Example usage for java.util Collection remove

Introduction

In this page you can find the example usage for java.util Collection remove.

Prototype

boolean remove(Object o);

Source Link

Document

Removes a single instance of the specified element from this collection, if it is present (optional operation).

Usage

From source file:org.xwiki.watchlist.internal.DefaultWatchListStore.java

@Override
public boolean removeWatchedElement(String user, String watchedElement, WatchedElementType type)
        throws XWikiException {
    XWikiContext context = contextProvider.get();
    String elementToRemove = watchedElement;

    if (!WatchedElementType.WIKI.equals(type) && !watchedElement.contains(WIKI_SPACE_SEP)) {
        elementToRemove = context.getWikiId() + WIKI_SPACE_SEP + watchedElement;
    }/*from www.  j  a v  a2s  . c  o  m*/

    if (!this.isWatched(elementToRemove, user, type)) {
        return false;
    }

    Collection<String> watchedElements = getWatchedElements(user, type);
    watchedElements.remove(elementToRemove);

    this.setWatchListElementsProperty(user, type, watchedElements);
    return true;
}

From source file:ubic.gemma.analysis.sequence.SequenceManipulation.java

/**
 * Convert a CompositeSequence's immobilizedCharacteristics into a single sequence, using a simple merge-join
 * strategy.// w  w w . j  a v  a 2  s. c  o  m
 * 
 * @param sequences
 * @return BioSequence. Not all fields are filled in and must be set by the caller.
 */
public static BioSequence collapse(Collection<Reporter> sequences) {
    Collection<Reporter> copyOfSequences = copyReporters(sequences);
    BioSequence collapsed = BioSequence.Factory.newInstance();
    collapsed.setSequence("");
    if (log.isDebugEnabled())
        log.debug("Collapsing " + sequences.size() + " sequences");
    while (!copyOfSequences.isEmpty()) {
        Reporter next = findLeftMostProbe(copyOfSequences);
        int ol = SequenceManipulation.rightHandOverlap(collapsed, next.getImmobilizedCharacteristic());
        String nextSeqStr = next.getImmobilizedCharacteristic().getSequence();
        collapsed.setSequence(collapsed.getSequence() + nextSeqStr.substring(ol));
        if (log.isDebugEnabled()) {
            log.debug(
                    "New Seq to add: " + nextSeqStr + " Overlap=" + ol + " Result=" + collapsed.getSequence());
        }
        copyOfSequences.remove(next);
    }
    collapsed.setIsCircular(false);
    collapsed.setIsApproximateLength(false);
    collapsed.setLength(new Long(collapsed.getSequence().length()));
    collapsed.setDescription("Collapsed from " + sequences.size() + " reporter sequences");
    return collapsed;
}

From source file:org.fracturedatlas.athena.apa.BaseApaAdapterTest.java

/**
 * Compares two lists for equality ignoring order.
 * @param col1//from w ww  .  j a v a  2  s. c  o  m
 * @param col2
 */
public void doCollectionsContainSameElements(Collection col1, Collection col2) {

    if (col1 == null) {
        assertNull(col2);
    } else if (col2 == null) {
        fail("One list is null and the other is not");
    }

    assertEquals(col1.size(), col2.size());

    for (Object o : col2) {
        col1.remove(o);
    }

    assertEquals(0, col1.size());
}

From source file:org.jboss.tools.openshift.internal.ui.models.ObservableResourceCache.java

private void flushCacheBuildConfigByOutput(IBuildConfig config) {
    String imageRef = imageRef(config);
    if (imageRefToBuildConfigs.containsKey(imageRef)) {
        synchronized (imageRefToBuildConfigs) {
            Collection<IBuildConfig> configs = imageRefToBuildConfigs.get(imageRef);
            if (configs != null) {
                configs.remove(config);
                if (configs.isEmpty()) {
                    imageRefToBuildConfigs.remove(imageRef);
                }/*from  w w w  . j a  v a2s  .  co  m*/
            }
        }
    }

}

From source file:org.codehaus.mojo.license.api.DefaultThirdPartyHelper.java

/**
 * {@inheritDoc}/*from   w  ww .ja  va  2  s. c o m*/
 */
@SuppressWarnings("unchecked") // project.getArtifacts()
public SortedProperties createUnsafeMapping(LicenseMap licenseMap, File missingFile,
        boolean useRepositoryMissingFiles, SortedSet<MavenProject> unsafeDependencies,
        SortedMap<String, MavenProject> projectDependencies)
        throws ProjectBuildingException, IOException, ThirdPartyToolException {

    SortedProperties unsafeMappings = loadUnsafeMapping(licenseMap, missingFile, projectDependencies);

    if (CollectionUtils.isNotEmpty(unsafeDependencies)) {

        // there is some unresolved license

        if (useRepositoryMissingFiles) {

            // try to load missing third party files from dependencies

            Collection<MavenProject> projects = new ArrayList<MavenProject>(projectDependencies.values());
            projects.remove(project);
            projects.removeAll(unsafeDependencies);

            SortedProperties resolvedUnsafeMapping = loadThirdPartyDescriptorForUnsafeMapping(
                    project.getArtifacts(), unsafeDependencies, projects, licenseMap);

            // push back resolved unsafe mappings
            unsafeMappings.putAll(resolvedUnsafeMapping);
        }
    }

    return unsafeMappings;
}

From source file:org.codehaus.griffon.plugins.DefaultGriffonPlugin.java

private void addExcludeRuleInternal(Map map, Object o) {
    Collection excludes = (Collection) map.get(EXCLUDES);
    if (excludes == null) {
        excludes = new ArrayList();
        map.put(EXCLUDES, excludes);//from   w ww . j  a v  a2  s  .co m
    }
    Collection includes = (Collection) map.get(INCLUDES);
    if (includes != null)
        includes.remove(o);
    excludes.add(o);
}

From source file:org.jboss.tools.openshift.internal.ui.models.ObservableResourceCache.java

private void flushCacheDeploymentConfigByImageChangeTrigger(IDeploymentConfig dc) {
    Collection<IDeploymentTrigger> triggers = dc.getTriggers().stream()
            .filter(t -> DeploymentTriggerType.IMAGE_CHANGE.equals(t.getType())).collect(Collectors.toList());
    for (IDeploymentTrigger trigger : triggers) {
        String imageRef = imageRef((IDeploymentImageChangeTrigger) trigger);
        synchronized (imageRefToDeployConfigs) {
            if (imageRefToDeployConfigs.containsKey(imageRef)) {
                Collection<IDeploymentConfig> configs = imageRefToDeployConfigs.get(imageRef);
                if (configs != null) {
                    configs.remove(dc);
                    if (configs.isEmpty()) {
                        imageRefToDeployConfigs.remove(imageRef);
                    }/*from w  w  w .  j  a  v a  2s .  com*/
                }
            }
        }
    }
}

From source file:ubc.pavlab.aspiredb.server.util.PhenotypeUtil.java

/**
 * Builds a list of RestrictionExpressions by comparing the HumanPhenotypeOntology against the Phenotypes in the
 * database and assign Phenotype values as appropriate.
 * // www .  j  a v a  2  s .  c  om
 * @param phenotype
 * @param activeProjectIds
 * @return
 */
private Collection<RestrictionExpression> expandPhenotypeRestriction(PhenotypeRestriction phenotype,
        Collection<Long> activeProjectIds) {

    HumanPhenotypeOntologyService humanPhenotypeOntology = os.getHumanPhenotypeOntologyService();
    Set<RestrictionExpression> expandedRestrictions = new HashSet<RestrictionExpression>();
    expandedRestrictions.add(phenotype);

    if (!humanPhenotypeOntology.isOntologyLoaded()) {
        loadOntology();
    }

    resolveUri(phenotype);

    if (!phenotype.isOntologyTerm()) {
        log.warn("\"" + phenotype.getName() + "\" is not an ontology term");
        return expandedRestrictions;
    }

    OntologyTerm term = humanPhenotypeOntology.getTerm(HUMAN_PHENOTYPE_URI_PREFIX + phenotype.getUri());
    if (term == null) {
        log.error(HUMAN_PHENOTYPE_URI_PREFIX + phenotype.getUri() + " not found in Ontology");
        return expandedRestrictions;
    }

    Collection<String> existingTerms = phenotypeDao.getExistingNames(activeProjectIds);
    existingTerms.remove(phenotype.getName());

    if (phenotype.isAbsent()) {
        expandedRestrictions.remove(phenotype);

        // conjunction: make sure all the child are Absent
        Conjunction conj = new Conjunction();
        Conjunction conjDescendants = new Conjunction();
        Set<PhenotypeRestriction> descendantRestrictions = new HashSet<PhenotypeRestriction>();
        createRestrictionsForDescendants(VALUE_ABSENT, term, descendantRestrictions, existingTerms);

        /*
         * log.debug( "descendant (" + descendantRestrictions.size() + "): " ); for ( PhenotypeRestriction r :
         * descendantRestrictions ) { log.debug( "; " + r.getName() + "=" + r.getValue() ); } log.debug( "" );
         */

        conjDescendants.addAll(descendantRestrictions);
        conj.add(phenotype);
        conj.add(conjDescendants);
        expandedRestrictions.add(conj);

    } else if (phenotype.isPresent()) {
        expandedRestrictions.remove(phenotype);

        // disjunction: count if at least one child penotype is Present
        Disjunction disj = new Disjunction();
        Set<PhenotypeRestriction> descendantRestrictions = new HashSet<PhenotypeRestriction>();
        createRestrictionsForDescendants(VALUE_PRESENT, term, descendantRestrictions, existingTerms);
        descendantRestrictions.add(phenotype);
        disj.addAll(descendantRestrictions);
        expandedRestrictions.add(disj);
    }

    return expandedRestrictions;
}

From source file:de.hybris.platform.b2bacceleratorservices.company.impl.DefaultB2BCommerceUnitService.java

@Override
public void removeAddressEntry(final String unitUid, final String addressId) {
    final B2BUnitModel unit = this.getUnitForUid(unitUid);
    validateParameterNotNullStandardMessage("B2BUnit", unit);
    final Collection<AddressModel> addresses = new ArrayList<AddressModel>(unit.getAddresses());
    for (final AddressModel addressModel : addresses) {
        if (addressModel.getPk().getLongValueAsString().equals(addressId)) {
            addresses.remove(addressModel);
            unit.setAddresses(addresses);
            getModelService().remove(addressModel);
            break;
        }// ww  w .j  a  v a  2  s.  c  o m
    }
}

From source file:com.create.security.oauth2.provider.token.SpringCacheTokenStoreImpl.java

@Override
public void removeAccessToken(final String tokenValue) {
    final OAuth2AccessToken removed = tokenRepository.removeAccessToken(tokenValue);
    tokenRepository.removeAccessTokenToRefreshToken(tokenValue);
    final OAuth2Authentication authentication = tokenRepository.removeAuthentication(tokenValue);
    if (authentication != null) {
        tokenRepository.removeAuthenticationToAccessToken(authentication);
        Collection<OAuth2AccessToken> tokens;
        String clientId = authentication.getOAuth2Request().getClientId();
        tokens = tokenRepository.findTokensByClientIdAndUserName(clientId, authentication.getName());
        if (tokens != null) {
            tokens.remove(removed);
        }/*  www  .  j a v  a2 s  . co  m*/
        tokens = tokenRepository.findTokensByClientId(clientId);
        if (tokens != null) {
            tokens.remove(removed);
        }
        tokenRepository.removeAuthenticationToAccessToken(authentication);
    }
}