Example usage for java.util Collection remove

Introduction

In this page you can find the example usage for java.util Collection remove.

Prototype

boolean remove(Object o);

Source Link

Document

Removes a single instance of the specified element from this collection, if it is present (optional operation).

Usage

From source file:ubic.gemma.core.analysis.sequence.SequenceManipulation.java

/**
 * Convert a CompositeSequence's immobilizedCharacteristics into a single sequence, using a simple merge-join
 * strategy./*from w  ww . j a  v a 2  s.  c  o m*/
 *
 * @param sequences sequences
 * @return BioSequence. Not all fields are filled in and must be set by the caller.
 */
public static BioSequence collapse(Collection<Reporter> sequences) {
    Collection<Reporter> copyOfSequences = SequenceManipulation.copyReporters(sequences);
    BioSequence collapsed = BioSequence.Factory.newInstance();
    collapsed.setSequence("");
    if (SequenceManipulation.log.isDebugEnabled())
        SequenceManipulation.log.debug("Collapsing " + sequences.size() + " sequences");
    while (!copyOfSequences.isEmpty()) {
        Reporter next = SequenceManipulation.findLeftMostProbe(copyOfSequences);
        int ol = SequenceManipulation.rightHandOverlap(collapsed, next.getImmobilizedCharacteristic());
        String nextSeqStr = next.getImmobilizedCharacteristic().getSequence();
        collapsed.setSequence(collapsed.getSequence() + nextSeqStr.substring(ol));
        if (SequenceManipulation.log.isDebugEnabled()) {
            SequenceManipulation.log.debug(
                    "New Seq to add: " + nextSeqStr + " Overlap=" + ol + " Result=" + collapsed.getSequence());
        }
        copyOfSequences.remove(next);
    }
    collapsed.setIsCircular(false);
    collapsed.setIsApproximateLength(false);
    collapsed.setLength((long) collapsed.getSequence().length());
    collapsed.setDescription("Collapsed from " + sequences.size() + " reporter sequences");
    return collapsed;
}

From source file:org.kuali.rice.kew.impl.peopleflow.PeopleFlowMaintainableImpl.java

/**
 * In the case of edit maintenance deleted the item on the old side.
 * This method is intended to override the method in MaintainableImpl
 * but has a different set of parameters, so it is not actually an override.
 * This was needed to fetch the old collection from a different path
 * than MaintainableImpl uses. This version has the path (to the newMaintainableObject
 * provided as a parameter, this is used to generate a path to the oldMaintainableObject
 *
 *
 * @see org.kuali.rice.krad.uif.service.impl.ViewHelperServiceImpl#processAfterDeleteLine(View,
 *      org.kuali.rice.krad.uif.container.CollectionGroup, java.lang.Object,  int)
 */// ww  w. ja  v  a2 s.  c  om
@Override
public void processAfterDeleteLine(ViewModel model, String collectionId, String collectionPath, int lineIndex) {

    // Check for maintenance documents in edit
    if (model instanceof MaintenanceDocumentForm && KRADConstants.MAINTENANCE_EDIT_ACTION
            .equals(((MaintenanceDocumentForm) model).getMaintenanceAction())) {

        // get the old object's collection
        String oldCollectionPath = collectionPath.replace("newMaintainableObject", "oldMaintainableObject");
        Collection<Object> oldCollection = ObjectPropertyUtils.getPropertyValue(model, oldCollectionPath);
        try {
            // Remove the object at lineIndex from the collection
            oldCollection.remove(oldCollection.toArray()[lineIndex]);
        } catch (Exception e) {
            throw new RuntimeException("Unable to delete line instance for old maintenance object", e);
        }
    }
}

From source file:forge.game.mana.ManaPool.java

private void removeMana(final Mana mana) {
    Collection<Mana> cm = floatingMana.get(mana.getColor());
    if (cm.remove(mana)) {
        owner.updateManaForView();//from  w w  w . j av  a 2s .  c  o  m
        owner.getGame().fireEvent(new GameEventManaPool(owner, EventValueChangeType.Removed, mana));
    }
}

From source file:com.tera.common.event.DefaultEventContainer.java

@Override
public void fireEvent(String eventType, Event event, Object... args) {
    Collection<EventCallback> callbacks = callbackMap.get(eventType);
    List<EventCallback> finishedCallbacks = new ArrayList<EventCallback>();
    for (EventCallback cb : callbacks) {
        cb.handle(event, args);/*from w  ww. j  a  va2 s. c om*/
        if (cb.isOneRun()) {
            finishedCallbacks.add(cb);
        }
    }
    for (EventCallback finished : finishedCallbacks) {
        callbacks.remove(finished);
    }
}

From source file:org.jactr.io.antlr3.parser.AbstractModelParser.java

synchronized public void removeTreeTracker(ITreeTracker tracker) {
    if (_treeTrackers == null)
        return;/*from w ww  . j  a  v a 2 s .  co  m*/

    for (int type : tracker.getRelevantTypes()) {
        Collection<ITreeTracker> trackers = _treeTrackers.get(type);
        if (trackers != null) {
            trackers.remove(tracker);
            if (trackers.size() == 0)
                _treeTrackers.remove(type);
        }
    }
}

From source file:org.eclipse.smila.connectivity.framework.compound.test.TestCompoundManager.java

/**
 * Test {@link CompoundManager#adaptCompoundRecord(Record, DataSourceConnectionConfig)}.
 * /*from   ww w . ja v  a2 s .c o  m*/
 * @throws Exception
 *           a Exception
 */
public void testAdaptCompoundRecord() throws Exception {
    final CompoundManager compoundManager = getService(CompoundManager.class);
    assertNotNull(compoundManager);

    final DataSourceConnectionConfig config = ConfigurationLoader.unmarshall(
            ConfigUtils.getConfigStream("org.eclipse.smila.connectivity.framework", "ZipConfigExample.xml"));
    assertNotNull(config);

    final Record record = createRecord();
    addAttribute(record, config.getCompoundHandling().getMimeTypeAttribute(), "application/zip");
    record.setAttachment("Content", FileUtils.readFileToByteArray(new File("configuration/data/test.zip")));
    final Record adaptedRecord = compoundManager.adaptCompoundRecord(record, config);

    // with the current implementation the record should not be changed
    assertNotNull(adaptedRecord);
    assertTrue(adaptedRecord == record);
    final Collection<String> atts = record.getMetadata().keySet();
    assertTrue(atts.contains(config.getCompoundHandling().getMimeTypeAttribute()));
    // check if this is the only attribute...
    atts.remove((config.getCompoundHandling().getMimeTypeAttribute()));
    atts.remove(Record.RECORD_ID);
    atts.remove(Record.SOURCE);
    assertTrue(atts.isEmpty());
    final Iterator<String> attaches = record.getAttachmentNames();
    final String attach = attaches.next();
    assertEquals(attach, config.getCompoundHandling().getContentAttachment());
    assertFalse(attaches.hasNext());
}

From source file:info.magnolia.security.app.dialog.action.SaveUserDialogAction.java

private void storeRolesCollection(UserManager userManager, User user, Collection<String> newRoles) {
    Collection<String> oldRoles = new ArrayList<String>();
    for (String role : user.getRoles()) {
        oldRoles.add(role);//  w  w  w .  jav a 2  s  .c  o m
    }
    for (String newRole : newRoles) {
        userManager.addRole(user, newRole);
        oldRoles.remove(newRole);
    }
    for (String oldRole : oldRoles) {
        userManager.removeRole(user, oldRole);
    }
}

From source file:org.springframework.richclient.form.binding.jide.CheckBoxListSelectableBinding.java

/**
 * @param values/*  w  ww .  j a  v  a 2s.c om*/
 * @return
 */
protected int[] determineValueIndexes(Object[] values) {
    int[] indexes = new int[values.length];
    if (values.length == 0)
        return indexes;

    Collection lookupValues = new HashSet(Arrays.asList(values));
    ListModel model = getList().getModel();
    int i = 0;
    for (int index = 0, size = model.getSize(); index < size && !lookupValues.isEmpty(); index++) {
        if (lookupValues.remove(model.getElementAt(index))) {
            indexes[i++] = index;
        }
    }
    int[] result;
    if (i != values.length) {
        result = new int[i];
        System.arraycopy(indexes, 0, result, 0, i);
    } else {
        result = indexes;
    }
    return result;
}

From source file:org.apache.ode.bpel.engine.DebuggerSupport.java

public void removeBreakpoint(Long pid, Breakpoint breakpoint) {
    Breakpoint[] bpArr = _instanceBreakPoints.get(pid);
    if (bpArr != null) {
        Collection<Breakpoint> c = CollectionUtils.makeCollection(ArrayList.class, bpArr);
        c.remove(breakpoint);
        bpArr = c.toArray(new Breakpoint[c.size()]);
        if (bpArr.length == 0) {
            _instanceBreakPoints.remove(pid);
        } else {/*w  w  w . j  a  va  2s  . co  m*/
            _instanceBreakPoints.put(pid, bpArr);
        }
    }
}

From source file:net.ontopia.topicmaps.impl.basic.index.ClassInstanceIndex.java

@Override
public Collection<TopicIF> getAssociationRoleTypes() {
    // Create new collection
    Collection<TopicIF> result = new ArrayList<TopicIF>(roles.keySet());
    result.remove(null);
    return Collections.unmodifiableCollection(result);
}