Example usage for java.util ArrayList addAll

List of usage examples for java.util ArrayList addAll

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Introduction

In this page you can find the example usage for java.util ArrayList addAll.

Prototype

public boolean addAll(Collection<? extends E> c)

Source Link

Document

Appends all of the elements in the specified collection to the end of this list, in the order that they are returned by the specified collection's Iterator.

Usage

From source file:com.thoughtworks.go.server.GoServer.java

private String getExtraJarsToBeAddedToClasspath() {
    ArrayList<File> extraClassPathFiles = new ArrayList<>();
    extraClassPathFiles.addAll(getAddonJarFiles());
    String extraClasspath = convertToClasspath(extraClassPathFiles);
    LOG.info("Including addons: {}", extraClasspath);
    return extraClasspath;
}

From source file:hrpod.tools.nlp.StopWordRemoval.java

public ArrayList<String> removeStopWords(String[] words) {

    String newText = null;/* www  .j  a v a  2 s .c o m*/

    ArrayList<String> wordList = new ArrayList();
    wordList.addAll(Arrays.asList(words));
    //find stop/common words and remove them
    for (int w = 0; w < wordList.size(); w++) {
        String word = wordList.get(w);
        //break phrases down into individaul words
        ArrayList<String> subWordList = new ArrayList();
        subWordList.addAll(Arrays.asList(wordList.get(w).split(" ")));
        //remove the stop words
        for (int swl = 0; swl < subWordList.size(); swl++) {
            for (int sw = 0; sw < stopWords.length; sw++) {
                String stopWord = stopWords[sw];
                if (stopWords[sw].toLowerCase().contains(subWordList.get(swl).toLowerCase())) {
                    //logger.info("REMOVE WORD: " + stopWords[sw]);
                    subWordList.remove(swl);
                    swl--;
                    break;
                }
            }
        }
        wordList.set(w, StringUtils.join(subWordList, " "));
        if (wordList.get(w).trim().equals("")) {
            wordList.remove(w);
            w--;
        }
    }

    //newText = StringUtils.join(wordList, " ");
    return wordList;
}

From source file:it.iit.genomics.cru.structures.bridges.bridges.UniprotkbUtilsTest.java

public void testVarSplice() throws BridgesRemoteAccessException {
    String uniprotAc = "O14746";

    String[] uniprotAcs = { uniprotAc };

    ArrayList<String> uniprotAcsCollection = new ArrayList<>();
    uniprotAcsCollection.addAll(Arrays.asList(uniprotAcs));

    HashMap<String, MoleculeEntry> entries = UniprotkbUtils.getInstance("9606")
            .getUniprotEntriesFromUniprotAccessions(uniprotAcsCollection);
    System.out.println(entries.get(uniprotAc).getVarSpliceAC("NM_198253"));
    //System.out.println(entries.get(uniprotAc).getVarSpliceAC("NM_001145339.2")); 

    HashSet<String> geneIds = new HashSet<>();
    geneIds.addAll(entries.get(uniprotAc).getGeneNames());
    geneIds.addAll(entries.get(uniprotAc).getRefseqs());
    geneIds.addAll(entries.get(uniprotAc).getEnsemblGenes());
    System.out.println("GeneIds: " + StringUtils.join(geneIds, ", "));

    System.out.println(entries.get(uniprotAc).getVarSpliceAC("NM_198253"));
    System.out.println(entries.get(uniprotAc).getSequence("NM_198253"));

    Assert.assertEquals(uniprotAc, entries.get(uniprotAc).getVarSpliceAC("NM_198253"));
    Assert.assertEquals(uniprotAc, entries.get(uniprotAc).getSequence("NM_198253").getSequence());

}

From source file:com.microsoft.tfs.core.httpclient.params.DefaultHttpParamsFactory.java

protected HttpParams createParams() {
    final HttpClientParams params = new HttpClientParams(null);

    params.setParameter(HttpMethodParams.USER_AGENT, "Jakarta Commons-HttpClient/3.1");
    params.setVersion(HttpVersion.HTTP_1_1);
    params.setConnectionManagerClass(SimpleHttpConnectionManager.class);
    params.setCookiePolicy(CookiePolicy.DEFAULT);
    params.setHttpElementCharset("US-ASCII");
    params.setContentCharset("ISO-8859-1");
    params.setParameter(HttpMethodParams.RETRY_HANDLER, new DefaultHttpMethodRetryHandler());

    final ArrayList datePatterns = new ArrayList();
    datePatterns.addAll(Arrays.asList(new String[] { DateUtil.PATTERN_RFC1123, DateUtil.PATTERN_RFC1036,
            DateUtil.PATTERN_ASCTIME, "EEE, dd-MMM-yyyy HH:mm:ss z", "EEE, dd-MMM-yyyy HH-mm-ss z",
            "EEE, dd MMM yy HH:mm:ss z", "EEE dd-MMM-yyyy HH:mm:ss z", "EEE dd MMM yyyy HH:mm:ss z",
            "EEE dd-MMM-yyyy HH-mm-ss z", "EEE dd-MMM-yy HH:mm:ss z", "EEE dd MMM yy HH:mm:ss z",
            "EEE,dd-MMM-yy HH:mm:ss z", "EEE,dd-MMM-yyyy HH:mm:ss z", "EEE, dd-MM-yyyy HH:mm:ss z", }));
    params.setParameter(HttpMethodParams.DATE_PATTERNS, datePatterns);

    // TODO: To be removed. Provided for backward compatibility
    String agent = null;/*from   www  . j  a  v  a2 s.  c o  m*/
    try {
        agent = System.getProperty("httpclient.useragent");
    } catch (final SecurityException ignore) {
    }
    if (agent != null) {
        params.setParameter(HttpMethodParams.USER_AGENT, agent);
    }

    // TODO: To be removed. Provided for backward compatibility
    String defaultCookiePolicy = null;
    try {
        defaultCookiePolicy = System.getProperty("apache.commons.httpclient.cookiespec");
    } catch (final SecurityException ignore) {
    }
    if (defaultCookiePolicy != null) {
        if ("COMPATIBILITY".equalsIgnoreCase(defaultCookiePolicy)) {
            params.setCookiePolicy(CookiePolicy.BROWSER_COMPATIBILITY);
        } else if ("NETSCAPE_DRAFT".equalsIgnoreCase(defaultCookiePolicy)) {
            params.setCookiePolicy(CookiePolicy.NETSCAPE);
        } else if ("RFC2109".equalsIgnoreCase(defaultCookiePolicy)) {
            params.setCookiePolicy(CookiePolicy.RFC_2109);
        }
    }

    return params;
}

From source file:com.glluch.profilesparser.ICTProfile.java

/**
 * Get the terms asociated with a profile without its counts.
 * @return the asociated terms./*from  ww w.  ja  v a  2 s.c  o m*/
 */
public ArrayList<String> onlyTerms() {
    ArrayList<String> res = new ArrayList<>();
    res.addAll(pterms.keySet());
    return res;
}

From source file:io.gatling.mojo.Fork.java

private List<String> buildCommand() throws IOException {
    ArrayList<String> command = new ArrayList<String>(jvmArgs.size() + 2);
    command.addAll(jvmArgs);
    command.add(mainClassName);//ww  w . j av a2s  . c om
    command.add(createArgFile(args).getCanonicalPath());
    return command;
}

From source file:net.landora.video.programs.ProgramsAddon.java

public boolean isAvaliable(Program program) {
    String path = getConfiguredPath(program);
    if (path == null) {
        return false;
    }//from w  w  w .j  a  va 2s.c om

    ArrayList<String> command = new ArrayList<String>();
    command.add(path);
    command.addAll(program.getTestArguments());
    ProcessBuilder builder = new ProcessBuilder(command);
    builder.redirectErrorStream(true);

    try {
        Process p = builder.start();
        IOUtils.copy(p.getInputStream(), new NullOutputStream());
        p.waitFor();
        return true;
    } catch (Exception e) {
        log.info("Error checking for program: " + program, e);
        return false;
    }
}

From source file:org.apache.activemq.apollo.dto.ApolloTypeIdResolver.java

public void init(JavaType baseType) {
    this.baseType = baseType;
    ArrayList<Class<?>> classes = new ArrayList<Class<?>>();
    classes.add(baseType.getRawClass());
    classes.addAll(Arrays.asList(DtoModules.extensionClasses()));
    for (Class<?> c : classes) {
        if (baseType.getRawClass().isAssignableFrom(c)) {
            JsonTypeName jsonAnnoation = c.getAnnotation(JsonTypeName.class);
            if (jsonAnnoation != null && jsonAnnoation.value() != null) {
                typeToId.put(c, jsonAnnoation.value());
                idToType.put(jsonAnnoation.value(),
                        TypeFactory.defaultInstance().constructSpecializedType(baseType, c));
                idToType.put(c.getName(), TypeFactory.defaultInstance().constructSpecializedType(baseType, c));
            } else {
                XmlRootElement xmlAnnoation = c.getAnnotation(XmlRootElement.class);
                if (xmlAnnoation != null && xmlAnnoation.name() != null) {
                    typeToId.put(c, xmlAnnoation.name());
                    idToType.put(xmlAnnoation.name(),
                            TypeFactory.defaultInstance().constructSpecializedType(baseType, c));
                    idToType.put(c.getName(),
                            TypeFactory.defaultInstance().constructSpecializedType(baseType, c));
                }//from  w  ww  . j a  va  2  s  .co m
            }
        }
    }
}

From source file:br.unicamp.cst.motivational.MotivationalMonitor.java

@Override
public synchronized void run() {

    DefaultCategoryDataset dataset = new DefaultCategoryDataset();

    final JFreeChart chart = ChartFactory.createBarChart(getTitle(), getEntity(), "Value", dataset,
            PlotOrientation.VERTICAL, true, true, false);

    final CategoryPlot plot = chart.getCategoryPlot();
    plot.setBackgroundPaint(Color.lightGray);
    plot.setDomainGridlinePaint(Color.white);
    plot.setRangeGridlinePaint(Color.white);
    chart.setBackgroundPaint(Color.lightGray);

    ChartFrame frame = new ChartFrame(getTitle(), chart);
    frame.pack();/*from   ww w . j  a v a2 s. co m*/
    frame.setVisible(true);

    while (true) {
        ArrayList<Codelet> tempCodeletsList = new ArrayList<Codelet>();
        tempCodeletsList.addAll(this.getListOfMotivationalEntities());

        synchronized (tempCodeletsList) {

            for (Codelet co : tempCodeletsList) {
                dataset.addValue(co.getActivation(), co.getName(), "activation");
            }
            try {
                Thread.currentThread().sleep(getRefreshPeriod());
            } catch (InterruptedException e) {
                e.printStackTrace();
            }

        }
    }
}

From source file:io.pivio.dependencies.DependenciesReaderTest.java

@Test
public void testReadLicensesCombined() throws Exception {
    ArrayList<Dependency> resultFe = new ArrayList<>();
    resultFe.add(new Dependency("fe_dependency", "testurl", new ArrayList()));
    ArrayList<Dependency> resultBe = new ArrayList<>();
    resultBe.add(new Dependency("be_dependency_1", "testurl", new ArrayList()));
    resultBe.add(new Dependency("be_dependency_2", "testurl", new ArrayList()));
    dependenciesReader.configuration/*from w  ww  .java  2s . co  m*/
            .setParameter(generateCommandLineWithMultipleSourcesAndRelativeSourceCodeSwitch());
    when(mockedBuildTool.getDependencyReader(new File("/tmp/frontend/src"))).thenReturn(mockedDependencyReader);
    when(mockedDependencyReader.readDependencies("/tmp/frontend/src")).thenReturn(resultFe);
    when(mockedBuildTool.getDependencyReader(new File("/tmp/backend/src"))).thenReturn(mockedDependencyReader);
    when(mockedDependencyReader.readDependencies("/tmp/backend/src")).thenReturn(resultBe);

    List<Dependency> dependencies = dependenciesReader.getDependencies();

    ArrayList<Dependency> expectedResult = new ArrayList<>();
    expectedResult.addAll(resultFe);
    expectedResult.addAll(resultBe);

    verify(mockedDependencyReader, times(2)).readDependencies(anyString());
    assertThat(dependencies).isEqualTo(expectedResult);
}