outputMultiRefsFlag = true;
    AttributesImpl attrs = new AttributesImpl();
    attrs.addAttribute("", "", "", "", "");

    String encodingURI = soapConstants.getEncodingURI();
    // explicitly state that this attribute is not a root
    String prefix = getPrefixForURI(encodingURI);
    String root = prefix + ":root";
    attrs.addAttribute(encodingURI, Constants.ATTR_ROOT, root, "CDATA", "0");

    // Make sure we put the encodingStyle on each multiref element we
    // output.
    String encodingStyle;
    if (msgContext != null) {
        encodingStyle = msgContext.getEncodingStyle();
    } else {
        encodingStyle = soapConstants.getEncodingURI();
    }
    String encStyle = getPrefixForURI(soapConstants.getEnvelopeURI()) + ':' + Constants.ATTR_ENCODING_STYLE;
    attrs.addAttribute(soapConstants.getEnvelopeURI(), Constants.ATTR_ENCODING_STYLE, encStyle, "CDATA",
            encodingStyle);

    // Make a copy of the keySet because it could be updated
    // during processing
    HashSet keys = new HashSet();
    keys.addAll(multiRefValues.keySet());
    Iterator i = keys.iterator();
    while (i.hasNext()) {
        while (i.hasNext()) {
            AttributesImpl attrs2 = new AttributesImpl(attrs);
            Object val = i.next();
            MultiRefItem mri = (MultiRefItem) multiRefValues.get(val);
            attrs2.setAttribute(0, "", Constants.ATTR_ID, "id", "CDATA", mri.id);

            forceSer = mri.value;

            // Now serialize the value.
            // The sendType parameter is defaulted for interop purposes.
            // Some of the remote services do not know how to
            // ascertain the type in these circumstances (though Axis does).
            serialize(multirefQName, attrs2, mri.value, mri.xmlType, null, this.sendNull, Boolean.TRUE); // mri.sendType
        }

        // Done processing the iterated values.  During the serialization
        // of the values, we may have run into new nested values.  These
        // were placed in the secondLevelObjects map, which we will now
        // process by changing the iterator to locate these values.
        if (secondLevelObjects != null) {
            i = secondLevelObjects.iterator();
            secondLevelObjects = null;
        }
    }

    // Reset maps and flags
    forceSer = null;
    outputMultiRefsFlag = false;
    multiRefValues = null;
    multiRefIndex = -1;
    secondLevelObjects = null;
}

---

From source file:com.yahoo.ycsb.workloads.MailAppCassandraWorkload.java

public void doTransactionPopDelete(DB db) throws WorkloadException {
    printDebug("------------POP Delete Transaction-------------");
    //choose a random key
    int keynum = nextKeynum();

    String keynameInbox = buildKeyName(keynum, inboxSuffix);

    HashSet<String> fields = null;

    HashSet<String> counterColumnNames = new HashSet<String>();
    counterColumnNames.add(messagecountfieldkey);
    counterColumnNames.add(mailboxsizefieldkey);

    HashMap<String, ByteIterator> counterResult = new HashMap<String, ByteIterator>();
    HashMap<String, ByteIterator> uidlResult = new HashMap<String, ByteIterator>();
    HashMap<String, ByteIterator> result = new HashMap<String, ByteIterator>();

    HashSet<String> uidlKeySet = new HashSet<String>();

    long st = System.nanoTime();

    //read counter Table (POP3 STAT Command)
    db.read(incrementTag + countertable, keynameInbox, counterColumnNames, counterResult);

    int statCount = Integer.valueOf(counterResult.get(messagecountfieldkey).toString());
    if (statCount <= 0) {
        long en = System.nanoTime();
        printDebug("POP Delete: Inbox empty, closing...");
        Measurements.getMeasurements().measure("POP_DELETE-Transaction", (int) ((en - st) / 1000));
        return;//from ww w .j  av a  2 s  . c om
    }
    //get UIDL/LIST-List
    printDebug("POP Delete: reading uidl-List");
    db.read(sizetable, keynameInbox, fields, uidlResult);

    //DELE d-times
    //delete Messages. DB.delete() only allows deletion of whole rows, so  columnNames are appended with delimiter
    //min. deletion: 1, max. deletion: messagecount in Mailbox

    uidlKeySet.addAll(uidlResult.keySet());
    printDebug("POP Read: setting up delete count generator...");
    int deleteCount = getMessageDeleteCountGenerator(0, uidlKeySet.size()).nextInt();
    printDebug("POP Read: deleting " + deleteCount + " messages from " + keynameInbox);
    if (deleteCount > 0) {

        Iterator<String> retrievedIdsIterator = uidlResult.keySet().iterator();
        for (int i = 0; i < deleteCount; i++) {

            String columnNameDelete = hashAndRangeKeyDelimiter + retrievedIdsIterator.next();
            //System.out.println("deleting column: "+columnNameDelete);
            db.delete(mailboxtable, keynameInbox + columnNameDelete);
            db.delete(sizetable, keynameInbox + columnNameDelete);
        }

        //Update Counter
        HashMap<String, ByteIterator> countUpdateValue = new HashMap<String, ByteIterator>();
        countUpdateValue.put(messagecountfieldkey, new StringByteIterator("-" + deleteCount));
        countUpdateValue.put(mailboxsizefieldkey, new StringByteIterator("-" + deleteCount * 100));//100: dummy size

        //indicate use of counterColumns with incremetTag in from of tablename
        db.update(incrementTag + countertable, keynameInbox, countUpdateValue);

    }

    //---

    long en = System.nanoTime();
    Measurements.getMeasurements().measure("POP_DELETE-Transaction", (int) ((en - st) / 1000));

}

---

From source file:com.eTilbudsavis.etasdk.SyncManager.java

private void mergeListsToDb(List<Shoppinglist> serverList, List<Shoppinglist> localList, User user) {

    if (serverList.isEmpty() && localList.isEmpty()) {
        return;// ww w  . j a  va2s. c om
    }

    DbHelper db = DbHelper.getInstance();

    HashMap<String, Shoppinglist> localMap = new HashMap<String, Shoppinglist>();
    HashMap<String, Shoppinglist> serverMap = new HashMap<String, Shoppinglist>();
    HashSet<String> union = new HashSet<String>();

    for (Shoppinglist sl : localList) {
        localMap.put(sl.getId(), sl);
    }

    for (Shoppinglist sl : serverList) {
        serverMap.put(sl.getId(), sl);
    }

    union.addAll(serverMap.keySet());
    union.addAll(localMap.keySet());

    for (String key : union) {

        if (localMap.containsKey(key)) {

            Shoppinglist localSl = localMap.get(key);

            if (serverMap.containsKey(key)) {

                Shoppinglist serverSl = serverMap.get(key);

                if (localSl.getModified().before(serverSl.getModified())) {
                    serverSl.setState(SyncState.SYNCED);
                    mNotification.edit(serverSl);
                    db.editList(serverSl, user);
                    db.cleanShares(serverSl, user);
                } else {
                    // Don't do anything, next iteration will put local changes to API
                }

            } else {
                mNotification.del(localSl);
                for (ShoppinglistItem sli : db.getItems(localSl, user)) {
                    mNotification.del(sli);
                }
                db.deleteItems(localSl.getId(), null, user);
                db.deleteList(localSl, user);
            }

        } else {

            Shoppinglist add = serverMap.get(key);
            add.setState(SyncState.TO_SYNC);
            mNotification.add(add);
            db.insertList(add, user);

        }

    }

    for (Shoppinglist sl : mNotification.getAddedLists()) {
        syncItems(sl, user);
    }

    for (Shoppinglist sl : mNotification.getEditedLists()) {
        syncItems(sl, user);
    }

}

---

From source file:com.eTilbudsavis.etasdk.SyncManager.java

private void mergeItemsToDb(List<ShoppinglistItem> serverItems, List<ShoppinglistItem> localItems, User user) {

    if (serverItems.isEmpty() && localItems.isEmpty()) {
        return;//from w w  w .j  a  v  a2 s.com
    }

    DbHelper db = DbHelper.getInstance();

    HashMap<String, ShoppinglistItem> localMap = new HashMap<String, ShoppinglistItem>();
    HashMap<String, ShoppinglistItem> serverMap = new HashMap<String, ShoppinglistItem>();
    HashSet<String> union = new HashSet<String>();

    for (ShoppinglistItem sli : localItems) {
        localMap.put(sli.getId(), sli);
    }

    for (ShoppinglistItem sli : serverItems) {
        serverMap.put(sli.getId(), sli);
    }

    union.addAll(serverMap.keySet());
    union.addAll(localMap.keySet());

    for (String key : union) {

        if (localMap.containsKey(key)) {

            ShoppinglistItem localSli = localMap.get(key);

            if (serverMap.containsKey(key)) {

                ShoppinglistItem serverSli = serverMap.get(key);

                if (localSli.getModified().before(serverSli.getModified())) {
                    mNotification.edit(serverSli);
                    db.editItem(serverSli, user);

                } else if (!localSli.getMeta().toString().equals(serverSli.getMeta().toString())) {
                    // Migration code, to get comments into the DB
                    mNotification.edit(serverSli);
                    db.editItem(serverSli, user);
                } else if (localSli.equals(serverSli)) {
                    EtaLog.d(TAG, "We have a mismatch");
                }

            } else {
                ShoppinglistItem delSli = localMap.get(key);
                if (delSli.getState() == SyncState.TO_SYNC) {
                    /* 
                     * Item have been added while request was in flight
                     * ignore it for now
                     */
                } else {
                    /* Else delete the item */
                    mNotification.del(delSli);
                    db.deleteItem(delSli, user);
                }
            }

        } else {
            ShoppinglistItem serverSli = serverMap.get(key);
            mNotification.add(serverSli);
            db.insertItem(serverSli, user);
        }
    }

}

---

From source file:org.kuali.kra.award.budget.AwardBudgetServiceImpl.java

public List<AwardBudgetExt> getAllBudgetsForAward(Award award) {
    HashSet<AwardBudgetExt> result = new HashSet<>();
    List<VersionHistory> versions = getVersionHistoryService().loadVersionHistory(Award.class,
            award.getAwardNumber());//w  w  w .  j a  va2s.  c  o m
    for (VersionHistory version : versions) {
        if (version.getSequenceOwnerSequenceNumber() <= award.getSequenceNumber()
                && !(version.getSequenceOwner() == null)
                && !(((Award) version.getSequenceOwner()).getAwardDocument() == null)) {
            result.addAll(((Award) version.getSequenceOwner()).getCurrentVersionBudgets());
        }
    }
    List<AwardBudgetExt> listResult = new ArrayList<>(result);
    Collections.sort(listResult);
    return listResult;
}

---

From source file:com.pinterest.arcee.aws.EC2HostInfoDAOImpl.java

@Override
public Set<String> getTerminatedHosts(Set<String> staleIds) throws Exception {
    HashSet<String> ids = new HashSet<>(staleIds);
    HashSet<String> terminatedHosts = new HashSet<>();
    while (!ids.isEmpty()) {
        DescribeInstancesRequest request = new DescribeInstancesRequest();
        request.setInstanceIds(ids);/*from w  ww  . ja v  a 2 s.com*/
        try {
            do {
                DescribeInstancesResult results = ec2Client.describeInstances(request);
                List<Reservation> reservations = results.getReservations();
                for (Reservation reservation : reservations) {
                    for (Instance instance : reservation.getInstances()) {
                        int stateCode = instance.getState().getCode();
                        String id = instance.getInstanceId();
                        if (stateCode == TERMINATED_CODE || stateCode == STOPPED_CODE) {
                            LOG.info(String.format("Instance %s has already been terminated or stopped.", id));
                            terminatedHosts.add(id);
                        }

                        ids.remove(id);
                    }
                }
                if (results.getNextToken() == null || results.getNextToken().isEmpty()) {
                    break;
                }
                request = new DescribeInstancesRequest();
                request.setInstanceIds(ids);
                request.setNextToken(results.getNextToken());
            } while (true);
            LOG.debug("Cannot find the following ids in AWS:", ids);
            terminatedHosts.addAll(ids);
            return terminatedHosts;
        } catch (AmazonServiceException ex) {
            Collection<String> invalidHostIds = handleInvalidInstanceId(ex);
            ids.removeAll(invalidHostIds);
            // add invalid host ids to the terminated host list.
            terminatedHosts.addAll(invalidHostIds);
        } catch (AmazonClientException ex) {
            LOG.error(String.format("Get AmazonClientException, exit with terminiatedHost %s",
                    terminatedHosts.toString()), ex);
            return terminatedHosts;
        }
    }
    return terminatedHosts;
}

---

From source file:com.thoughtworks.go.config.BasicCruiseConfig.java

@Override
public Set<ResourceConfig> getAllResources() {
    final HashSet<ResourceConfig> resourceConfigs = new HashSet<>();
    accept((pipelineConfig, stageConfig, jobConfig) -> resourceConfigs.addAll(jobConfig.resourceConfigs()));
    for (AgentConfig agent : agents) {
        resourceConfigs.addAll(agent.getResourceConfigs());
    }//from  w w  w.j a  v  a 2  s.c o m
    return resourceConfigs;
}

---

From source file:nl.mpcjanssen.simpletask.Simpletask.java

private void deleteSavedFilter(String prefsName) {
    SharedPreferences saved_filters = getSharedPreferences("filters", MODE_PRIVATE);
    HashSet<String> ids = new HashSet<String>();
    ids.addAll(saved_filters.getStringSet("ids", new HashSet<String>()));
    ids.remove(prefsName);//from  w  ww  .j  a  va  2 s.  c  o  m
    saved_filters.edit().putStringSet("ids", ids).apply();
    SharedPreferences filter_prefs = getSharedPreferences(prefsName, MODE_PRIVATE);
    ActiveFilter deleted_filter = new ActiveFilter();
    deleted_filter.initFromPrefs(filter_prefs);
    filter_prefs.edit().clear().apply();
    File prefs_path = new File(this.getFilesDir(), "../shared_prefs");
    File prefs_xml = new File(prefs_path, prefsName + ".xml");
    final boolean deleted = prefs_xml.delete();
    if (!deleted) {
        Log.w(TAG, "Failed to delete saved filter: " + deleted_filter.getName());
    }
    updateRightDrawer();
}

---

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