Example usage for java.util HashMap keySet

List of usage examples for java.util HashMap keySet

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Introduction

In this page you can find the example usage for java.util HashMap keySet.

Prototype

public Set<K> keySet()

Source Link

Document

Returns a Set view of the keys contained in this map.

Usage

From source file:bookChapter.theoretical.AnalyzeTheoreticalMSMSCalculation.java

private static String printInfo(HashSet<Identify> theBestAndromedaResults,
        HashSet<Identify> theBestSEQUESTResults) {
    ///    bw.write("Score" + "\t" + "LevenshteinDistance" + "\t" + "Sequence" + "\t" + "Charge" + "\t" + "Correct" + "\t" + "Spec" + "\n");
    String result = "";
    HashMap<String, Integer> results_and_levDist = new HashMap<String, Integer>();
    for (Identify andromeda : theBestAndromedaResults) {
        for (Identify sequest : theBestSEQUESTResults) {
            double observedMass = CalculateObservedMass.calculateMass(andromeda.getSpectrum());
            int levenshteinDistance = StringUtils.getLevenshteinDistance(andromeda.getPeptide().getSequence(),
                    sequest.getPeptide().getSequence());
            result = andromeda.getSpectrum().getSpectrumTitle() + "\t"
                    + andromeda.getSpectrum().getPrecursor().getMz() + "\t"
                    + andromeda.getSpectrum().getPrecursor().getPossibleChargesAsString() + "\t" + observedMass
                    + "\t" + andromeda.getScore() + "\t" + sequest.getScore() + "\t"
                    + andromeda.getPeptide().getSequence() + "\t" + sequest.getPeptide().getSequence() + "\t"
                    + levenshteinDistance + "\t" + sequest.getTotalScoredPeps() + "\t"
                    + andromeda.isIsCorrectMatch() + "\t" + sequest.isIsCorrectMatch() + "\n";
            results_and_levDist.put(result, levenshteinDistance);
        }/*from   www  .ja v  a 2s  . c om*/
    }
    int maxDist = Integer.MAX_VALUE, dist = 0;
    for (String res : results_and_levDist.keySet()) {
        dist = results_and_levDist.get(res);
        if (dist < maxDist) {
            result = res;
            maxDist = dist;
        }
    }
    return result;
}

From source file:jsentvar.SubstitutionTest.java

/**
 * Test of oneTerm method, of class Substitution.
 *///from   www  .j a v  a 2s .c o m
@Test
public void testOneTerm() throws IOException {
    System.out.println("Substitution.oneTerm() Test");
    RDFReader lector = new RDFReader();
    String filename;
    //filename = "resources/test/miniReasoner.owl";
    filename = "resources/IEEE_reasoner20022016.owl";
    Model model;
    //String term_value = term_value0.substring(0, 1).toUpperCase() +term_value0.substring(1);

    model = lector.reader(filename);

    //Read positions, a json file
    String possFile = "resources/test/text_doc0.json";
    JsonReader jreader = new JsonReader();
    HashMap<String, HashMap<Integer, Integer>> poss = jreader.reader(possFile);
    /*
    try {
    System.out.println(poss.toString());
    } catch (NullPointerException e) {
    System.out.println("ERROR showing results " + e);
    }
    */
    ArrayList<String> terms1 = new ArrayList<>();

    Set originS = poss.keySet();
    terms1.addAll(originS);

    //Get all the terms for substitution
    /*
    ArrayList<String> terms0 = new ArrayList<>();
            terms0.add("military satellites");
            terms0.add("intelligent_systems");
    */
    Surrogate sur = new Surrogate(model);
    HashMap<String, ArrayList<String>> alternatives;
    Utils utils = new Utils();
    ArrayList<String> terms = utils.firstUpperForeach(terms1);
    alternatives = sur.surrogatesForeach(terms);
    //System.out.println(alternatives.toString());

    String docFile = "resources/test/tex_doc0.txt";
    String doc = FileUtils.readFileToString(new File(docFile), "utf8");
    Substitution gen = new Substitution();
    HashSet newDocs = new HashSet();
    for (String term : terms) {
        System.out.println(term);
        HashSet newDocs0 = gen.oneTerm(doc, term, alternatives.get(term));
        newDocs.addAll(newDocs0);
    }

    String expResult = FileUtils.readFileToString(new File("resources/test/substitutionOneTermResult.txt"),
            "utf8");
    assertEquals(expResult, newDocs.toString());

}

From source file:luceneGazateer.EntryData.java

/**
 * Select the best match for each location name extracted from a document,
 * choosing from among a list of lists of candidate matches. Filter uses the
 * following features: 1) edit distance between name and the resolved name,
 * choose smallest one 2) content (haven't implemented)
 * //from w w w .j a  v a 2  s  .  c  om
 * @param resolvedEntities
 *            final result for the input stream
 * @param allCandidates
 *            each location name may hits several documents, this is the
 *            collection for all hitted documents
 * @throws IOException
 * @throws RuntimeException
 */

private void pickBestCandidates(ArrayList<EntryData> resolvedEntities,
        HashMap<String, ArrayList<ArrayList<String>>> allCandidates) {
    //System.out.println("all candidates:"+ allCandidates.size());
    for (String extractedName : allCandidates.keySet()) {
        ArrayList<ArrayList<String>> cur = allCandidates.get(extractedName);
        int minDistance = Integer.MAX_VALUE, minIndex = -1;
        for (ArrayList<String> entry : cur) {
            resolvedEntities
                    .add(EntryData.getInstance(entry.get(0), entry.get(1), Double.parseDouble(entry.get(2))));
        }

    }
}

From source file:MSUmpire.PSMDataStructure.FragmentSelection.java

public void GenerateTopFragMap(int topNFrag) {
    for (String PepKey : PepFragScore.keySet()) {
        HashMap<String, Float> Frags = PepFragScore.get(PepKey);
        ArrayList<String> frags = new ArrayList<>();
        for (int i = 0; i < topNFrag; i++) {
            float bestscore = 0f;
            String bestfrag = "";
            for (String frag : Frags.keySet()) {
                if (!frags.contains(frag) && Frags.get(frag) > bestscore) {
                    bestscore = Frags.get(frag);
                    bestfrag = frag;/*from w w w . j  a  v  a  2  s. co  m*/
                }
            }
            if (!"".equals(bestfrag)) {
                frags.add(bestfrag);
            }
        }
        TopFrags.put(PepKey, frags);
    }
}

From source file:MSUmpire.PSMDataStructure.FragmentSelection.java

public void GenerateTopPepMap(int topNPep) {
    for (String ProteinKey : ProtPepScore.keySet()) {
        HashMap<String, Float> Peptides = ProtPepScore.get(ProteinKey);
        ArrayList<String> peps = new ArrayList<>();
        for (int i = 0; i < topNPep; i++) {
            float bestscore = 0f;
            String bestpep = "";
            for (String pep : Peptides.keySet()) {
                if (!peps.contains(pep) && Peptides.get(pep) > bestscore) {
                    bestscore = Peptides.get(pep);
                    bestpep = pep;//  w ww  .  j  a  v  a  2 s  . c o  m
                }
            }
            if (!"".equals(bestpep)) {
                peps.add(bestpep);
            }
        }
        TopPeps.put(ProteinKey, peps);
    }
}

From source file:de.hbz.lobid.helper.CompareJsonMaps.java

public boolean writeFileAndTestJson(final JsonNode actual, final JsonNode expected) {
    // generated data to map
    final HashMap<String, String> actualMap = new HashMap<>();
    extractFlatMapFromJsonNode(actual, actualMap);
    // expected data to map
    final HashMap<String, String> expectedMap = new HashMap<>();
    extractFlatMapFromJsonNode(expected, expectedMap);
    CompareJsonMaps.logger.debug("\n##### remove good entries ###");
    Iterator<String> it = actualMap.keySet().iterator();
    removeContext(it);/*from w w w  .  java  2  s .c  om*/
    it = expectedMap.keySet().iterator();
    removeContext(it);
    for (final Entry<String, String> e : expectedMap.entrySet()) {
        CompareJsonMaps.logger.debug("Trying to remove " + e.getKey() + "...");
        if (!actualMap.containsKey(e.getKey())) {
            CompareJsonMaps.logger.warn("At least this element is missing in actual: " + e.getKey());
            return false;
        }
        if (e.getKey().endsWith("Order]")) {
            handleOrderedValues(actualMap, e);
        } else {
            handleUnorderedValues(actualMap, e);
        }
    }
    if (!actualMap.isEmpty()) {
        CompareJsonMaps.logger.warn("Fail - no Equality! These keys/values were NOT expected:");
        actualMap.forEach((key, val) -> CompareJsonMaps.logger.warn("KEY=" + key + " VALUE=" + val));
    } else
        CompareJsonMaps.logger.info("Succeeded - resources are equal");
    return actualMap.size() == 0;
}

From source file:NaraePreference.java

public void put(String key, HashMap<String, String> value) {
    for (String s : value.keySet()) {
        editor.putString(s, value.get(s));
    }//from w w w .  ja  va2 s  .c  o  m
    editor.commit();
    keylist.add(key);
}

From source file:eu.planets_project.tb.impl.AdminManagerImpl.java

private String getKeyFromHashMap(String expTypeName, HashMap<String, String> experimentTypes) {
    Iterator<String> itKeys = experimentTypes.keySet().iterator();
    while (itKeys.hasNext()) {
        String sKey = itKeys.next();
        if (experimentTypes.get(sKey).equals(expTypeName)) {
            return sKey;
        }//from ww w.  j  ava2  s.  c o  m
    }
    return null;
}

From source file:cachedataanalysis.FlowCache.java

public XYSeries exportReportChart() throws IOException {

    File outputHitRate = new File("report/" + name + "_" + policy + "_hitrate.txt");

    FileWriter fw = new FileWriter(outputHitRate);

    XYSeries hitRateCount = new XYSeries(name + "(" + size + " entries)");

    for (int i = 0; i < hitRateRecord.size(); i++) {
        hitRateCount.add(i, hitRateRecord.get(i));
        fw.write(i + "," + hitRateRecord.get(i) + "\n");
        fw.flush();//from w ww .  j a  va 2 s.  com
    }
    fw.close();

    XYSeriesCollection HitRateData = new XYSeriesCollection();
    HitRateData.addSeries(hitRateCount);
    JFreeChart hitRateStat = ChartFactory.createXYLineChart(
            "Hit Rate variatoion throughout recording in " + name, "Seconds", "HitRate", HitRateData,
            PlotOrientation.VERTICAL, true, true, false);

    ChartUtilities.saveChartAsJPEG(new File("report/" + name + "_hitRate" + size + ".jpg"), hitRateStat, 1500,
            900);

    //-------------------------------

    if (!fullReport) {
        return hitRateCount;
    }

    DefaultPieDataset hitProtoData = new DefaultPieDataset();
    DefaultPieDataset missProtoData = new DefaultPieDataset();

    CategoryTableXYDataset hitProtoDataRec = new CategoryTableXYDataset();
    for (int i = 0; i < hitProtoRec.size(); i++) {
        if (i % 120 != 0) {
            continue;
        }
        HashMap<String, Integer> _map = hitProtoRec.get(i);
        for (String _str : _map.keySet()) {
            hitProtoDataRec.add(i, _map.get(_str), _str);
        }

    }

    CategoryTableXYDataset missProtoDataRec = new CategoryTableXYDataset();
    for (int i = 0; i < missProtoRec.size(); i++) {
        if (i % 120 != 0) {
            continue;
        }
        HashMap<String, Integer> _map = missProtoRec.get(i);
        for (String _str : _map.keySet()) {
            missProtoDataRec.add(i, _map.get(_str), _str);
        }

    }

    XYSeries hitCountData = new XYSeries("Hit");
    XYSeries allCountData = new XYSeries("All");

    for (int i = 0; i < hitCount.size(); i++) {
        hitCountData.add(i, hitCount.get(i));
        //hitRateCount.add(i,(float)hitCount.get(i)/(hitCount.get(i)+allCount.get(i)));
    }

    for (int i = 0; i < allCount.size(); i++) {
        allCountData.add(i, allCount.get(i));

    }

    XYSeriesCollection CountStatData = new XYSeriesCollection();

    CountStatData.addSeries(hitCountData);
    CountStatData.addSeries(allCountData);

    for (String protocol : hitProto.keySet()) {
        hitProtoData.setValue(protocol, hitProto.get(protocol));
    }

    for (String protocol : missProto.keySet()) {
        missProtoData.setValue(protocol, missProto.get(protocol));
    }

    JFreeChart hitStatRec = ChartFactory.createStackedXYAreaChart(
            "Hit Protocol Fraction throughout record in " + name, "Seconds", "Count", hitProtoDataRec);

    JFreeChart missStatRec = ChartFactory.createStackedXYAreaChart(
            "Miss Protocol Fraction throughout record in " + name, "Seconds", "Count", missProtoDataRec);

    JFreeChart hitStat = ChartFactory.createPieChart3D("Protocal Fraction of Hit Flows in " + name,
            hitProtoData, true, true, false);
    JFreeChart missStat = ChartFactory.createPieChart3D("Protocal Fraction of Miss Flows in " + name,
            missProtoData, true, true, false);
    JFreeChart countStat = ChartFactory.createXYAreaChart("Hit Count to All Packet lookup in " + name,
            "Seconds", "Count", CountStatData, PlotOrientation.VERTICAL, true, true, false);

    ChartUtilities.saveChartAsJPEG(new File("report/" + name + "_hitProto" + size + ".jpg"), hitStat, 1500,
            900);
    ChartUtilities.saveChartAsJPEG(new File("report/" + name + "_missProto" + size + ".jpg"), missStat, 1500,
            900);
    ChartUtilities.saveChartAsJPEG(new File("report/" + name + "_hitCount" + size + ".jpg"), countStat, 1500,
            900);

    ChartUtilities.saveChartAsJPEG(new File("report/" + name + "_hitProtoRecord" + size + ".jpg"), hitStatRec,
            1500, 900);
    ChartUtilities.saveChartAsJPEG(new File("report/" + name + "_missProtoRecord" + size + ".jpg"), missStatRec,
            1500, 900);

    return hitRateCount;
}

From source file:eu.scape_project.archiventory.identifiers.Identification.java

/**
 * File list identification. Processing a bi-directional map of records
 * where each record has one temporary file and each temporary file has one
 * record key (strict 1:1 relationship).
 *
 * @param fileRecidBidiMap Input { "recordkey" <-> "tempfilename" }
 * @return Output { "recordkey": [ "tool/property/value" ] }
 * @throws IOException//from  w w w .  j  a  v  a2s .c  o  m
 */
public HashMap<String, List<String>> identifyFileList(DualHashBidiMap fileRecidBidiMap) throws IOException {
    HashMap<String, List<String>> resultMap = new HashMap<String, List<String>>();
    Iterator iter = fileRecidBidiMap.keySet().iterator();
    while (iter.hasNext()) {
        String recordKey = (String) iter.next();
        String tmpFileName = (String) fileRecidBidiMap.get(recordKey);
        File file = new File(tmpFileName);
        HashMap idRes = this.identify(file);
        String containerFileName = recordKey.substring(0, recordKey.indexOf("/"));
        String containerIdentifier = recordKey.substring(recordKey.indexOf("/") + 1);
        String outputKey = String.format(outputKeyFormat, containerFileName, containerIdentifier);
        List<String> valueLineList = new ArrayList<String>();
        for (Object k : idRes.keySet()) {
            String property = (String) k;
            String value = (String) idRes.get(k);
            String outputValue = String.format(outputValueFormat, tool, property, value);
            valueLineList.add(outputValue);

        }
        resultMap.put(outputKey, valueLineList);
    }
    return resultMap;
}