Example usage for java.util ArrayList addAll

List of usage examples for java.util ArrayList addAll

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Introduction

In this page you can find the example usage for java.util ArrayList addAll.

Prototype

public boolean addAll(Collection<? extends E> c)

Source Link

Document

Appends all of the elements in the specified collection to the end of this list, in the order that they are returned by the specified collection's Iterator.

Usage

From source file:io.lightlink.utils.ClasspathScanUtils.java

public static ArrayList<String> getAllResources(String packageName, ServletContext servletContext)
        throws IOException {
    ArrayList<String> res = new ArrayList<String>();
    res.addAll(getResourcesFromPackage(packageName));
    res.addAll(getResourcesFromWebInf(packageName, servletContext));
    return res;//from  ww  w . jav a2s  .c o  m
}

From source file:com.justgiving.raven.kissmetrics.utils.KissmetricsLocalSchemaExtractor.java

/***
 * This function sorts the HashMap values by key and returns the key/value pairs as a string
 * @param hashMap the input hashMap/* w  ww .j  av a  2s. c om*/
 * @return the return string of the sorted key/value pairs
 */
private static String sortOutputByKey(KeyValueCounter outputKetValueCounter) {

    Set<String> set = outputKetValueCounter.keyCounter.keySet();
    ArrayList<String> list = new ArrayList<String>();
    list.addAll(set);
    Collections.sort(list);
    StringBuilder sb = new StringBuilder();

    for (String key : list) {
        sb.append(key).append("\t").append(outputKetValueCounter.keyCounter.get(key)).append("\t")
                .append(outputKetValueCounter.valueLength.get(key)).append("\n");
    }
    return sb.toString();
}

From source file:Main.java

public static void uniqe(ArrayList<Integer> items) {
    // add elements to al, including duplicates
    HashSet<Integer> hs = new HashSet<Integer>();
    hs.addAll(items);/* w  w  w.j  a v  a  2s. com*/
    items.clear();
    items.addAll(hs);
}

From source file:ccm.pay2spawn.configurator.HTMLGenerator.java

public static void generate() throws IOException {
    ArrayList<Reward> sortedRewards = new ArrayList<>();
    sortedRewards.addAll(Pay2Spawn.getRewardsDB().getRewards());
    Collections.sort(sortedRewards, new Comparator<Reward>() {
        @Override// www.  java  2  s  .  co m
        public int compare(Reward o1, Reward o2) {
            return (int) (o1.getAmount() - o2.getAmount());
        }
    });

    File output = new File(htmlFolder, "index.html");
    String text = readFile(templateIndex);
    int begin = text.indexOf(LOOP_START);
    int end = text.indexOf(LOOP_END);

    FileUtils.writeStringToFile(output, replace(text.substring(0, begin)), false);

    String loop = text.substring(begin + LOOP_START.length(), end);
    for (Reward reward : sortedRewards) {
        Pay2Spawn.getLogger().info("Adding " + reward + " to html file.");
        FileUtils.writeStringToFile(output, replace(loop, reward), true);
    }

    FileUtils.writeStringToFile(output, text.substring(end + LOOP_END.length(), text.length()), true);
}

From source file:Main.java

public static List<File> getListFiles(File parentDir) {
    ArrayList<File> inFiles = new ArrayList<File>();
    File[] files = parentDir.listFiles();
    for (File file : files) {
        if (file.isDirectory()) {
            inFiles.addAll(getListFiles(file));
        } else {/*from   w w  w  .  j a  v a2s  . c  o m*/
            inFiles.add(file);
        }
    }
    return inFiles;
}

From source file:com.bah.applefox.main.plugins.pageranking.utilities.PRtoFile.java

private static HashMap<String, Double> createMap(String[] args)
        throws AccumuloException, AccumuloSecurityException, TableNotFoundException {
    HashMap<String, Double> ret = new HashMap<String, Double>();
    String readTable = args[13] + "Old";

    Scanner scan = AccumuloUtils.connectRead(readTable);

    Iterator<Entry<Key, Value>> itr = scan.iterator();

    while (itr.hasNext()) {
        Entry<Key, Value> temp = itr.next();
        try {/*w  ww  .  ja  v  a 2s  . c  o  m*/
            Double val = (Double) IngestUtils.deserialize(temp.getValue().get());
            ret.put(temp.getKey().getRow().toString(), val);
            System.out.println("Adding to Map: " + temp.getKey().getRow().toString() + " with rank: " + val);
        } catch (IOException e) {
            if (e.getMessage() != null) {
                log.error(e.getMessage());
            } else {
                log.error(e.getStackTrace());
            }
        } catch (ClassNotFoundException e) {
            if (e.getMessage() != null) {
                log.error(e.getMessage());
            } else {
                log.error(e.getStackTrace());
            }
        }
    }

    Double max = 0.0;

    Collection<Double> values = ret.values();

    ArrayList<Double> tempValues = new ArrayList<Double>();
    tempValues.addAll(values);
    Collections.sort(tempValues);
    Collections.reverse(tempValues);

    max = tempValues.get(0);

    ret.put("[[MAX_PR]]", max);

    return ret;
}

From source file:Main.java

public final static <T> void add(ArrayList<T> origin, ArrayList<T> list) {
    if (origin == null) {
        throw new IllegalArgumentException("");
    }//from  ww  w  . ja  v a2 s.c  o  m

    if (list == null || list.size() == 0) {
        return;
    }

    origin.addAll(list);
}

From source file:Main.java

public static <ValueType> ArrayList<ValueType> getArrayList(Hashtable<?, ValueType> hashTable) {

    // /////////////////////////////////////////
    // Declarations:
    // /////////////////////////////////////////

    ArrayList<ValueType> newList = null;

    // /////////////////////////////////////////
    // Code:/*from  w w w.j  av  a 2  s  . com*/
    // /////////////////////////////////////////

    newList = new ArrayList<ValueType>(hashTable.size());
    newList.addAll(hashTable.values());

    return newList;

}

From source file:it.iit.genomics.cru.simsearch.bundle.utils.PantherBridge.java

public static Collection<String[]> getEnrichment(String organism, String fileName, double threshold) {
    ArrayList<String[]> results = new ArrayList<>();

    ArrayListMultimap<String, String> genes = ArrayListMultimap.create();
    ArrayListMultimap<Double, String> pvalues = ArrayListMultimap.create();

    HashSet<String> uniqueGenes = new HashSet<>();

    try {//from   www. j a  v  a  2  s. co  m
        String[] enrichmentTypes = { "process", "pathway" };

        for (String enrichmentType : enrichmentTypes) {

            HttpClient client = new HttpClient();
            MultipartPostMethod method = new MultipartPostMethod(
                    "http://pantherdb.org/webservices/garuda/tools/enrichment/VER_2/enrichment.jsp?");

            // Define name-value pairs to set into the QueryString
            method.addParameter("organism", organism);
            method.addParameter("type", "enrichment");
            method.addParameter("enrichmentType", enrichmentType); // "function",
            // "process",
            // "cellular_location",
            // "protein_class",
            // "pathway"
            File inputFile = new File(fileName);
            method.addPart(new FilePart("geneList", inputFile, "text/plain", "ISO-8859-1"));

            // PANTHER does not use the ID type
            // method.addParameter("IdType", "UniProt");

            // Execute and print response
            client.executeMethod(method);
            String response = method.getResponseBodyAsString();

            for (String line : response.split("\n")) {
                if (false == "".equals(line.trim())) {

                    String[] row = line.split("\t");
                    // Id Name GeneId P-value
                    if ("Id".equals(row[0])) {
                        // header
                        continue;
                    }
                    // if (row.length > 1) {
                    String name = row[1];

                    String gene = row[2];
                    Double pvalue = Double.valueOf(row[3]);

                    uniqueGenes.add(gene);

                    if (pvalue < threshold) {
                        if (false == genes.containsKey(name)) {
                            pvalues.put(pvalue, name);
                        }
                        genes.put(name, gene);
                    }
                    // } else {
                    //    System.out.println("oups: " + row[0]);
                    // }
                }
            }

            method.releaseConnection();
        }
        ArrayList<Double> pvalueList = new ArrayList<>();
        Collections.sort(pvalueList);

        pvalueList.addAll(pvalues.keySet());
        Collections.sort(pvalueList);

        int numGenes = uniqueGenes.size();

        for (Double pvalue : pvalueList) {
            for (String name : pvalues.get(pvalue)) {
                String geneList = String.join(",", genes.get(name));
                String result[] = { name, "" + pvalue, genes.get(name).size() + "/" + numGenes, geneList };
                results.add(result);
            }
        }

    } catch (IOException e) {
        e.printStackTrace();
    }

    return results;
}

From source file:edu.lafayette.metadb.model.dataman.DataExporter.java

/**
 * Export a project's attributes./*from w w  w  . j  a  v  a  2s.  com*/
 * @param projectName The project name.
 * @param delimiter The delimiter to use. 
 * @param encoder The character encoding to use.
 * @param technical A flag indicating whether to include technical attributes.
 * @return A String[] representing headers for the export file.
 */
public static String[] exportAttributes(String projectName, char delimiter, String encoder, boolean technical) {
    ArrayList attrList = null;
    attrList = AdminDescAttributesDAO.getAdminDescAttributes(projectName, Global.MD_TYPE_DESC);
    attrList.addAll(AdminDescAttributesDAO.getAdminDescAttributes(projectName, Global.MD_TYPE_ADMIN));
    if (technical)
        attrList.addAll(TechAttributesDAO.getTechAttributes(projectName));

    String[] out = new String[attrList.size()];
    for (int i = 0; i < out.length; i++)
        try {
            String label = ((Attribute) attrList.get(i)).getLabel();
            out[i] = StringUtils.trimToEmpty(new String(
                    (((Attribute) attrList.get(i)).getElement() + (label.equals("") ? "" : "." + label))
                            .getBytes("UTF-8"),
                    encoder).replace('\t', ' '));
        } catch (UnsupportedEncodingException e) {
            MetaDbHelper.logEvent(e);
            out[i] = ((Attribute) attrList.get(i)).getElement() + "."
                    + ((Attribute) attrList.get(i)).getLabel();
        }
    return out;
}