List of usage examples for java.util Comparator comparing
public static <T, U extends Comparable<? super U>> Comparator<T> comparing( Function<? super T, ? extends U> keyExtractor)
From source file:org.onosproject.imr.IntentMonitorAndRerouteManager.java
@Override public boolean applyPath(Route route) { checkNotNull(route, "Route to apply must be not null"); checkNotNull(route.appId(), "Application id must be not null"); checkNotNull(route.key(), "Intent key to apply must be not null"); checkNotNull(route.paths(), "New path must be not null"); checkArgument(route.paths().size() >= 1); ApplicationId appId = route.appId(); Key key = route.key();//from w w w . j a va 2s . c o m // check if the app and the intent key are monitored if (!monitoredIntents.containsKey(appId)) { return false; } if (!monitoredIntents.get(appId).containsKey(key)) { return false; } // TODO: now we manage only the unsplittable routing Path currentPath = route.paths().stream().max(Comparator.comparing(Path::weight)).get(); // Check if the last and first element of the path are HostId // in this case remove them from the list if (currentPath.path().get(0) instanceof HostId) { currentPath.path().remove(0); } if (currentPath.path().get(currentPath.path().size() - 1) instanceof HostId) { currentPath.path().remove(currentPath.path().size() - 1); } List<Link> links = createPathFromDeviceList(currentPath.path()); // Generate the new Link collection intent, if not possible it will return the old intent ConnectivityIntent intent = generateLinkCollectionIntent(links, key, appId); storeMonitoredIntent(intent); intentService.submit(intent); return true; }
From source file:org.cgiar.ccafs.marlo.action.powb.CRPStaffingAction.java
@Override public void prepare() throws Exception { // Get current CRP loggedCrp = (GlobalUnit) this.getSession().get(APConstants.SESSION_CRP); loggedCrp = crpManager.getGlobalUnitById(loggedCrp.getId()); // Check history version if (this.getRequest().getParameter(APConstants.TRANSACTION_ID) != null) { this.setPowbSynthesisIdHistory(); } else {// w w w .ja v a 2 s. com this.setPowbSynthesisParameters(); } // Validate draft version if (powbSynthesis != null) { Path path = this.getAutoSaveFilePath(); if (path.toFile().exists() && this.getCurrentUser().isAutoSave()) { this.readJsonAndLoadPowbSynthesis(path); } else { this.setDraft(false); this.createEmptyCrpStaffing(); powbSynthesis .setPowbSynthesisCrpStaffingCategoryList(powbSynthesis.getPowbSynthesisCrpStaffingCategory() .stream().filter(c -> c.isActive()).collect(Collectors.toList())); } } // Get the list of liaison institutions Flagships and PMU. liaisonInstitutions = loggedCrp.getLiaisonInstitutions().stream() .filter(c -> c.getCrpProgram() != null && c.getCrpProgram().getProgramType() == ProgramType.FLAGSHIP_PROGRAM_TYPE.getValue() && c.isActive()) .collect(Collectors.toList()); liaisonInstitutions.addAll(loggedCrp.getLiaisonInstitutions().stream() .filter(c -> c.getCrpProgram() == null && c.getAcronym().equals("PMU") && c.isActive()) .collect(Collectors.toList())); liaisonInstitutions.sort(Comparator.comparing(LiaisonInstitution::getAcronym)); powbCrpStaffingCategories = new ArrayList<>(); powbCrpStaffingCategories = powbCrpStaffingCategoriesManager.findAll().stream().filter(c -> c.isActive()) .collect(Collectors.toList()); if (this.isFlagship()) { PowbSynthesis powbSynthesisDB = powbSynthesisManager.findSynthesis(this.getActualPhase().getId(), liaisonInstitution.getId()); powbSynthesisID = powbSynthesisDB.getId(); } // Base Permission String params[] = { loggedCrp.getAcronym(), powbSynthesis.getId() + "" }; this.setBasePermission(this.getText(Permission.POWB_SYNTHESIS_CRPSTAFFING_BASE_PERMISSION, params)); if (this.isHttpPost()) { if (powbSynthesis.getPowbSynthesisCrpStaffingCategoryList() != null) { powbSynthesis.getPowbSynthesisCrpStaffingCategoryList().clear(); } } }
From source file:org.tightblog.ui.restapi.WeblogController.java
@GetMapping(value = "/tb-ui/authoring/rest/weblogconfig/metadata") public WeblogConfigMetadata getWeblogConfigMetadata(Locale locale, Principal p) { User user = userRepository.findEnabledByUserName(p.getName()); WeblogConfigMetadata metadata = new WeblogConfigMetadata(); metadata.absoluteSiteURL = dp.getAbsoluteUrl(); metadata.usersOverrideAnalyticsCode = webloggerPropertiesRepository.findOrNull() .isUsersOverrideAnalyticsCode(); metadata.usersCommentNotifications = webloggerPropertiesRepository.findOrNull() .isUsersCommentNotifications(); metadata.sharedThemeMap = themeManager.getEnabledSharedThemesList().stream() // Remove sitewide theme options for non-admins, if desired admin can create a sitewide blog // and assign a non-admin user ownership of it on the members page. .filter(theme -> !theme.isSiteWide() || user.hasEffectiveGlobalRole(GlobalRole.ADMIN)) .collect(Utilities.toLinkedHashMap(SharedTheme::getId, st -> st)); metadata.editFormats = Arrays.stream(Weblog.EditFormat.values()).collect(Utilities.toLinkedHashMap( Weblog.EditFormat::name, eF -> messages.getMessage(eF.getDescriptionKey(), null, locale))); metadata.locales = Arrays.stream(Locale.getAvailableLocales()) .sorted(Comparator.comparing(Locale::getDisplayName)) .collect(Utilities.toLinkedHashMap(Locale::toString, Locale::getDisplayName)); metadata.timezones = Arrays.stream(TimeZone.getAvailableIDs()).sorted(Comparator.comparing(tz -> tz)) .collect(Utilities.toLinkedHashMap(tz -> tz, tz -> tz)); WebloggerProperties.CommentPolicy globalCommentPolicy = webloggerPropertiesRepository.findOrNull() .getCommentPolicy();//from w ww . j a v a 2 s. c o m metadata.commentOptions = Arrays.stream(WebloggerProperties.CommentPolicy.values()) .filter(co -> co.getLevel() <= globalCommentPolicy.getLevel()) .collect(Utilities.toLinkedHashMap(WebloggerProperties.CommentPolicy::name, co -> messages.getMessage(co.getWeblogDescription(), null, locale))); metadata.commentDayOptions = Arrays.stream(WeblogEntry.CommentDayOption.values()) .collect(Utilities.toLinkedHashMap(cdo -> Integer.toString(cdo.getDays()), cdo -> messages.getMessage(cdo.getDescriptionKey(), null, locale))); return metadata; }
From source file:org.apache.sysml.hops.codegen.template.CPlanMemoTable.java
public MemoTableEntry getBest(long hopID, TemplateType pref) { List<MemoTableEntry> tmp = get(hopID); if (tmp == null || tmp.isEmpty()) return null; //single plan per type, get plan w/ best rank in preferred order return Collections.min(tmp, Comparator.comparing(p -> (p.type == pref) ? -p.countPlanRefs() : p.type.getRank() + 1)); }
From source file:org.obiba.mica.search.JoinQueryExecutor.java
protected Function<List<MicaSearch.AggregationResultDto>, List<MicaSearch.AggregationResultDto>> aggregationPostProcessor() { return (aggregationResultDtos) -> { Map<String, AggregationResultDto.Builder> buildres = taxonomyService.getOpalTaxonomies().stream() .collect(Collectors.toMap(Taxonomy::getName, t -> { MicaSearch.AggregationResultDto.Builder builder = MicaSearch.AggregationResultDto .newBuilder().setAggregation(t.getName()); t.getTitle().forEach((k, v) -> builder .addTitle(Mica.LocalizedStringDto.newBuilder().setLang(k).setValue(v).build())); return builder; }));/*from ww w. j a v a2 s. c om*/ Pattern pattern = Pattern.compile("attributes-(\\w+)__(\\w+)-\\w+$"); List<MicaSearch.AggregationResultDto> newList = Lists.newArrayList(); // report only aggregations for which we have results List<String> aggregationNames = Lists.newArrayList(); aggregationResultDtos.forEach(dto -> { Matcher matcher = pattern.matcher(dto.getAggregation()); if (matcher.find()) { String taxonomy = matcher.group(1); MicaSearch.AggregationResultDto.Builder builder = buildres.get(taxonomy); builder.addChildren(dto); aggregationNames.add(builder.getAggregation()); } else { newList.add(dto); } }); newList.addAll(buildres.values().stream() // .filter(b -> aggregationNames.contains(b.getAggregation())) // .sorted(Comparator.comparing(AggregationResultDto.Builder::getAggregation)) // .map(MicaSearch.AggregationResultDto.Builder::build) // .collect(Collectors.toList())); // return newList; }; }
From source file:diffhunter.Indexer.java
public void Make_Index(Database hashdb, String file_name, String read_gene_location) throws FileNotFoundException, IOException { Set_Parameters();/* w w w.ja v a2 s .co m*/ //System.out.print("Sasa"); ConcurrentHashMap<String, Map<Integer, Integer>> dic_gene_loc_count = new ConcurrentHashMap<>(); ArrayList<String> lines_from_bed_file = new ArrayList<>(); BufferedReader br = new BufferedReader(new FileReader(file_name)); String line = br.readLine(); List<String> toks = Arrays.asList(line.split("\t")); lines_from_bed_file.add(line); String last_Seen_chromosome = toks.get(0).replace("chr", ""); line = br.readLine(); lines_from_bed_file.add(line); toks = Arrays.asList(line.split("\t")); String new_chromosome = toks.get(0).replace("chr", ""); while (((line = br.readLine()) != null) || lines_from_bed_file.size() > 0) { if (line != null) { toks = Arrays.asList(line.split("\t")); new_chromosome = toks.get(0).replace("chr", ""); } // process the line. if (line == null || !new_chromosome.equals(last_Seen_chromosome)) { System.out.println("Processing chromosome" + "\t" + last_Seen_chromosome); last_Seen_chromosome = new_chromosome; lines_from_bed_file.parallelStream().forEach(content -> { List<String> inner_toks = Arrays.asList(content.split("\t")); //WARNINNG WARNING WARNING WARNINNG WARNING WARNING WARNINNG WARNING WARNING WARNINNG WARNING WARNING WARNINNG WARNING WARNING WARNINNG WARNING WARNING WARNINNG WARNING WARNING WARNINNG WARNING WARNING //STRAND column count should be changed. String strand = inner_toks.get(5); String chromosome_ = inner_toks.get(0).replace("chr", ""); if (!dic_Loc_gene.get(strand).containsKey(chromosome_)) { return; } Integer start_loc = Integer.parseInt(inner_toks.get(1)); Integer end_loc = Integer.parseInt(inner_toks.get(2)); List<Interval<String>> res__ = dic_Loc_gene.get(strand).get(chromosome_).getIntervals(start_loc, end_loc); //IntervalTree<String> pot_gene_name=new IntervalTree<>(res__); // for (int z = 0; z < pot_gene_name.Intervals.Count; z++) //{ for (int z = 0; z < res__.size(); z++) { dic_gene_loc_count.putIfAbsent(res__.get(z).getData(), new HashMap<>()); String gene_symbol = res__.get(z).getData(); Integer temp_gene_start_loc = dic_genes.get(gene_symbol).start_loc; Integer temp_gene_end_loc = dic_genes.get(gene_symbol).end_loc; if (start_loc < temp_gene_start_loc) { start_loc = temp_gene_start_loc; } if (end_loc > temp_gene_end_loc) { end_loc = temp_gene_end_loc; } synchronized (dic_synchrinzer_genes.get(gene_symbol)) { for (int k = start_loc; k <= end_loc; k++) { Integer value_inside = 0; value_inside = dic_gene_loc_count.get(gene_symbol).get(k); dic_gene_loc_count.get(gene_symbol).put(k, value_inside == null ? 1 : (value_inside + 1)); } } } }); /* List<string> keys_ = dic_gene_loc_count.Keys.ToList(); List<string> alt_keys = new List<string>();// dic_gene_loc_count.Keys.ToList(); for (int i = 0; i < keys_.Count; i++) { Dictionary<int, int> dicccc_ = new Dictionary<int, int>(); dic_gene_loc_count[keys_[i]] = new Dictionary<int, int>(dic_gene_loc_count[keys_[i]].Where(x => x.Value >= 2).ToDictionary(x => x.Key, x => x.Value)); if (dic_gene_loc_count[keys_[i]].Count == 0) { dic_gene_loc_count.TryRemove(keys_[i], out dicccc_); continue; } hashdb.Put(Get_BDB(keys_[i]), Get_BDB_Dictionary(dic_gene_loc_count[keys_[i]])); alt_keys.Add(keys_[i]); dic_gene_loc_count.TryRemove(keys_[i], out dicccc_); }*/ ArrayList<String> keys_ = new ArrayList<>(dic_gene_loc_count.keySet()); ArrayList<String> alt_keys = new ArrayList<>(); for (int i = 0; i < keys_.size(); i++) { //LinkedHashMap<Integer, Integer> tmep_map = new LinkedHashMap<>(dic_gene_loc_count.get(keys_.get(i))); LinkedHashMap<Integer, Integer> tmep_map = new LinkedHashMap<>(); /*tmep_map = */ dic_gene_loc_count.get(keys_.get(i)).entrySet().stream().filter(p -> p.getValue() >= 2) .sorted(Comparator.comparing(E -> E.getKey())) .forEach((entry) -> tmep_map.put(entry.getKey(), entry.getValue()));//.collect(Collectors.toMap(p -> p.getKey(), p -> p.getValue())); if (tmep_map.isEmpty()) { dic_gene_loc_count.remove(keys_.get(i)); continue; } //Map<Integer, Integer> tmep_map1 = new LinkedHashMap<>(); //tmep_map1=sortByKey(tmep_map); //tmep_map.entrySet().stream().sorted(Comparator.comparing(E -> E.getKey())).forEach((entry) -> tmep_map1.put(entry.getKey(), entry.getValue())); //BerkeleyDB_Box box=new BerkeleyDB_Box(); hashdb.put(null, BerkeleyDB_Box.Get_BDB(keys_.get(i)), BerkeleyDB_Box.Get_BDB_Dictionary(tmep_map)); alt_keys.add(keys_.get(i)); dic_gene_loc_count.remove(keys_.get(i)); //dic_gene_loc_count.put(keys_.get(i),tmep_map); } hashdb.sync(); int a = 1111; /* hashdb.Sync(); File.AppendAllLines("InputDB\\" + Path.GetFileNameWithoutExtension(file_name) + "_genes.txt", alt_keys); //total_lines_processed_till_now += lines_from_bed_file.Count; //worker.ReportProgress(total_lines_processed_till_now / count_); lines_from_bed_file.Clear(); if (!reader.EndOfStream) { lines_from_bed_file.Add(_line_); } last_Seen_chromosome = new_choromosome;*/ lines_from_bed_file.clear(); if (line != null) { lines_from_bed_file.add(line); } Path p = Paths.get(file_name); file_name = p.getFileName().toString(); BufferedWriter output = new BufferedWriter(new FileWriter((Paths .get(read_gene_location, FilenameUtils.removeExtension(file_name) + ".txt").toString()), true)); for (String alt_key : alt_keys) { output.append(alt_key); output.newLine(); } output.close(); /*if (((line = br.readLine()) != null)) { lines_from_bed_file.add(line); toks=Arrays.asList(line.split("\t")); new_chromosome=toks.get(0).replace("chr", ""); }*/ //last_Seen_chromosome=new_chromosome; } else if (new_chromosome.equals(last_Seen_chromosome)) { lines_from_bed_file.add(line); } } br.close(); hashdb.sync(); hashdb.close(); }
From source file:org.apache.sysml.hops.codegen.template.CPlanMemoTable.java
public MemoTableEntry getBest(long hopID, TemplateType pref1, TemplateType pref2) { List<MemoTableEntry> tmp = get(hopID); if (tmp == null || tmp.isEmpty()) return null; //single plan per type, get plan w/ best rank in preferred order return Collections.min(tmp, Comparator.comparing(p -> (p.type == pref1) ? -p.countPlanRefs() - 4 : (p.type == pref2) ? -p.countPlanRefs() : p.type.getRank() + 1)); }
From source file:org.ballerinalang.docgen.docs.BallerinaDocGenerator.java
private static void sortPackageConstructs(BLangPackage bLangPackage) { bLangPackage.getFunctions().sort(Comparator.comparing( f -> (f.getReceiver() == null ? "" : f.getReceiver().getName()) + f.getName().getValue())); bLangPackage.getAnnotations().sort(Comparator.comparing(a -> a.getName().getValue())); bLangPackage.getTypeDefinitions().sort(Comparator.comparing(a -> a.getName().getValue())); bLangPackage.getGlobalVariables().sort(Comparator.comparing(a -> a.getName().getValue())); }
From source file:org.languagetool.rules.spelling.suggestions.XGBoostSuggestionsOrderer.java
@Override public List<SuggestedReplacement> orderSuggestions(List<String> suggestions, String word, AnalyzedSentence sentence, int startPos) { if (!isMlAvailable()) { throw new IllegalStateException("Illegal call to orderSuggestions() - isMlAvailable() returned false."); }/*from w w w . jav a2 s. c o m*/ long featureStartTime = System.currentTimeMillis(); String langCode = language.getShortCodeWithCountryAndVariant(); Pair<List<SuggestedReplacement>, SortedMap<String, Float>> candidatesAndFeatures = computeFeatures( suggestions, word, sentence, startPos); //System.out.printf("Computing %d features took %d ms.%n", suggestions.size(), System.currentTimeMillis() - featureStartTime); List<SuggestedReplacement> candidates = candidatesAndFeatures.getLeft(); SortedMap<String, Float> matchFeatures = candidatesAndFeatures.getRight(); List<SortedMap<String, Float>> suggestionFeatures = candidates.stream() .map(SuggestedReplacement::getFeatures).collect(Collectors.toList()); if (candidates.isEmpty()) { return Collections.emptyList(); } if (candidates.size() != suggestionFeatures.size()) { throw new RuntimeException( String.format("Mismatch between candidates and corresponding feature list: length %d / %d", candidates.size(), suggestionFeatures.size())); } int numFeatures = matchFeatures.size() + topN * suggestionFeatures.get(0).size(); // padding with zeros float[] data = new float[numFeatures]; int featureIndex = 0; //System.out.printf("Features for match on '%s': %n", word); int expectedMatchFeatures = matchFeatureCount.getOrDefault(langCode, -1); int expectedCandidateFeatures = candidateFeatureCount.getOrDefault(langCode, -1); if (matchFeatures.size() != expectedMatchFeatures) { logger.warn(String.format("Match features '%s' do not have expected size %d.", matchFeatures, expectedMatchFeatures)); } for (Map.Entry<String, Float> feature : matchFeatures.entrySet()) { //System.out.printf("%s = %f%n", feature.getKey(), feature.getValue()); data[featureIndex++] = feature.getValue(); } //int suggestionIndex = 0; for (SortedMap<String, Float> candidateFeatures : suggestionFeatures) { if (candidateFeatures.size() != expectedCandidateFeatures) { logger.warn(String.format("Candidate features '%s' do not have expected size %d.", candidateFeatures, expectedCandidateFeatures)); } //System.out.printf("Features for candidate '%s': %n", candidates.get(suggestionIndex++).getReplacement()); for (Map.Entry<String, Float> feature : candidateFeatures.entrySet()) { //System.out.printf("%s = %f%n", feature.getKey(), feature.getValue()); data[featureIndex++] = feature.getValue(); } } List<Integer> labels = modelClasses.get(langCode); Booster model = null; try { long modelStartTime = System.currentTimeMillis(); model = modelPool.borrowObject(language); //System.out.printf("Loading model took %d ms.%n", System.currentTimeMillis() - modelStartTime); DMatrix matrix = new DMatrix(data, 1, numFeatures); long predictStartTime = System.currentTimeMillis(); float[][] output = model.predict(matrix); //System.out.printf("Prediction took %d ms.%n", System.currentTimeMillis() - predictStartTime); if (output.length != 1) { throw new XGBoostError(String.format( "XGBoost returned array with first dimension of length %d, expected 1.", output.length)); } float[] probabilities = output[0]; if (probabilities.length != labels.size()) { throw new XGBoostError( String.format("XGBoost returned array with second dimension of length %d, expected %d.", probabilities.length, labels.size())); } // TODO: could react to label -1 (not in list) by e.g. evaluating more candidates //if (labels.get(0) != -1) { // throw new IllegalStateException(String.format( // "Expected first label of ML ranking model to be -1 (= suggestion not in list), was %d", labels.get(0))); //} //float notInListProbabilily = probabilites[0]; for (int candidateIndex = 0; candidateIndex < candidates.size(); candidateIndex++) { int labelIndex = labels.indexOf(candidateIndex); float prob = 0.0f; if (labelIndex != -1) { prob = probabilities[labelIndex]; } candidates.get(candidateIndex).setConfidence(prob); } } catch (XGBoostError xgBoostError) { logger.error("Error while applying XGBoost model to spelling suggestions", xgBoostError); return candidates; } catch (Exception e) { logger.error("Error while loading XGBoost model for spelling suggestions", e); return candidates; } finally { if (model != null) { try { modelPool.returnObject(language, model); } catch (Exception e) { throw new RuntimeException(e); } } } candidates.sort(Collections.reverseOrder(Comparator.comparing(SuggestedReplacement::getConfidence))); return candidates; }
From source file:org.omegat.gui.issues.IssuesPanelController.java
JMenuBar generateMenuBar() {
JMenuBar menuBar = new JMenuBar();
JMenu menu = menuBar.add(new JMenu(OStrings.getString("ISSUES_WINDOW_MENU_OPTIONS")));
{/* w w w.j av a2 s . c om*/
// Tags item is hard-coded because it is not disableable and is implemented differently from all
// others.
JCheckBoxMenuItem tagsItem = new JCheckBoxMenuItem(OStrings.getString(
"ISSUES_WINDOW_MENU_OPTIONS_TOGGLE_PROVIDER", OStrings.getString("ISSUES_TAGS_PROVIDER_NAME")));
tagsItem.setSelected(true);
tagsItem.setEnabled(false);
menu.add(tagsItem);
}
Set<String> disabledProviders = IssueProviders.getDisabledProviderIds();
IssueProviders.getIssueProviders().stream().sorted(Comparator.comparing(IIssueProvider::getId))
.forEach(provider -> {
String label = StringUtil.format(
OStrings.getString("ISSUES_WINDOW_MENU_OPTIONS_TOGGLE_PROVIDER"), provider.getName());
JCheckBoxMenuItem item = new JCheckBoxMenuItem(label);
item.addActionListener(e -> {
IssueProviders.setProviderEnabled(provider.getId(), item.isSelected());
refreshData(selectedEntry, selectedType);
});
item.setSelected(!disabledProviders.contains(provider.getId()));
menu.add(item);
});
menu.addSeparator();
{
JCheckBoxMenuItem askItem = new JCheckBoxMenuItem(OStrings.getString("ISSUES_WINDOW_MENU_DONT_ASK"));
askItem.setSelected(Preferences.isPreference(Preferences.ISSUE_PROVIDERS_DONT_ASK));
askItem.addActionListener(
e -> Preferences.setPreference(Preferences.ISSUE_PROVIDERS_DONT_ASK, askItem.isSelected()));
menu.add(askItem);
}
return menuBar;
}