Example usage for java.lang Long parseLong

List of usage examples for java.lang Long parseLong

Introduction

In this page you can find the example usage for java.lang Long parseLong.

Prototype

public static long parseLong(String s) throws NumberFormatException 

Source Link

Document

Parses the string argument as a signed decimal long .

Usage

From source file:edu.duke.igsp.gkde.Main.java

public static void main(String[] argv) throws Exception {

    Options opts = new Options();
    opts.addOption("s", true, "wiggle track step (default=1)");
    opts.addOption("l", true, "feature length (default=600)");
    opts.addOption("f", true, "fragment size (default=estimated from data)");
    //    opts.addOption("b", true, "bandwidth (default=200)");
    //    opts.addOption("w", true, "window (default=3800");
    opts.addOption("wg", true, "wg threshold set (defualt = calculated)");
    opts.addOption("c", true, "genomic total read weight (defualt = calculated)");
    opts.addOption("h", false, "print usage");
    opts.addOption(OptionBuilder.withArgName("input dir").hasArg()
            .withDescription("input directory (default=current directory)").isRequired(false).create("d"));
    opts.addOption(OptionBuilder.withArgName("output dir").hasArg()
            .withDescription("output directory (default=current directory)").isRequired(false).create("o"));
    opts.addOption(OptionBuilder.withArgName("background dir").hasArg()
            .withDescription("background directory (default=none)").isRequired(false).create("b"));
    opts.addOption(OptionBuilder.withArgName("ploidy dir").hasArg()
            .withDescription("ploidy/input directory (default=none)").isRequired(false).create("p"));
    opts.addOption(OptionBuilder.withArgName("wig | bed | npf").hasArg()
            .withDescription("output format (default wig)").isRequired(false).create("of"));
    opts.addOption(OptionBuilder.withArgName("dnase | chip | faire | atac").hasArg()
            .withDescription("input data").isRequired(true).create("in"));
    opts.addOption(OptionBuilder.withArgName("weight clip").hasArg()
            .withDescription("weight clip value (default none)").isRequired(false).create("wc"));
    opts.addOption("t", true, "threshold (standard deviations) (default=4.0)");
    //    opts.addOption("r", true, "background ratio (default=2.0)");
    opts.addOption("v", false, "verbose output");

    CommandLineParser parser = new GnuParser();
    int fragment_size = -1;
    int fragment_offset = 0;
    long featureLength = 600l;
    //    float thresh = 2;
    float threshold = KDEChromosome.Settings.DEFAULT_THRESHOLD;
    int step = 1;
    boolean showHelp = false;
    boolean verbose = false;
    String inputDirectory = null;
    String backgroundDirectory = null;
    String ploidyDirectory = null;
    String[] files = null;//from   ww  w.j a  v  a 2s  .c  o m
    String[] bgfiles = {};
    String[] ipfiles = {};
    String outputFormat = "wig";
    String inputDataType = "dnase";
    File outputDirectory = new File(System.getProperty("user.dir"));

    long bandwidth = 0l;
    long window = 0l;
    double ncuts = 0.0d;
    float temp_threshold = 0f;
    int weight_clip = 0;

    System.out.println("F-Seq Version 1.85");

    try {
        CommandLine cmd = parser.parse(opts, argv);
        showHelp = (cmd.hasOption("h"));
        verbose = (cmd.hasOption("v"));
        if (cmd.hasOption("s"))
            step = Integer.parseInt(cmd.getOptionValue("s"));
        if (cmd.hasOption("f"))
            fragment_size = Integer.parseInt(cmd.getOptionValue("f"));
        if (cmd.hasOption("d")) //input directory
            inputDirectory = cmd.getOptionValue("d");
        if (cmd.hasOption("b")) //background directory
            backgroundDirectory = cmd.getOptionValue("b");
        if (cmd.hasOption("p")) //ploidy|input directory
            ploidyDirectory = cmd.getOptionValue("p");
        if (cmd.hasOption("l")) // bandwidth
            featureLength = Long.parseLong(cmd.getOptionValue("l"));
        if (cmd.hasOption("of")) { // output format
            outputFormat = cmd.getOptionValue("of");
            if (!outputFormat.equals("wig") && !outputFormat.equals("bed") && !outputFormat.equals("npf")) {
                System.out.println("Parameter error: output format must be 'wig' or 'bed'.");
                showHelp = true;
            }
        }
        if (cmd.hasOption("in")) { // input data type
            inputDataType = cmd.getOptionValue("in");
            if (!inputDataType.equals("dnase") && !inputDataType.equals("chip")
                    && !inputDataType.equals("faire") && !inputDataType.equals("atac")) {
                System.out.println(
                        "Parameter error: input data type must be 'dnase', 'chip', 'faire', or 'atac'.");
                showHelp = true;
            }
        }
        if (cmd.hasOption("wc")) { // weight clip
            weight_clip = Integer.parseInt(cmd.getOptionValue("wc"));
        }
        if (cmd.hasOption("t")) { // threshold (standard deviations)
            threshold = Float.parseFloat(cmd.getOptionValue("t"));
        }
        if (cmd.hasOption("o")) { // output directory
            String out = cmd.getOptionValue("o");
            outputDirectory = new File(out);
            if (!outputDirectory.exists() && !outputDirectory.isDirectory()) {
                System.out.println("Output directory '" + out + "' is not a valid directory.");
                showHelp = true;
            }
        }

        if (cmd.hasOption("wg"))
            temp_threshold = Float.parseFloat(cmd.getOptionValue("wg"));
        if (cmd.hasOption("c"))
            ncuts = Double.parseDouble(cmd.getOptionValue("c"));

        // TESTING ONLY
        //   if(cmd.hasOption("w")) // window
        //     window = Long.parseLong(cmd.getOptionValue("w"));
        //if(cmd.hasOption("b")) // window
        //  bandwidth = Long.parseLong(cmd.getOptionValue("b"));

        files = cmd.getArgs(); // input files
        //bgfiles = cmd.getArgs(); // background files
    } catch (Exception e) {
        System.out.println("Error parsing arguments: " + e.getMessage());
        e.printStackTrace();
        showHelp = true;
    }

    if (showHelp || (inputDirectory == null && files.length == 0)) {
        HelpFormatter formatter = new HelpFormatter();
        formatter.printHelp("fseq [options]... [file(s)]...", opts);
        System.exit(1);
    }

    File[] pfiles = getFiles(inputDirectory, files);
    File[] background_files = getFiles(backgroundDirectory, bgfiles);
    File[] ploidy_files = getFiles(ploidyDirectory, ipfiles);

    KDEChromosome[] chrs = null;
    // assume all files are of the same type, if not we'll get parsing errors
    String path = pfiles[0].getPath();
    String extension = path.substring(path.lastIndexOf('.')).toLowerCase();
    System.out.println("Path: " + path + ", extension: " + extension);
    if (extension.equals(".bed")) {
        System.out.println("Parsing BED file.");
        chrs = BedReader.read(pfiles);
    } else if (extension.equals(".sam") || extension.equals(".bam")) {
        System.out.println("Parsing SAM/BAM file.");
        chrs = SamReader.read(pfiles, weight_clip);
    }
    //KDEChromosome[] input = BedReader.read(ifiles);

    //compute fragment offset
    if (fragment_size == -1) {
        fragment_size = wgShiftCalc(chrs);
    }
    fragment_offset = (int) (fragment_size / 2);

    if (ncuts == 0.0d) {
        for (int i = 0; i < chrs.length; ++i) {
            // computes the total read weight of all cuts on a chromosome
            ncuts += chrs[i].getTotalWeight();
        }
    }

    KDEChromosome.Settings settings = null;
    if (bandwidth > 0 || window > 0) {
        settings = new KDEChromosome.Settings(bandwidth, window, threshold, fragment_offset, ncuts,
                inputDataType);
    } else {
        settings = new KDEChromosome.Settings(featureLength, threshold, fragment_offset, ncuts, inputDataType);
    }

    float wg_threshold = wgThreshold(settings, chrs);
    if (temp_threshold != 0f) {
        wg_threshold = temp_threshold;
    }
    //KDEChromosome.Settings bg_settings = null;
    //bg_settings = new KDEChromosome.Settings(featureLength*2, threshold, fragment_offset);

    //int background_size = 0;
    //int input_size = 0;
    //float bg_ratio = 0;
    //float sd = 0;

    if (verbose) {
        System.out.println("Settings: ");
        System.out.println("\twindow=" + (settings.window * 2));
        System.out.println("\tbandwidth=" + (settings.bandwidth));
        //System.out.println("\tfragment offset=" + (settings.offset));
        System.out.println("\tthreshold = " + wg_threshold);
        System.out.println("\test. fragment size = " + fragment_size);
        System.out.println("\tsequence length = " + chrs[0].getSequenceLength());
    }

    //    if(backgroundDirectory != null) {
    //       for(int i = 0; i < input.length; ++i) {
    //          background_size += input[i].getLength();
    //       }
    //       for(int i = 0; i < chrs.length; ++i) {
    //          input_size += chrs[i].getLength();
    //       }
    //       bg_ratio = (float)input_size/(float)background_size;
    //       sd = computeSD(bg_settings, input);
    //       //System.out.println("Sample Ratio: " + bg_ratio);
    //       //System.out.println("Input Size: " + input_size);
    //       //System.out.println("Background Size: " + background_size);
    //       //System.out.println("Input standard deviation: " + (settings.threshold * (float)Math.sqrt((double)bg_ratio * (double)sd * (double)sd)));
    //       //System.out.println("Data standard deviation: " + settings.threshold * computeSD(settings, chrs));
    //    }

    for (int i = 0; i < chrs.length; ++i) {
        if (chrs[i].getFirstPos() == chrs[i].getLastPos()) {
            System.out.println("Warning: " + chrs[i].getChromosome() + " has size zero.  Skipping.");
            continue;
        }
        File ofile = Util.makeUniqueFileWithExtension(outputDirectory, chrs[i].getChromosome(), outputFormat);

        DensityWriter dw = null;
        if (outputFormat.equals("wig")) {
            dw = new WiggleDensityWriter(ofile, chrs[i].getChromosome(), chrs[i].getFirstPos(), step);
        } else {
            if (outputFormat.equals("npf")) {
                dw = new NpfDensityWriter(ofile, chrs[i].getChromosome(), chrs[i].getFirstPos(), step);
            } else {
                dw = new BedDensityWriter(ofile, chrs[i].getChromosome(), chrs[i].getFirstPos(), step);
            }
        }

        //Function takes all? or new function for each?
        //      if(backgroundDirectory != null) {
        //         boolean hit = false;
        //         for(int j = 0; j < background_files.length; ++j) {
        //            if(background_files[j].getName().equals(chrs[i].getChromosome() + ".bff")) {
        //               System.out.println("Running background on Chromosome " + chrs[i].getChromosome());
        //               chrs[i].runBG(settings, dw, verbose, wg_threshold, background_files[j]);
        //               hit = true;
        //            }
        //         }
        //         if(!hit)
        //            System.out.println("No background for Chromosome " + chrs[i].getChromosome());
        //      } else {
        //         if(ploidyDirectory !=)
        //         chrs[i].run(settings, dw, verbose, wg_threshold);
        //      }
        chrs[i].run(settings, dw, verbose, wg_threshold, background_files, ploidy_files);
        dw.close();
    }

    //kde.showGraph();
}

From source file:com.interflora.ftp.SampleFTPS.java

public static final void main(String[] args) {
    boolean storeFile = true, binaryTransfer = false, error = false, listFiles = false, listNames = false,
            hidden = false;/*w w  w . j  a  va2  s .  co  m*/
    boolean localActive = false, useEpsvWithIPv4 = false, feat = false, printHash = false;
    boolean mlst = false, mlsd = false;
    boolean lenient = false;
    long keepAliveTimeout = -1;
    int controlKeepAliveReplyTimeout = -1;
    int minParams = 5; // listings require 3 params
    String protocol = "TLS,false"; // SSL protocol
    String doCommand = null;
    String trustmgr = "all";
    String proxyHost = null;
    int proxyPort = 80;
    String proxyUser = null;
    String proxyPassword = null;
    //sample : rose-misc01.hyd.ftd.untd.com rosedev test123 /TestSftp  C:/Users/skarin/Desktop/RosePaths.txt 
    //172.16.160.70 demand quevfoc5 /TestSftp C:/Users/skarin/Desktop/RosePaths.txt 
    int base = 0;
    for (base = 0; base < args.length; base++) {
        if (args[base].equals("-s")) {
            storeFile = true;
        } else if (args[base].equals("-a")) {
            localActive = true;
        } else if (args[base].equals("-b")) {
            binaryTransfer = true;
        } else if (args[base].equals("-c")) {
            doCommand = args[++base];
            minParams = 3;
        } else if (args[base].equals("-d")) {
            mlsd = true;
            minParams = 3;
        } else if (args[base].equals("-e")) {
            useEpsvWithIPv4 = true;
        } else if (args[base].equals("-f")) {
            feat = true;
            minParams = 3;
        } else if (args[base].equals("-h")) {
            hidden = true;
        } else if (args[base].equals("-k")) {
            keepAliveTimeout = Long.parseLong(args[++base]);
        } else if (args[base].equals("-l")) {
            listFiles = true;
            minParams = 3;
        } else if (args[base].equals("-L")) {
            lenient = true;
        } else if (args[base].equals("-n")) {
            listNames = true;
            minParams = 3;
        } else if (args[base].equals("-p")) {
            protocol = args[++base];
        } else if (args[base].equals("-t")) {
            mlst = true;
            minParams = 3;
        } else if (args[base].equals("-w")) {
            controlKeepAliveReplyTimeout = Integer.parseInt(args[++base]);
        } else if (args[base].equals("-T")) {
            trustmgr = args[++base];
        } else if (args[base].equals("-PrH")) {
            proxyHost = args[++base];
            String parts[] = proxyHost.split(":");
            if (parts.length == 2) {
                proxyHost = parts[0];
                proxyPort = Integer.parseInt(parts[1]);
            }
        } else if (args[base].equals("-PrU")) {
            proxyUser = args[++base];
        } else if (args[base].equals("-PrP")) {
            proxyPassword = args[++base];
        } else if (args[base].equals("-#")) {
            printHash = true;
        } else {
            break;
        }
    }

    int remain = args.length - base;
    if (remain < minParams) // server, user, pass, remote, local [protocol]
    {
        System.err.println(USAGE);
        System.exit(1);
    }

    String server = args[base++];
    int port = 0;
    String parts[] = server.split(":");
    if (parts.length == 2) {
        server = parts[0];
        port = Integer.parseInt(parts[1]);
    }
    String username = args[base++];
    String password = args[base++];

    String remote = null;
    if (args.length - base > 0) {
        remote = args[base++];
    }

    String local = null;
    if (args.length - base > 0) {
        local = args[base++];
    }

    final FTPClient ftp;
    if (protocol == null) {
        if (proxyHost != null) {
            System.out.println("Using HTTP proxy server: " + proxyHost);
            ftp = new FTPHTTPClient(proxyHost, proxyPort, proxyUser, proxyPassword);
        } else {
            ftp = new FTPClient();
        }
    } else {
        FTPSClient ftps;
        if (protocol.equals("true")) {
            ftps = new FTPSClient(true);
        } else if (protocol.equals("false")) {
            ftps = new FTPSClient(false);
        } else {
            String prot[] = protocol.split(",");
            if (prot.length == 1) { // Just protocol
                ftps = new FTPSClient(protocol);
            } else { // protocol,true|false
                ftps = new FTPSClient(prot[0], Boolean.parseBoolean(prot[1]));
            }
        }
        ftp = ftps;
        if ("all".equals(trustmgr)) {
            ftps.setTrustManager(TrustManagerUtils.getAcceptAllTrustManager());
        } else if ("valid".equals(trustmgr)) {
            ftps.setTrustManager(TrustManagerUtils.getValidateServerCertificateTrustManager());
        } else if ("none".equals(trustmgr)) {
            ftps.setTrustManager(null);
        }
        /* try{
         //ftps.setFileType(FTP.ASCII_FILE_TYPE);
         ftps.execPBSZ(0); // Set protection buffer size
         ftps.execPROT("C"); // Set data channel protection to private
         }catch(IOException ex ){ex.printStackTrace();};
        */
    }
    // System.out.println("After I/O Exception");

    if (printHash) {
        ftp.setCopyStreamListener(createListener());
    }
    if (keepAliveTimeout >= 0) {
        ftp.setControlKeepAliveTimeout(keepAliveTimeout);
    }
    if (controlKeepAliveReplyTimeout >= 0) {
        ftp.setControlKeepAliveReplyTimeout(controlKeepAliveReplyTimeout);
    }
    ftp.setListHiddenFiles(hidden);

    // suppress login details
    ftp.addProtocolCommandListener(new PrintCommandListener(new PrintWriter(System.out), true));

    try {
        int reply;
        if (port > 0) {
            ftp.connect(server, port);
        } else {
            System.out.println("Trying to Connect to the server \t" + server);
            ftp.connect(server);
        }
        System.out.println("Connected to " + server + " on " + (port > 0 ? port : ftp.getDefaultPort()));

        // After connection attempt, you should check the reply code to verify
        // success.
        reply = ftp.getReplyCode();

        if (!FTPReply.isPositiveCompletion(reply)) {
            ftp.disconnect();
            System.err.println("FTP server refused connection.");
            System.exit(1);
        }
    } catch (IOException e) {
        if (ftp.isConnected()) {
            try {
                ftp.disconnect();
            } catch (IOException f) {
                // do nothing
            }
        }
        System.err.println("Could not connect to server.");
        e.printStackTrace();
        System.exit(1);
    }

    __main: try {
        if (!ftp.login(username, password)) {
            ftp.logout();
            error = true;
            break __main;
        }

        System.out.println("Remote system is " + ftp.getSystemType());

        if (binaryTransfer) {
            ftp.setFileType(FTP.BINARY_FILE_TYPE);
        }

        // Use passive mode as default because most of us are
        // behind firewalls these days.
        if (localActive) {
            ftp.enterLocalActiveMode();
        } else {
            ftp.enterLocalPassiveMode();
        }

        ftp.setUseEPSVwithIPv4(useEpsvWithIPv4);

        if (storeFile) {
            //InputStream input;
            File fname = new File(local);

            FileInputStream input = new FileInputStream(fname);
            String localfilename = fname.getName();
            System.out.println("Local file name " + localfilename);

            ftp.storeFile(remote + "/test/" + localfilename, input);

            input.close();
        } else if (listFiles) {
            if (lenient) {
                FTPClientConfig config = new FTPClientConfig();
                config.setLenientFutureDates(true);
                ftp.configure(config);
            }

            for (FTPFile f : ftp.listFiles(remote)) {
                System.out.println(f.getRawListing());
                System.out.println(f.toFormattedString());
            }
        } else if (mlsd) {
            for (FTPFile f : ftp.mlistDir(remote)) {
                System.out.println(f.getRawListing());
                System.out.println(f.toFormattedString());
            }
        } else if (mlst) {
            FTPFile f = ftp.mlistFile(remote);
            if (f != null) {
                System.out.println(f.toFormattedString());
            }
        } else if (listNames) {
            for (String s : ftp.listNames(remote)) {
                System.out.println(s);
            }
        } else if (feat) {
            // boolean feature check
            if (remote != null) { // See if the command is present
                if (ftp.hasFeature(remote)) {
                    System.out.println("Has feature: " + remote);
                } else {
                    if (FTPReply.isPositiveCompletion(ftp.getReplyCode())) {
                        System.out.println("FEAT " + remote + " was not detected");
                    } else {
                        System.out.println("Command failed: " + ftp.getReplyString());
                    }
                }

                // Strings feature check
                String[] features = ftp.featureValues(remote);
                if (features != null) {
                    for (String f : features) {
                        System.out.println("FEAT " + remote + "=" + f + ".");
                    }
                } else {
                    if (FTPReply.isPositiveCompletion(ftp.getReplyCode())) {
                        System.out.println("FEAT " + remote + " is not present");
                    } else {
                        System.out.println("Command failed: " + ftp.getReplyString());
                    }
                }
            } else {
                if (ftp.features()) {
                    //                           Command listener has already printed the output
                } else {
                    System.out.println("Failed: " + ftp.getReplyString());
                }
            }
        } else if (doCommand != null) {
            if (ftp.doCommand(doCommand, remote)) {
                //                     Command listener has already printed the output
                //                       for(String s : ftp.getReplyStrings()) {
                //                           System.out.println(s);
                //                       }
            } else {
                System.out.println("Failed: " + ftp.getReplyString());
            }
        } else {
            OutputStream output;

            output = new FileOutputStream(local);

            ftp.retrieveFile(remote, output);

            output.close();
        }

        ftp.noop(); // check that control connection is working OK

        ftp.logout();
    } catch (FTPConnectionClosedException e) {
        error = true;
        System.err.println("Server closed connection.");
        e.printStackTrace();
    } catch (IOException e) {
        error = true;
        e.printStackTrace();
    } finally {
        if (ftp.isConnected()) {
            try {
                ftp.disconnect();
            } catch (IOException f) {
                // do nothing
            }
        }
    }

    System.exit(error ? 1 : 0);
}

From source file:com.linkedin.databus2.client.util.DbusClientClusterUtil.java

/**
 * @param args/*  w  w  w  .ja va  2  s .  c o m*/
 * DbusClientClusterUtil -s <serverList> -n <namespace> -g <group> -d <dir>     members
 *                                                     leader 
 *                                                    keys 
 *                                                    readSCN <key> 
 *                                                    writeSCN <key> SCN [OFFSET]
 *                                                 remove <key>
 *                                                 readLastTS
 *                                                 writeLastTS TIMESTAMP            
 */
public static void main(String[] args) {
    try {
        GnuParser cmdLineParser = new GnuParser();
        Options options = new Options();
        options.addOption("n", true, "Zookeeper namespace  [/DatabusClient")
                .addOption("g", true, "Groupname [default-group-name] ")
                .addOption("d", true, "Shared directory name [shareddata] ")
                .addOption("s", true, "Zookeeper server list [localhost:2181] ").addOption("h", false, "help");
        CommandLine cmdLineArgs = cmdLineParser.parse(options, args, false);

        if (cmdLineArgs.hasOption('h')) {
            usage();
            System.exit(0);
        }

        String namespace = cmdLineArgs.getOptionValue('n');
        if (namespace == null || namespace.isEmpty()) {
            namespace = "/DatabusClient";
        }
        String groupname = cmdLineArgs.getOptionValue('g');
        if (groupname == null || groupname.isEmpty()) {
            groupname = "default-group-name";
        }
        String sharedDir = cmdLineArgs.getOptionValue('d');
        if (sharedDir == null || sharedDir.isEmpty()) {
            sharedDir = "shareddata";
        }
        String serverList = cmdLineArgs.getOptionValue('s');
        if (serverList == null || serverList.isEmpty()) {
            serverList = "localhost:2181";
        }
        String[] fns = cmdLineArgs.getArgs();
        if (fns.length < 1) {
            usage();
            System.exit(1);
        }
        String function = fns[0];
        String arg1 = (fns.length > 1) ? fns[1] : null;
        String arg2 = (fns.length > 2) ? fns[2] : null;
        try {
            String memberName = "cmd-line-tool";
            DatabusClientNode clusterNode = new DatabusClientNode(new DatabusClientNode.StaticConfig(true,
                    serverList, 2000, 5000, namespace, groupname, memberName, false, sharedDir));
            DatabusClientGroupMember member = clusterNode.getMember(namespace, groupname, memberName);
            if (member == null || !member.joinWithoutLeadershipDuties()) {
                System.err.println("Initialization failed for: " + member);
                System.exit(1);
            }

            if (function.equals("members")) {
                List<String> mlist = member.getMembers();
                for (String m : mlist) {
                    System.out.println(m);
                }

            } else if (function.equals("leader")) {
                String leader = member.getLeader();
                System.out.println(leader);

            } else if (function.equals("keys")) {
                List<String> keyList = member.getSharedKeys();
                if (keyList != null) {
                    for (String m : keyList) {
                        System.out.println(m);
                    }
                }
            } else if (function.equals("readSCN")) {
                List<String> keyList;
                if (arg1 == null) {
                    keyList = member.getSharedKeys();
                } else {
                    keyList = new ArrayList<String>();
                    keyList.add(arg1);
                }
                if (keyList != null) {
                    for (String k : keyList) {
                        if (!k.equals(DatabusClientDSCUpdater.DSCKEY)) {
                            Checkpoint cp = (Checkpoint) member.readSharedData(k);
                            if (cp != null) {
                                System.out.println(k + " " + cp.getWindowScn() + " " + cp.getWindowOffset());
                            } else {
                                System.err.println(k + " null null");
                            }
                        }
                    }
                }

            } else if (function.equals("writeSCN")) {
                if (arg1 != null && arg2 != null) {
                    Checkpoint cp = new Checkpoint();
                    cp.setConsumptionMode(DbusClientMode.ONLINE_CONSUMPTION);
                    cp.setWindowScn(Long.parseLong(arg2));
                    if (fns.length > 3) {
                        cp.setWindowOffset(Integer.parseInt(fns[3]));
                    } else {
                        cp.setWindowOffset(-1);
                    }
                    if (member.writeSharedData(arg1, cp)) {
                        System.out.println(arg1 + " " + cp.getWindowScn() + " " + cp.getWindowOffset());
                    } else {
                        System.err.println("Write failed! " + member + " couldn't write key=" + arg1);
                        System.exit(1);
                    }
                } else {
                    usage();
                    System.exit(1);
                }
            } else if (function.equals("readLastTs")) {
                Long timeInMs = (Long) member.readSharedData(DatabusClientDSCUpdater.DSCKEY);
                if (timeInMs != null) {
                    System.out.println(DatabusClientDSCUpdater.DSCKEY + " " + timeInMs.longValue());
                } else {
                    System.err.println(DatabusClientDSCUpdater.DSCKEY + " null");
                }
            } else if (function.equals("writeLastTs")) {
                if (arg1 != null) {
                    Long ts = Long.parseLong(arg1);
                    if (member.writeSharedData(DatabusClientDSCUpdater.DSCKEY, ts)) {
                        System.out.println(DatabusClientDSCUpdater.DSCKEY + " " + ts);
                    } else {
                        System.err.println("Write failed! " + member + " couldn't write key="
                                + DatabusClientDSCUpdater.DSCKEY);
                        System.exit(1);
                    }

                } else {
                    usage();
                    System.exit(1);
                }
            } else if (function.equals("remove")) {
                if (!member.removeSharedData(arg1)) {
                    System.err.println("Remove failed! " + arg1);
                    System.exit(1);
                }
            } else if (function.equals("create")) {
                if (!member.createPaths()) {
                    System.err.println("Create path failed!");
                    System.exit(1);
                }

            } else {
                usage();
                System.exit(1);
            }
        } catch (InvalidConfigException e) {
            e.printStackTrace();
            usage();
            System.exit(1);
        }

    } catch (ParseException e) {
        usage();
        System.exit(1);
    }

}

From source file:com.paul.linknet.FTPClientExample.java

public static void main(String[] args) throws UnknownHostException {
    boolean storeFile = false, binaryTransfer = false, error = false, listFiles = false, listNames = false,
            hidden = false;//  w w w  .  j  av  a  2 s  . c  o  m
    boolean localActive = false, useEpsvWithIPv4 = false, feat = false, printHash = false;
    boolean mlst = false, mlsd = false;
    boolean lenient = false;
    long keepAliveTimeout = -1;
    int controlKeepAliveReplyTimeout = -1;
    int minParams = 5; // listings require 3 params
    String protocol = null; // SSL protocol
    String doCommand = null;
    String trustmgr = null;
    String proxyHost = null;
    int proxyPort = 80;
    String proxyUser = null;
    String proxyPassword = null;
    String username = null;
    String password = null;

    int base = 0;
    for (base = 0; base < args.length; base++) {
        if (args[base].equals("-s")) {
            storeFile = true;
        } else if (args[base].equals("-a")) {
            localActive = true;
        } else if (args[base].equals("-A")) {
            username = "anonymous";
            password = System.getProperty("user.name") + "@" + InetAddress.getLocalHost().getHostName();
        } else if (args[base].equals("-b")) {
            binaryTransfer = true;
        } else if (args[base].equals("-c")) {
            doCommand = args[++base];
            minParams = 3;
        } else if (args[base].equals("-d")) {
            mlsd = true;
            minParams = 3;
        } else if (args[base].equals("-e")) {
            useEpsvWithIPv4 = true;
        } else if (args[base].equals("-f")) {
            feat = true;
            minParams = 3;
        } else if (args[base].equals("-h")) {
            hidden = true;
        } else if (args[base].equals("-k")) {
            keepAliveTimeout = Long.parseLong(args[++base]);
        } else if (args[base].equals("-l")) {
            listFiles = true;
            minParams = 3;
        } else if (args[base].equals("-L")) {
            lenient = true;
        } else if (args[base].equals("-n")) {
            listNames = true;
            minParams = 3;
        } else if (args[base].equals("-p")) {
            protocol = args[++base];
        } else if (args[base].equals("-t")) {
            mlst = true;
            minParams = 3;
        } else if (args[base].equals("-w")) {
            controlKeepAliveReplyTimeout = Integer.parseInt(args[++base]);
        } else if (args[base].equals("-T")) {
            trustmgr = args[++base];
        } else if (args[base].equals("-PrH")) {
            proxyHost = args[++base];
            String parts[] = proxyHost.split(":");
            if (parts.length == 2) {
                proxyHost = parts[0];
                proxyPort = Integer.parseInt(parts[1]);
            }
        } else if (args[base].equals("-PrU")) {
            proxyUser = args[++base];
        } else if (args[base].equals("-PrP")) {
            proxyPassword = args[++base];
        } else if (args[base].equals("-#")) {
            printHash = true;
        } else {
            break;
        }
    }

    int remain = args.length - base;
    if (username != null) {
        minParams -= 2;
    }
    if (remain < minParams) // server, user, pass, remote, local [protocol]
    {
        System.err.println(USAGE);
        System.exit(1);
    }

    String server = args[base++];
    int port = 0;
    String parts[] = server.split(":");
    if (parts.length == 2) {
        server = parts[0];
        port = Integer.parseInt(parts[1]);
    }
    if (username == null) {
        username = args[base++];
        password = args[base++];
    }

    String remote = null;
    if (args.length - base > 0) {
        remote = args[base++];
    }

    String local = null;
    if (args.length - base > 0) {
        local = args[base++];
    }

    final FTPClient ftp;
    if (protocol == null) {
        if (proxyHost != null) {
            System.out.println("Using HTTP proxy server: " + proxyHost);
            ftp = new FTPHTTPClient(proxyHost, proxyPort, proxyUser, proxyPassword);
        } else {
            ftp = new FTPClient();
        }
    } else {
        FTPSClient ftps;
        if (protocol.equals("true")) {
            ftps = new FTPSClient(true);
        } else if (protocol.equals("false")) {
            ftps = new FTPSClient(false);
        } else {
            String prot[] = protocol.split(",");
            if (prot.length == 1) { // Just protocol
                ftps = new FTPSClient(protocol);
            } else { // protocol,true|false
                ftps = new FTPSClient(prot[0], Boolean.parseBoolean(prot[1]));
            }
        }
        ftp = ftps;
        if ("all".equals(trustmgr)) {
            ftps.setTrustManager(TrustManagerUtils.getAcceptAllTrustManager());
        } else if ("valid".equals(trustmgr)) {
            ftps.setTrustManager(TrustManagerUtils.getValidateServerCertificateTrustManager());
        } else if ("none".equals(trustmgr)) {
            ftps.setTrustManager(null);
        }
    }

    if (printHash) {
        ftp.setCopyStreamListener(createListener());
    }
    if (keepAliveTimeout >= 0) {
        ftp.setControlKeepAliveTimeout(keepAliveTimeout);
    }
    if (controlKeepAliveReplyTimeout >= 0) {
        ftp.setControlKeepAliveReplyTimeout(controlKeepAliveReplyTimeout);
    }
    ftp.setListHiddenFiles(hidden);

    // suppress login details
    ftp.addProtocolCommandListener(new PrintCommandListener(new PrintWriter(System.out), true));

    try {
        int reply;
        if (port > 0) {
            ftp.connect(server, port);
        } else {
            ftp.connect(server);
        }
        System.out.println("Connected to " + server + " on " + (port > 0 ? port : ftp.getDefaultPort()));

        // After connection attempt, you should check the reply code to verify
        // success.
        reply = ftp.getReplyCode();

        if (!FTPReply.isPositiveCompletion(reply)) {
            ftp.disconnect();
            System.err.println("FTP server refused connection.");
            System.exit(1);
        }
    } catch (IOException e) {
        if (ftp.isConnected()) {
            try {
                ftp.disconnect();
            } catch (IOException f) {
                // do nothing
            }
        }
        System.err.println("Could not connect to server.");
        e.printStackTrace();
        System.exit(1);
    }

    __main: try {
        if (!ftp.login(username, password)) {
            ftp.logout();
            error = true;
            break __main;
        }

        System.out.println("Remote system is " + ftp.getSystemType());

        if (binaryTransfer) {
            ftp.setFileType(FTP.BINARY_FILE_TYPE);
        }

        // Use passive mode as default because most of us are
        // behind firewalls these days.
        if (localActive) {
            ftp.enterLocalActiveMode();
        } else {
            ftp.enterLocalPassiveMode();
        }

        ftp.setUseEPSVwithIPv4(useEpsvWithIPv4);

        if (storeFile) {
            InputStream input;

            input = new FileInputStream(local);

            ftp.storeFile(remote, input);

            input.close();
        } else if (listFiles) {
            if (lenient) {
                FTPClientConfig config = new FTPClientConfig();
                config.setLenientFutureDates(true);
                ftp.configure(config);
            }

            for (FTPFile f : ftp.listFiles(remote)) {
                System.out.println(f.getRawListing());
                System.out.println(f.toFormattedString());
            }
        } else if (mlsd) {
            for (FTPFile f : ftp.mlistDir(remote)) {
                System.out.println(f.getRawListing());
                System.out.println(f.toFormattedString());
            }
        } else if (mlst) {
            FTPFile f = ftp.mlistFile(remote);
            if (f != null) {
                System.out.println(f.toFormattedString());
            }
        } else if (listNames) {
            for (String s : ftp.listNames(remote)) {
                System.out.println(s);
            }
        } else if (feat) {
            // boolean feature check
            if (remote != null) { // See if the command is present
                if (ftp.hasFeature(remote)) {
                    System.out.println("Has feature: " + remote);
                } else {
                    if (FTPReply.isPositiveCompletion(ftp.getReplyCode())) {
                        System.out.println("FEAT " + remote + " was not detected");
                    } else {
                        System.out.println("Command failed: " + ftp.getReplyString());
                    }
                }

                // Strings feature check
                String[] features = ftp.featureValues(remote);
                if (features != null) {
                    for (String f : features) {
                        System.out.println("FEAT " + remote + "=" + f + ".");
                    }
                } else {
                    if (FTPReply.isPositiveCompletion(ftp.getReplyCode())) {
                        System.out.println("FEAT " + remote + " is not present");
                    } else {
                        System.out.println("Command failed: " + ftp.getReplyString());
                    }
                }
            } else {
                if (ftp.features()) {
                    //                        Command listener has already printed the output
                } else {
                    System.out.println("Failed: " + ftp.getReplyString());
                }
            }
        } else if (doCommand != null) {
            if (ftp.doCommand(doCommand, remote)) {
                //                  Command listener has already printed the output
                //                    for(String s : ftp.getReplyStrings()) {
                //                        System.out.println(s);
                //                    }
            } else {
                System.out.println("Failed: " + ftp.getReplyString());
            }
        } else {
            OutputStream output;

            output = new FileOutputStream(local);

            ftp.retrieveFile(remote, output);

            output.close();
        }

        ftp.noop(); // check that control connection is working OK

        ftp.logout();
    } catch (FTPConnectionClosedException e) {
        error = true;
        System.err.println("Server closed connection.");
        e.printStackTrace();
    } catch (IOException e) {
        error = true;
        e.printStackTrace();
    } finally {
        if (ftp.isConnected()) {
            try {
                ftp.disconnect();
            } catch (IOException f) {
                // do nothing
            }
        }
    }

    System.exit(error ? 1 : 0);
}

From source file:apps.LuceneQuery.java

public static void main(String[] args) {
    Options options = new Options();

    options.addOption("d", null, true, "index directory");
    options.addOption("i", null, true, "input file");
    options.addOption("s", null, true, "stop word file");
    options.addOption("n", null, true, "max # of results");
    options.addOption("o", null, true, "a TREC-style output file");
    options.addOption("r", null, true, "an optional QREL file, if specified,"
            + "we save results only for queries for which we find at least one relevant entry.");

    options.addOption("prob", null, true, "question sampling probability");
    options.addOption("max_query_qty", null, true, "a maximum number of queries to run");
    options.addOption("bm25_b", null, true, "BM25 parameter: b");
    options.addOption("bm25_k1", null, true, "BM25 parameter: k1");
    options.addOption("bm25fixed", null, false, "use the fixed BM25 similarity");

    options.addOption("seed", null, true, "random seed");

    Joiner commaJoin = Joiner.on(',');
    Joiner spaceJoin = Joiner.on(' ');

    options.addOption("source_type", null, true,
            "query source type: " + commaJoin.join(SourceFactory.getQuerySourceList()));

    CommandLineParser parser = new org.apache.commons.cli.GnuParser();

    QrelReader qrels = null;//from ww w .jav a2s.co  m

    try {

        CommandLine cmd = parser.parse(options, args);

        String indexDir = null;

        if (cmd.hasOption("d")) {
            indexDir = cmd.getOptionValue("d");
        } else {
            Usage("Specify 'index directory'", options);
        }

        String inputFileName = null;

        if (cmd.hasOption("i")) {
            inputFileName = cmd.getOptionValue("i");
        } else {
            Usage("Specify 'input file'", options);
        }

        DictNoComments stopWords = null;

        if (cmd.hasOption("s")) {
            String stopWordFileName = cmd.getOptionValue("s");
            stopWords = new DictNoComments(new File(stopWordFileName), true /* lowercasing */);
            System.out.println("Using the stopword file: " + stopWordFileName);
        }

        String sourceName = cmd.getOptionValue("source_type");

        if (sourceName == null)
            Usage("Specify document source type", options);

        int numRet = 100;

        if (cmd.hasOption("n")) {
            numRet = Integer.parseInt(cmd.getOptionValue("n"));
            System.out.println("Retrieving at most " + numRet + " candidate entries.");
        }

        String trecOutFileName = null;

        if (cmd.hasOption("o")) {
            trecOutFileName = cmd.getOptionValue("o");
        } else {
            Usage("Specify 'a TREC-style output file'", options);
        }

        double fProb = 1.0f;

        if (cmd.hasOption("prob")) {
            try {
                fProb = Double.parseDouble(cmd.getOptionValue("prob"));
            } catch (NumberFormatException e) {
                Usage("Wrong format for 'question sampling probability'", options);
            }
        }

        if (fProb <= 0 || fProb > 1) {
            Usage("Question sampling probability should be >0 and <=1", options);
        }

        System.out.println("Sample the following fraction of questions: " + fProb);

        float bm25_k1 = UtilConst.BM25_K1_DEFAULT, bm25_b = UtilConst.BM25_B_DEFAULT;

        if (cmd.hasOption("bm25_k1")) {
            try {
                bm25_k1 = Float.parseFloat(cmd.getOptionValue("bm25_k1"));
            } catch (NumberFormatException e) {
                Usage("Wrong format for 'bm25_k1'", options);
            }
        }

        if (cmd.hasOption("bm25_b")) {
            try {
                bm25_b = Float.parseFloat(cmd.getOptionValue("bm25_b"));
            } catch (NumberFormatException e) {
                Usage("Wrong format for 'bm25_b'", options);
            }
        }

        long seed = 0;

        String tmpl = cmd.getOptionValue("seed");

        if (tmpl != null)
            seed = Long.parseLong(tmpl);

        System.out.println("Using seed: " + seed);

        Random randGen = new Random(seed);

        System.out.println(String.format("BM25 parameters k1=%f b=%f ", bm25_k1, bm25_b));

        boolean useFixedBM25 = cmd.hasOption("bm25fixed");

        EnglishAnalyzer analyzer = new EnglishAnalyzer();
        Similarity similarity = null;

        if (useFixedBM25) {
            System.out.println(String.format("Using fixed BM25Simlarity, k1=%f b=%f", bm25_k1, bm25_b));
            similarity = new BM25SimilarityFix(bm25_k1, bm25_b);
        } else {
            System.out.println(String.format("Using Lucene BM25Similarity, k1=%f b=%f", bm25_k1, bm25_b));
            similarity = new BM25Similarity(bm25_k1, bm25_b);
        }

        int maxQueryQty = Integer.MAX_VALUE;

        if (cmd.hasOption("max_query_qty")) {
            try {
                maxQueryQty = Integer.parseInt(cmd.getOptionValue("max_query_qty"));
            } catch (NumberFormatException e) {
                Usage("Wrong format for 'max_query_qty'", options);
            }
        }

        System.out.println(String.format("Executing at most %d queries", maxQueryQty));

        if (cmd.hasOption("r")) {
            String qrelFile = cmd.getOptionValue("r");
            System.out.println("Using the qrel file: '" + qrelFile
                    + "', queries not returning a relevant entry will be ignored.");
            qrels = new QrelReader(qrelFile);
        }

        System.out.println(String.format("Using indexing directory %s", indexDir));

        LuceneCandidateProvider candProvider = new LuceneCandidateProvider(indexDir, analyzer, similarity);
        TextCleaner textCleaner = new TextCleaner(stopWords);

        QuerySource inpQuerySource = SourceFactory.createQuerySource(sourceName, inputFileName);
        QueryEntry inpQuery = null;

        BufferedWriter trecOutFile = new BufferedWriter(new FileWriter(new File(trecOutFileName)));

        int questNum = 0, questQty = 0;

        long totalTimeMS = 0;

        while ((inpQuery = inpQuerySource.next()) != null) {
            if (questQty >= maxQueryQty)
                break;
            ++questNum;

            String queryID = inpQuery.mQueryId;

            if (randGen.nextDouble() <= fProb) {
                ++questQty;

                String tokQuery = spaceJoin.join(textCleaner.cleanUp(inpQuery.mQueryText));
                String query = TextCleaner.luceneSafeCleanUp(tokQuery).trim();

                ResEntry[] results = null;

                if (query.isEmpty()) {
                    results = new ResEntry[0];
                    System.out.println(String.format("WARNING, empty query id = '%s'", inpQuery.mQueryId));
                } else {

                    try {
                        long start = System.currentTimeMillis();

                        results = candProvider.getCandidates(questNum, query, numRet);

                        long end = System.currentTimeMillis();
                        long searchTimeMS = end - start;
                        totalTimeMS += searchTimeMS;

                        System.out.println(String.format(
                                "Obtained results for the query # %d (answered %d queries), queryID %s the search took %d ms, we asked for max %d entries got %d",
                                questNum, questQty, queryID, searchTimeMS, numRet, results.length));

                    } catch (ParseException e) {
                        e.printStackTrace();
                        System.err.println(
                                "Error parsing query: " + query + " orig question is :" + inpQuery.mQueryText);
                        System.exit(1);
                    }
                }

                boolean bSave = true;

                if (qrels != null) {
                    boolean bOk = false;
                    for (ResEntry r : results) {
                        String label = qrels.get(queryID, r.mDocId);
                        if (candProvider.isRelevLabel(label, 1)) {
                            bOk = true;
                            break;
                        }
                    }
                    if (!bOk)
                        bSave = false;
                }

                //            System.out.println(String.format("Ranking results the query # %d queryId='%s' save results? %b", 
                //                                              questNum, queryID, bSave));          
                if (bSave) {
                    saveTrecResults(queryID, results, trecOutFile, TREC_RUN, numRet);
                }
            }

            if (questNum % 1000 == 0)
                System.out.println(String.format("Proccessed %d questions", questNum));

        }

        System.out.println(String.format("Proccessed %d questions, the search took %f MS on average", questQty,
                (float) totalTimeMS / questQty));

        trecOutFile.close();

    } catch (ParseException e) {
        e.printStackTrace();
        Usage("Cannot parse arguments: " + e, options);
    } catch (Exception e) {
        System.err.println("Terminating due to an exception: " + e);
        System.exit(1);
    }
}

From source file:CTmousetrack.java

public static void main(String[] args) {

    String outLoc = new String("." + File.separator + "CTdata"); // Location of the base output data folder; only used when writing out CT data to a local folder
    String srcName = "CTmousetrack"; // name of the output CT source
    long blockPts = 10; // points per block flush
    long sampInterval = 10; // time between sampling updates, msec
    double trimTime = 0.0; // amount of data to keep (trim time), sec
    boolean debug = false; // turn on debug?

    // Specify the CT output connection
    CTWriteMode writeMode = CTWriteMode.LOCAL; // The selected mode for writing out CT data
    String serverHost = ""; // Server (FTP or HTTP/S) host:port
    String serverUser = ""; // Server (FTP or HTTPS) username
    String serverPassword = ""; // Server (FTP or HTTPS) password

    // For UDP output mode
    DatagramSocket udpServerSocket = null;
    InetAddress udpServerAddress = null;
    String udpHost = "";
    int udpPort = -1;

    // Concatenate all of the CTWriteMode types
    String possibleWriteModes = "";
    for (CTWriteMode wm : CTWriteMode.values()) {
        possibleWriteModes = possibleWriteModes + ", " + wm.name();
    }//  w  w  w . ja v a2 s  .  com
    // Remove ", " from start of string
    possibleWriteModes = possibleWriteModes.substring(2);

    //
    // Argument processing using Apache Commons CLI
    //
    // 1. Setup command line options
    Options options = new Options();
    options.addOption("h", "help", false, "Print this message.");
    options.addOption(Option.builder("o").argName("base output dir").hasArg().desc(
            "Base output directory when writing data to local folder (i.e., this is the location of CTdata folder); default = \""
                    + outLoc + "\".")
            .build());
    options.addOption(Option.builder("s").argName("source name").hasArg()
            .desc("Name of source to write data to; default = \"" + srcName + "\".").build());
    options.addOption(Option.builder("b").argName("points per block").hasArg()
            .desc("Number of points per block; UDP output mode will use 1 point/block; default = "
                    + Long.toString(blockPts) + ".")
            .build());
    options.addOption(Option.builder("dt").argName("samp interval msec").hasArg()
            .desc("Sampling period in msec; default = " + Long.toString(sampInterval) + ".").build());
    options.addOption(Option.builder("t").argName("trim time sec").hasArg().desc(
            "Trim (ring-buffer loop) time (sec); this is only used when writing data to local folder; specify 0 for indefinite; default = "
                    + Double.toString(trimTime) + ".")
            .build());
    options.addOption(
            Option.builder("w").argName("write mode").hasArg()
                    .desc("Type of write connection; one of " + possibleWriteModes
                            + "; all but UDP mode write out to CT; default = " + writeMode.name() + ".")
                    .build());
    options.addOption(Option.builder("host").argName("host[:port]").hasArg()
            .desc("Host:port when writing via FTP, HTTP, HTTPS, UDP.").build());
    options.addOption(Option.builder("u").argName("username,password").hasArg()
            .desc("Comma-delimited username and password when writing to CT via FTP or HTTPS.").build());
    options.addOption("x", "debug", false, "Enable CloudTurbine debug output.");

    // 2. Parse command line options
    CommandLineParser parser = new DefaultParser();
    CommandLine line = null;
    try {
        line = parser.parse(options, args);
    } catch (ParseException exp) { // oops, something went wrong
        System.err.println("Command line argument parsing failed: " + exp.getMessage());
        return;
    }

    // 3. Retrieve the command line values
    if (line.hasOption("help")) { // Display help message and quit
        HelpFormatter formatter = new HelpFormatter();
        formatter.setWidth(120);
        formatter.printHelp("CTmousetrack", "", options,
                "NOTE: UDP output is a special non-CT output mode where single x,y points are sent via UDP to the specified host:port.");
        return;
    }

    outLoc = line.getOptionValue("o", outLoc);
    if (!outLoc.endsWith("\\") && !outLoc.endsWith("/")) {
        outLoc = outLoc + File.separator;
    }
    // Make sure the base output folder location ends in "CTdata"
    if (!outLoc.endsWith("CTdata\\") && !outLoc.endsWith("CTdata/")) {
        outLoc = outLoc + "CTdata" + File.separator;
    }

    srcName = line.getOptionValue("s", srcName);

    blockPts = Long.parseLong(line.getOptionValue("b", Long.toString(blockPts)));

    sampInterval = Long.parseLong(line.getOptionValue("dt", Long.toString(sampInterval)));

    trimTime = Double.parseDouble(line.getOptionValue("t", Double.toString(trimTime)));

    // Type of output connection
    String writeModeStr = line.getOptionValue("w", writeMode.name());
    boolean bMatch = false;
    for (CTWriteMode wm : CTWriteMode.values()) {
        if (wm.name().toLowerCase().equals(writeModeStr.toLowerCase())) {
            writeMode = wm;
            bMatch = true;
        }
    }
    if (!bMatch) {
        System.err.println("Unrecognized write mode, \"" + writeModeStr + "\"; write mode must be one of "
                + possibleWriteModes);
        System.exit(0);
    }
    if (writeMode != CTWriteMode.LOCAL) {
        // User must have specified the host
        // If FTP or HTTPS, they may also specify username/password
        serverHost = line.getOptionValue("host", serverHost);
        if (serverHost.isEmpty()) {
            System.err.println(
                    "When using write mode \"" + writeModeStr + "\", you must specify the server host.");
            System.exit(0);
        }
        if (writeMode == CTWriteMode.UDP) {
            // Force blockPts to be 1
            blockPts = 1;
            // User must have specified both host and port
            int colonIdx = serverHost.indexOf(':');
            if ((colonIdx == -1) || (colonIdx >= serverHost.length() - 1)) {
                System.err.println(
                        "For UDP output mode, both the host and port (<host>:<port>)) must be specified.");
                System.exit(0);
            }
            udpHost = serverHost.substring(0, colonIdx);
            String udpPortStr = serverHost.substring(colonIdx + 1);
            try {
                udpPort = Integer.parseInt(udpPortStr);
            } catch (NumberFormatException nfe) {
                System.err.println("The UDP port must be a positive integer.");
                System.exit(0);
            }
        }
        if ((writeMode == CTWriteMode.FTP) || (writeMode == CTWriteMode.HTTPS)) {
            String userpassStr = line.getOptionValue("u", "");
            if (!userpassStr.isEmpty()) {
                // This string should be comma-delimited username and password
                String[] userpassCSV = userpassStr.split(",");
                if (userpassCSV.length != 2) {
                    System.err.println("When specifying a username and password for write mode \""
                            + writeModeStr + "\", separate the username and password by a comma.");
                    System.exit(0);
                }
                serverUser = userpassCSV[0];
                serverPassword = userpassCSV[1];
            }
        }
    }

    debug = line.hasOption("debug");

    System.err.println("CTmousetrack parameters:");
    System.err.println("\toutput mode = " + writeMode.name());
    if (writeMode == CTWriteMode.UDP) {
        System.err.println("\twrite to " + udpHost + ":" + udpPort);
    } else {
        System.err.println("\tsource = " + srcName);
        System.err.println("\ttrim time = " + trimTime + " sec");
    }
    System.err.println("\tpoints per block = " + blockPts);
    System.err.println("\tsample interval = " + sampInterval + " msec");

    try {
        //
        // Setup CTwriter or UDP output
        //
        CTwriter ctw = null;
        CTinfo.setDebug(debug);
        if (writeMode == CTWriteMode.LOCAL) {
            ctw = new CTwriter(outLoc + srcName, trimTime);
            System.err.println("\tdata will be written to local folder \"" + outLoc + "\"");
        } else if (writeMode == CTWriteMode.FTP) {
            CTftp ctftp = new CTftp(srcName);
            try {
                ctftp.login(serverHost, serverUser, serverPassword);
            } catch (Exception e) {
                throw new IOException(
                        new String("Error logging into FTP server \"" + serverHost + "\":\n" + e.getMessage()));
            }
            ctw = ctftp; // upcast to CTWriter
            System.err.println("\tdata will be written to FTP server at " + serverHost);
        } else if (writeMode == CTWriteMode.HTTP) {
            // Don't send username/pw in HTTP mode since they will be unencrypted
            CThttp cthttp = new CThttp(srcName, "http://" + serverHost);
            ctw = cthttp; // upcast to CTWriter
            System.err.println("\tdata will be written to HTTP server at " + serverHost);
        } else if (writeMode == CTWriteMode.HTTPS) {
            CThttp cthttp = new CThttp(srcName, "https://" + serverHost);
            // Username/pw are optional for HTTPS mode; only use them if username is not empty
            if (!serverUser.isEmpty()) {
                try {
                    cthttp.login(serverUser, serverPassword);
                } catch (Exception e) {
                    throw new IOException(new String(
                            "Error logging into HTTP server \"" + serverHost + "\":\n" + e.getMessage()));
                }
            }
            ctw = cthttp; // upcast to CTWriter
            System.err.println("\tdata will be written to HTTPS server at " + serverHost);
        } else if (writeMode == CTWriteMode.UDP) {
            try {
                udpServerSocket = new DatagramSocket();
            } catch (SocketException se) {
                System.err.println("Error creating socket for UDP:\n" + se);
                System.exit(0);
            }
            try {
                udpServerAddress = InetAddress.getByName(udpHost);
            } catch (UnknownHostException uhe) {
                System.err.println("Error getting UDP server host address:\n" + uhe);
                System.exit(0);
            }
        }
        if (writeMode != CTWriteMode.UDP) {
            ctw.setBlockMode(blockPts > 1, blockPts > 1);
            ctw.autoFlush(0); // no autoflush
            ctw.autoSegment(1000);
        }

        // screen dims
        Dimension screenSize = Toolkit.getDefaultToolkit().getScreenSize();
        double width = screenSize.getWidth();
        double height = screenSize.getHeight();

        // use Map for consolidated putData
        Map<String, Object> cmap = new LinkedHashMap<String, Object>();

        // loop and write some output
        for (int i = 0; i < 1000000; i++) { // go until killed
            long currentTime = System.currentTimeMillis();
            Point mousePos = MouseInfo.getPointerInfo().getLocation();
            float x_pt = (float) (mousePos.getX() / width); // normalize
            float y_pt = (float) ((height - mousePos.getY()) / height); // flip Y (so bottom=0)
            if (writeMode != CTWriteMode.UDP) {
                // CT output mode
                ctw.setTime(currentTime);
                cmap.clear();
                cmap.put("x", x_pt);
                cmap.put("y", y_pt);
                ctw.putData(cmap);
                if (((i + 1) % blockPts) == 0) {
                    ctw.flush();
                    System.err.print(".");
                }
            } else {
                // UDP output mode
                // We force blockPts to be 1 for UDP output mode, i.e. we "flush" the data every time
                // Write the following data (21 bytes total):
                //     header = "MOUSE", 5 bytes
                //     current time, long, 8 bytes
                //     2 floats (x,y) 4 bytes each, 8 bytes
                int len = 21;
                ByteBuffer bb = ByteBuffer.allocate(len);
                String headerStr = "MOUSE";
                bb.put(headerStr.getBytes("UTF-8"));
                bb.putLong(currentTime);
                bb.putFloat(x_pt);
                bb.putFloat(y_pt);
                // Might be able to use the following, but not sure:
                //     byte[] sendData = bb.array();
                byte[] sendData = new byte[len];
                bb.position(0);
                bb.get(sendData, 0, len);
                DatagramPacket sendPacket = new DatagramPacket(sendData, sendData.length, udpServerAddress,
                        udpPort);
                try {
                    udpServerSocket.send(sendPacket);
                } catch (IOException e) {
                    System.err.println("Test server caught exception trying to send data to UDP client:\n" + e);
                }
                System.err.print(".");
            }
            try {
                Thread.sleep(sampInterval);
            } catch (Exception e) {
            }
            ;
        }
        if (writeMode != CTWriteMode.UDP) {
            ctw.flush(); // wrap up
        }
    } catch (Exception e) {
        System.err.println("CTmousetrack exception: " + e);
        e.printStackTrace();
    }
}

From source file:FTPClientExample.java

public static void main(String[] args) throws UnknownHostException {
    boolean storeFile = false, binaryTransfer = false, error = false, listFiles = false, listNames = false,
            hidden = false;//from www. j  a  v a2s  . c  o m
    boolean localActive = false, useEpsvWithIPv4 = false, feat = false, printHash = false;
    boolean mlst = false, mlsd = false;
    boolean lenient = false;
    long keepAliveTimeout = -1;
    int controlKeepAliveReplyTimeout = -1;
    int minParams = 5; // listings require 3 params
    String protocol = null; // SSL protocol
    String doCommand = null;
    String trustmgr = null;
    String proxyHost = null;
    int proxyPort = 80;
    String proxyUser = null;
    String proxyPassword = null;
    String username = null;
    String password = null;

    int base = 0;
    for (base = 0; base < args.length; base++) {
        if (args[base].equals("-s")) {
            storeFile = true;
        } else if (args[base].equals("-a")) {
            localActive = true;
        } else if (args[base].equals("-A")) {
            username = "anonymous";
            password = System.getProperty("user.name") + "@" + InetAddress.getLocalHost().getHostName();
        } else if (args[base].equals("-b")) {
            binaryTransfer = true;
        } else if (args[base].equals("-c")) {
            doCommand = args[++base];
            minParams = 3;
        } else if (args[base].equals("-d")) {
            mlsd = true;
            minParams = 3;
        } else if (args[base].equals("-e")) {
            useEpsvWithIPv4 = true;
        } else if (args[base].equals("-f")) {
            feat = true;
            minParams = 3;
        } else if (args[base].equals("-h")) {
            hidden = true;
        } else if (args[base].equals("-k")) {
            keepAliveTimeout = Long.parseLong(args[++base]);
        } else if (args[base].equals("-l")) {
            listFiles = true;
            minParams = 3;
        } else if (args[base].equals("-L")) {
            lenient = true;
        } else if (args[base].equals("-n")) {
            listNames = true;
            minParams = 3;
        } else if (args[base].equals("-p")) {
            protocol = args[++base];
        } else if (args[base].equals("-t")) {
            mlst = true;
            minParams = 3;
        } else if (args[base].equals("-w")) {
            controlKeepAliveReplyTimeout = Integer.parseInt(args[++base]);
        } else if (args[base].equals("-T")) {
            trustmgr = args[++base];
        } else if (args[base].equals("-PrH")) {
            proxyHost = args[++base];
            String parts[] = proxyHost.split(":");
            if (parts.length == 2) {
                proxyHost = parts[0];
                proxyPort = Integer.parseInt(parts[1]);
            }
        } else if (args[base].equals("-PrU")) {
            proxyUser = args[++base];
        } else if (args[base].equals("-PrP")) {
            proxyPassword = args[++base];
        } else if (args[base].equals("-#")) {
            printHash = true;
        } else {
            break;
        }
    }

    int remain = args.length - base;
    if (username != null) {
        minParams -= 2;
    }
    if (remain < minParams) // server, user, pass, remote, local [protocol]
    {
        System.err.println(USAGE);
        System.exit(1);
    }

    String server = args[base++];
    int port = 0;
    String parts[] = server.split(":");
    if (parts.length == 2) {
        server = parts[0];
        port = Integer.parseInt(parts[1]);
    }
    if (username == null) {
        username = args[base++];
        password = args[base++];
    }

    String remote = null;
    if (args.length - base > 0) {
        remote = args[base++];
    }

    String local = null;
    if (args.length - base > 0) {
        local = args[base++];
    }

    final FTPClient ftp;
    if (protocol == null) {
        if (proxyHost != null) {
            System.out.println("Using HTTP proxy server: " + proxyHost);
            ftp = new FTPHTTPClient(proxyHost, proxyPort, proxyUser, proxyPassword);
        } else {
            ftp = new FTPClient();
        }
    } else {
        FTPSClient ftps;
        if (protocol.equals("true")) {
            ftps = new FTPSClient(true);
        } else if (protocol.equals("false")) {
            ftps = new FTPSClient(false);
        } else {
            String prot[] = protocol.split(",");
            if (prot.length == 1) { // Just protocol
                ftps = new FTPSClient(protocol);
            } else { // protocol,true|false
                ftps = new FTPSClient(prot[0], Boolean.parseBoolean(prot[1]));
            }
        }
        ftp = ftps;
        if ("all".equals(trustmgr)) {
            ftps.setTrustManager(TrustManagerUtils.getAcceptAllTrustManager());
        } else if ("valid".equals(trustmgr)) {
            ftps.setTrustManager(TrustManagerUtils.getValidateServerCertificateTrustManager());
        } else if ("none".equals(trustmgr)) {
            ftps.setTrustManager(null);
        }
    }

    if (printHash) {
        ftp.setCopyStreamListener(createListener());
    }
    if (keepAliveTimeout >= 0) {
        ftp.setControlKeepAliveTimeout(keepAliveTimeout);
    }
    if (controlKeepAliveReplyTimeout >= 0) {
        ftp.setControlKeepAliveReplyTimeout(controlKeepAliveReplyTimeout);
    }
    ftp.setListHiddenFiles(hidden);

    // suppress login details
    ftp.addProtocolCommandListener(new PrintCommandListener(new PrintWriter(System.out), true));

    try {
        int reply;
        if (port > 0) {
            ftp.connect(server, port);
        } else {
            ftp.connect(server);
        }
        System.out.println("Connected to " + server + " on " + (port > 0 ? port : ftp.getDefaultPort()));

        // After connection attempt, you should check the reply code to verify
        // success.
        reply = ftp.getReplyCode();

        if (!FTPReply.isPositiveCompletion(reply)) {
            ftp.disconnect();
            System.err.println("FTP server refused connection.");
            System.exit(1);
        }
    } catch (IOException e) {
        if (ftp.isConnected()) {
            try {
                ftp.disconnect();
            } catch (IOException f) {
                // do nothing
            }
        }
        System.err.println("Could not connect to server.");
        e.printStackTrace();
        System.exit(1);
    }

    __main: try {
        if (!ftp.login(username, password)) {
            ftp.logout();
            error = true;
            break __main;
        }

        System.out.println("Remote system is " + ftp.getSystemType());

        if (binaryTransfer) {
            ftp.setFileType(FTP.BINARY_FILE_TYPE);
        } else {
            // in theory this should not be necessary as servers should default to ASCII
            // but they don't all do so - see NET-500
            ftp.setFileType(FTP.ASCII_FILE_TYPE);
        }

        // Use passive mode as default because most of us are
        // behind firewalls these days.
        if (localActive) {
            ftp.enterLocalActiveMode();
        } else {
            ftp.enterLocalPassiveMode();
        }

        ftp.setUseEPSVwithIPv4(useEpsvWithIPv4);

        if (storeFile) {
            InputStream input;

            input = new FileInputStream(local);

            ftp.storeFile(remote, input);

            input.close();
        } else if (listFiles) {
            if (lenient) {
                FTPClientConfig config = new FTPClientConfig();
                config.setLenientFutureDates(true);
                ftp.configure(config);
            }

            for (FTPFile f : ftp.listFiles(remote)) {
                System.out.println(f.getRawListing());
                System.out.println(f.toFormattedString());
            }
        } else if (mlsd) {
            for (FTPFile f : ftp.mlistDir(remote)) {
                System.out.println(f.getRawListing());
                System.out.println(f.toFormattedString());
            }
        } else if (mlst) {
            FTPFile f = ftp.mlistFile(remote);
            if (f != null) {
                System.out.println(f.toFormattedString());
            }
        } else if (listNames) {
            for (String s : ftp.listNames(remote)) {
                System.out.println(s);
            }
        } else if (feat) {
            // boolean feature check
            if (remote != null) { // See if the command is present
                if (ftp.hasFeature(remote)) {
                    System.out.println("Has feature: " + remote);
                } else {
                    if (FTPReply.isPositiveCompletion(ftp.getReplyCode())) {
                        System.out.println("FEAT " + remote + " was not detected");
                    } else {
                        System.out.println("Command failed: " + ftp.getReplyString());
                    }
                }

                // Strings feature check
                String[] features = ftp.featureValues(remote);
                if (features != null) {
                    for (String f : features) {
                        System.out.println("FEAT " + remote + "=" + f + ".");
                    }
                } else {
                    if (FTPReply.isPositiveCompletion(ftp.getReplyCode())) {
                        System.out.println("FEAT " + remote + " is not present");
                    } else {
                        System.out.println("Command failed: " + ftp.getReplyString());
                    }
                }
            } else {
                if (ftp.features()) {
                    //                        Command listener has already printed the output
                } else {
                    System.out.println("Failed: " + ftp.getReplyString());
                }
            }
        } else if (doCommand != null) {
            if (ftp.doCommand(doCommand, remote)) {
                //                  Command listener has already printed the output
                //                    for(String s : ftp.getReplyStrings()) {
                //                        System.out.println(s);
                //                    }
            } else {
                System.out.println("Failed: " + ftp.getReplyString());
            }
        } else {
            OutputStream output;

            output = new FileOutputStream(local);

            ftp.retrieveFile(remote, output);

            output.close();
        }

        ftp.noop(); // check that control connection is working OK

        ftp.logout();
    } catch (FTPConnectionClosedException e) {
        error = true;
        System.err.println("Server closed connection.");
        e.printStackTrace();
    } catch (IOException e) {
        error = true;
        e.printStackTrace();
    } finally {
        if (ftp.isConnected()) {
            try {
                ftp.disconnect();
            } catch (IOException f) {
                // do nothing
            }
        }
    }

    System.exit(error ? 1 : 0);
}

From source file:by.FTPClientExample.java

public static void main(String[] args) throws UnknownHostException {
    boolean storeFile = false, binaryTransfer = false, error = false, listFiles = false, listNames = false,
            hidden = false;/*w ww .  j a  v a  2 s.  c o  m*/
    boolean localActive = false, useEpsvWithIPv4 = false, feat = false, printHash = false;
    boolean mlst = false, mlsd = false;
    boolean lenient = false;
    long keepAliveTimeout = -1;
    int controlKeepAliveReplyTimeout = -1;
    int minParams = 5; // listings require 3 params
    String protocol = null; // SSL protocol
    String doCommand = null;
    String trustmgr = null;
    String proxyHost = null;
    int proxyPort = 80;
    String proxyUser = null;
    String proxyPassword = null;
    String username = null;
    String password = null;

    int base = 0;
    for (base = 0; base < args.length; base++) {
        if (args[base].equals("-s")) {
            storeFile = true;
        } else if (args[base].equals("-a")) {
            localActive = true;
        } else if (args[base].equals("-A")) {
            username = "anonymous";
            password = System.getProperty("user.name") + "@" + InetAddress.getLocalHost().getHostName();
        } else if (args[base].equals("-b")) {
            binaryTransfer = true;
        } else if (args[base].equals("-c")) {
            doCommand = args[++base];
            minParams = 3;
        } else if (args[base].equals("-d")) {
            mlsd = true;
            minParams = 3;
        } else if (args[base].equals("-e")) {
            useEpsvWithIPv4 = true;
        } else if (args[base].equals("-f")) {
            feat = true;
            minParams = 3;
        } else if (args[base].equals("-h")) {
            hidden = true;
        } else if (args[base].equals("-k")) {
            keepAliveTimeout = Long.parseLong(args[++base]);
        } else if (args[base].equals("-l")) {
            listFiles = true;
            minParams = 3;
        } else if (args[base].equals("-L")) {
            lenient = true;
        } else if (args[base].equals("-n")) {
            listNames = true;
            minParams = 3;
        } else if (args[base].equals("-p")) {
            protocol = args[++base];
        } else if (args[base].equals("-t")) {
            mlst = true;
            minParams = 3;
        } else if (args[base].equals("-w")) {
            controlKeepAliveReplyTimeout = Integer.parseInt(args[++base]);
        } else if (args[base].equals("-T")) {
            trustmgr = args[++base];
        } else if (args[base].equals("-PrH")) {
            proxyHost = args[++base];
            String parts[] = proxyHost.split(":");
            if (parts.length == 2) {
                proxyHost = parts[0];
                proxyPort = Integer.parseInt(parts[1]);
            }
        } else if (args[base].equals("-PrU")) {
            proxyUser = args[++base];
        } else if (args[base].equals("-PrP")) {
            proxyPassword = args[++base];
        } else if (args[base].equals("-#")) {
            printHash = true;
        } else {
            break;
        }
    }

    int remain = args.length - base;
    if (username != null) {
        minParams -= 2;
    }
    if (remain < minParams) // server, user, pass, remote, local [protocol]
    {
        System.err.println(USAGE);
        System.exit(1);
    }

    String server = args[base++];
    int port = 0;
    String parts[] = server.split(":");
    if (parts.length == 2) {
        server = parts[0];
        port = Integer.parseInt(parts[1]);
    }
    if (username == null) {
        username = args[base++];
        password = args[base++];
    }

    String remote = null;
    if (args.length - base > 0) {
        remote = args[base++];
    }

    String local = null;
    if (args.length - base > 0) {
        local = args[base++];
    }

    final FTPClient ftp;
    if (protocol == null) {
        if (proxyHost != null) {
            System.out.println("Using HTTP proxy server: " + proxyHost);
            ftp = new FTPHTTPClient(proxyHost, proxyPort, proxyUser, proxyPassword);
        } else {
            ftp = new FTPClient();
        }
    } else {
        FTPSClient ftps;
        if (protocol.equals("true")) {
            ftps = new FTPSClient(true);
        } else if (protocol.equals("false")) {
            ftps = new FTPSClient(false);
        } else {
            String prot[] = protocol.split(",");
            if (prot.length == 1) { // Just protocol
                ftps = new FTPSClient(protocol);
            } else { // protocol,true|false
                ftps = new FTPSClient(prot[0], Boolean.parseBoolean(prot[1]));
            }
        }
        ftp = ftps;
        if ("all".equals(trustmgr)) {
            ftps.setTrustManager(TrustManagerUtils.getAcceptAllTrustManager());
        } else if ("valid".equals(trustmgr)) {
            ftps.setTrustManager(TrustManagerUtils.getValidateServerCertificateTrustManager());
        } else if ("none".equals(trustmgr)) {
            ftps.setTrustManager(null);
        }
    }

    if (printHash) {
        ftp.setCopyStreamListener(createListener());
    }
    if (keepAliveTimeout >= 0) {
        ftp.setControlKeepAliveTimeout(keepAliveTimeout);
    }
    if (controlKeepAliveReplyTimeout >= 0) {
        ftp.setControlKeepAliveReplyTimeout(controlKeepAliveReplyTimeout);
    }
    ftp.setListHiddenFiles(hidden);

    // suppress login details
    ftp.addProtocolCommandListener(new PrintCommandListener(new PrintWriter(System.out), true));

    try {
        int reply;
        if (port > 0) {
            System.out.println(server + ":" + port);
            ftp.connect(server, port);
        } else {
            ftp.connect(server);
        }
        System.out.println("Connected to " + server + " on " + (port > 0 ? port : ftp.getDefaultPort()));

        // After connection attempt, you should check the reply code to verify
        // success.
        reply = ftp.getReplyCode();

        if (!FTPReply.isPositiveCompletion(reply)) {
            ftp.disconnect();
            System.err.println("FTP server refused connection.");
            System.exit(1);
        }
    } catch (IOException e) {
        if (ftp.isConnected()) {
            try {
                ftp.disconnect();
            } catch (IOException f) {
                // do nothing
            }
        }
        System.err.println("Could not connect to server.");
        e.printStackTrace();
        System.exit(1);
    }

    __main: try {
        System.out.println("???" + username + "," + password);
        if (!ftp.login(username, password)) {
            ftp.logout();
            error = true;
            break __main;
        }

        System.out.println("Remote system is " + ftp.getSystemType());

        if (binaryTransfer) {
            ftp.setFileType(FTP.BINARY_FILE_TYPE);
        } else {
            // in theory this should not be necessary as servers should default to ASCII
            // but they don't all do so - see NET-500
            ftp.setFileType(FTP.ASCII_FILE_TYPE);
        }

        // Use passive mode as default because most of us are
        // behind firewalls these days.
        if (localActive) {
            ftp.enterLocalActiveMode();
        } else {
            ftp.enterLocalPassiveMode();
        }

        ftp.setUseEPSVwithIPv4(useEpsvWithIPv4);

        if (storeFile) {
            InputStream input;

            input = new FileInputStream(local);

            ftp.storeFile(remote, input);

            input.close();
        } else if (listFiles) {
            if (lenient) {
                FTPClientConfig config = new FTPClientConfig();
                config.setLenientFutureDates(true);
                ftp.configure(config);
            }

            for (FTPFile f : ftp.listFiles(remote)) {
                System.out.println(f.getRawListing());
                System.out.println(f.toFormattedString());
            }
        } else if (mlsd) {
            for (FTPFile f : ftp.mlistDir(remote)) {
                System.out.println(f.getRawListing());
                System.out.println(f.toFormattedString());
            }
        } else if (mlst) {
            FTPFile f = ftp.mlistFile(remote);
            if (f != null) {
                System.out.println(f.toFormattedString());
            }
        } else if (listNames) {
            for (String s : ftp.listNames(remote)) {
                System.out.println(s);
            }
        } else if (feat) {
            // boolean feature check
            if (remote != null) { // See if the command is present
                if (ftp.hasFeature(remote)) {
                    System.out.println("Has feature: " + remote);
                } else {
                    if (FTPReply.isPositiveCompletion(ftp.getReplyCode())) {
                        System.out.println("FEAT " + remote + " was not detected");
                    } else {
                        System.out.println("Command failed: " + ftp.getReplyString());
                    }
                }

                // Strings feature check
                String[] features = ftp.featureValues(remote);
                if (features != null) {
                    for (String f : features) {
                        System.out.println("FEAT " + remote + "=" + f + ".");
                    }
                } else {
                    if (FTPReply.isPositiveCompletion(ftp.getReplyCode())) {
                        System.out.println("FEAT " + remote + " is not present");
                    } else {
                        System.out.println("Command failed: " + ftp.getReplyString());
                    }
                }
            } else {
                if (ftp.features()) {
                    //                        Command listener has already printed the output
                } else {
                    System.out.println("Failed: " + ftp.getReplyString());
                }
            }
        } else if (doCommand != null) {
            if (ftp.doCommand(doCommand, remote)) {
                //                  Command listener has already printed the output
                //                    for(String s : ftp.getReplyStrings()) {
                //                        System.out.println(s);
                //                    }
            } else {
                System.out.println("Failed: " + ftp.getReplyString());
            }
        } else {
            OutputStream output;

            output = new FileOutputStream(local);

            ftp.retrieveFile(remote, output);

            output.close();
        }

        ftp.noop(); // check that control connection is working OK

        ftp.logout();
    } catch (FTPConnectionClosedException e) {
        error = true;
        System.err.println("Server closed connection.");
        e.printStackTrace();
    } catch (IOException e) {
        error = true;
        e.printStackTrace();
    } finally {
        if (ftp.isConnected()) {
            try {
                ftp.disconnect();
            } catch (IOException f) {
                // do nothing
            }
        }
    }

    System.exit(error ? 1 : 0);
}

From source file:ddc.commons.ftp.FTPClientExample.java

public static void main(String[] args) throws UnknownHostException {
    boolean storeFile = false, binaryTransfer = false, error = false, listFiles = false, listNames = false,
            hidden = false;// www  .  ja  v  a 2 s. c  o m
    boolean localActive = false, useEpsvWithIPv4 = false, feat = false, printHash = false;
    boolean mlst = false, mlsd = false;
    boolean lenient = false;
    long keepAliveTimeout = -1;
    int controlKeepAliveReplyTimeout = -1;
    int minParams = 5; // listings require 3 params
    String protocol = null; // SSL protocol
    String doCommand = null;
    String trustmgr = null;
    String proxyHost = null;
    int proxyPort = 80;
    String proxyUser = null;
    String proxyPassword = null;
    String username = null;
    String password = null;

    int base = 0;
    for (base = 0; base < args.length; base++) {
        if (args[base].equals("-s")) {
            storeFile = true;
        } else if (args[base].equals("-a")) {
            localActive = true;
        } else if (args[base].equals("-A")) {
            username = "anonymous";
            password = System.getProperty("user.name") + "@" + InetAddress.getLocalHost().getHostName();
        } else if (args[base].equals("-b")) {
            binaryTransfer = true;
        } else if (args[base].equals("-c")) {
            doCommand = args[++base];
            minParams = 3;
        } else if (args[base].equals("-d")) {
            mlsd = true;
            minParams = 3;
        } else if (args[base].equals("-e")) {
            useEpsvWithIPv4 = true;
        } else if (args[base].equals("-f")) {
            feat = true;
            minParams = 3;
        } else if (args[base].equals("-h")) {
            hidden = true;
        } else if (args[base].equals("-k")) {
            keepAliveTimeout = Long.parseLong(args[++base]);
        } else if (args[base].equals("-l")) {
            listFiles = true;
            minParams = 3;
        } else if (args[base].equals("-L")) {
            lenient = true;
        } else if (args[base].equals("-n")) {
            listNames = true;
            minParams = 3;
        } else if (args[base].equals("-p")) {
            protocol = args[++base];
        } else if (args[base].equals("-t")) {
            mlst = true;
            minParams = 3;
        } else if (args[base].equals("-w")) {
            controlKeepAliveReplyTimeout = Integer.parseInt(args[++base]);
        } else if (args[base].equals("-T")) {
            trustmgr = args[++base];
        } else if (args[base].equals("-PrH")) {
            proxyHost = args[++base];
            String parts[] = StringUtils.split(proxyHost, ':');
            if (parts.length == 2) {
                proxyHost = parts[0];
                proxyPort = Integer.parseInt(parts[1]);
            }
        } else if (args[base].equals("-PrU")) {
            proxyUser = args[++base];
        } else if (args[base].equals("-PrP")) {
            proxyPassword = args[++base];
        } else if (args[base].equals("-#")) {
            printHash = true;
        } else {
            break;
        }
    }

    int remain = args.length - base;
    if (username != null) {
        minParams -= 2;
    }
    if (remain < minParams) // server, user, pass, remote, local [protocol]
    {
        System.err.println(USAGE);
        System.exit(1);
    }

    String server = args[base++];
    int port = 0;
    String parts[] = server.split(":");
    if (parts.length == 2) {
        server = parts[0];
        port = Integer.parseInt(parts[1]);
    }
    if (username == null) {
        username = args[base++];
        password = args[base++];
    }

    String remote = null;
    if (args.length - base > 0) {
        remote = args[base++];
    }

    String local = null;
    if (args.length - base > 0) {
        local = args[base++];
    }

    final FTPClient ftp;
    if (protocol == null) {
        if (proxyHost != null) {
            System.out.println("Using HTTP proxy server: " + proxyHost);
            ftp = new FTPHTTPClient(proxyHost, proxyPort, proxyUser, proxyPassword);
        } else {
            ftp = new FTPClient();
        }
    } else {
        FTPSClient ftps;
        if (protocol.equals("true")) {
            ftps = new FTPSClient(true);
        } else if (protocol.equals("false")) {
            ftps = new FTPSClient(false);
        } else {
            String prot[] = protocol.split(",");
            if (prot.length == 1) { // Just protocol
                ftps = new FTPSClient(protocol);
            } else { // protocol,true|false
                ftps = new FTPSClient(prot[0], Boolean.parseBoolean(prot[1]));
            }
        }
        ftp = ftps;
        if ("all".equals(trustmgr)) {
            ftps.setTrustManager(TrustManagerUtils.getAcceptAllTrustManager());
        } else if ("valid".equals(trustmgr)) {
            ftps.setTrustManager(TrustManagerUtils.getValidateServerCertificateTrustManager());
        } else if ("none".equals(trustmgr)) {
            ftps.setTrustManager(null);
        }
    }

    if (printHash) {
        ftp.setCopyStreamListener(createListener());
    }
    if (keepAliveTimeout >= 0) {
        ftp.setControlKeepAliveTimeout(keepAliveTimeout);
    }
    if (controlKeepAliveReplyTimeout >= 0) {
        ftp.setControlKeepAliveReplyTimeout(controlKeepAliveReplyTimeout);
    }
    ftp.setListHiddenFiles(hidden);

    // suppress login details
    ftp.addProtocolCommandListener(new PrintCommandListener(new PrintWriter(System.out), true));

    try {
        int reply;
        if (port > 0) {
            ftp.connect(server, port);
        } else {
            ftp.connect(server);
        }
        System.out.println("Connected to " + server + " on " + (port > 0 ? port : ftp.getDefaultPort()));

        // After connection attempt, you should check the reply code to verify
        // success.
        reply = ftp.getReplyCode();

        if (!FTPReply.isPositiveCompletion(reply)) {
            ftp.disconnect();
            System.err.println("FTP server refused connection.");
            System.exit(1);
        }
    } catch (IOException e) {
        if (ftp.isConnected()) {
            try {
                ftp.disconnect();
            } catch (IOException f) {
                // do nothing
            }
        }
        System.err.println("Could not connect to server.");
        e.printStackTrace();
        System.exit(1);
    }

    __main: try {
        if (!ftp.login(username, password)) {
            ftp.logout();
            error = true;
            break __main;
        }

        System.out.println("Remote system is " + ftp.getSystemType());

        if (binaryTransfer) {
            ftp.setFileType(FTP.BINARY_FILE_TYPE);
        } else {
            // in theory this should not be necessary as servers should default to ASCII
            // but they don't all do so - see NET-500
            ftp.setFileType(FTP.ASCII_FILE_TYPE);
        }

        // Use passive mode as default because most of us are
        // behind firewalls these days.
        if (localActive) {
            ftp.enterLocalActiveMode();
        } else {
            ftp.enterLocalPassiveMode();
        }

        ftp.setUseEPSVwithIPv4(useEpsvWithIPv4);

        if (storeFile) {
            InputStream input;

            input = new FileInputStream(local);

            ftp.storeFile(remote, input);

            input.close();
        } else if (listFiles) {
            if (lenient) {
                FTPClientConfig config = new FTPClientConfig();
                config.setLenientFutureDates(true);
                ftp.configure(config);
            }

            for (FTPFile f : ftp.listFiles(remote)) {
                System.out.println(f.getRawListing());
                System.out.println(f.toFormattedString());
            }
        } else if (mlsd) {
            for (FTPFile f : ftp.mlistDir(remote)) {
                System.out.println(f.getRawListing());
                System.out.println(f.toFormattedString());
            }
        } else if (mlst) {
            FTPFile f = ftp.mlistFile(remote);
            if (f != null) {
                System.out.println(f.toFormattedString());
            }
        } else if (listNames) {
            for (String s : ftp.listNames(remote)) {
                System.out.println(s);
            }
        } else if (feat) {
            // boolean feature check
            if (remote != null) { // See if the command is present
                if (ftp.hasFeature(remote)) {
                    System.out.println("Has feature: " + remote);
                } else {
                    if (FTPReply.isPositiveCompletion(ftp.getReplyCode())) {
                        System.out.println("FEAT " + remote + " was not detected");
                    } else {
                        System.out.println("Command failed: " + ftp.getReplyString());
                    }
                }

                // Strings feature check
                String[] features = ftp.featureValues(remote);
                if (features != null) {
                    for (String f : features) {
                        System.out.println("FEAT " + remote + "=" + f + ".");
                    }
                } else {
                    if (FTPReply.isPositiveCompletion(ftp.getReplyCode())) {
                        System.out.println("FEAT " + remote + " is not present");
                    } else {
                        System.out.println("Command failed: " + ftp.getReplyString());
                    }
                }
            } else {
                if (ftp.features()) {
                    //                        Command listener has already printed the output
                } else {
                    System.out.println("Failed: " + ftp.getReplyString());
                }
            }
        } else if (doCommand != null) {
            if (ftp.doCommand(doCommand, remote)) {
                //                  Command listener has already printed the output
                //                    for(String s : ftp.getReplyStrings()) {
                //                        System.out.println(s);
                //                    }
            } else {
                System.out.println("Failed: " + ftp.getReplyString());
            }
        } else {
            OutputStream output;

            output = new FileOutputStream(local);

            ftp.retrieveFile(remote, output);

            output.close();
        }

        ftp.noop(); // check that control connection is working OK

        ftp.logout();
    } catch (FTPConnectionClosedException e) {
        error = true;
        System.err.println("Server closed connection.");
        e.printStackTrace();
    } catch (IOException e) {
        error = true;
        e.printStackTrace();
    } finally {
        if (ftp.isConnected()) {
            try {
                ftp.disconnect();
            } catch (IOException f) {
                // do nothing
            }
        }
    }

    System.exit(error ? 1 : 0);
}

From source file:cc.twittertools.index.IndexStatuses.java

@SuppressWarnings("static-access")
public static void main(String[] args) throws Exception {
    Options options = new Options();

    options.addOption(new Option(HELP_OPTION, "show help"));
    options.addOption(new Option(OPTIMIZE_OPTION, "merge indexes into a single segment"));
    options.addOption(new Option(STORE_TERM_VECTORS_OPTION, "store term vectors"));

    options.addOption(OptionBuilder.withArgName("dir").hasArg().withDescription("source collection directory")
            .create(COLLECTION_OPTION));
    options.addOption(//from w  w w  .  j  av  a 2s . c om
            OptionBuilder.withArgName("dir").hasArg().withDescription("index location").create(INDEX_OPTION));
    options.addOption(OptionBuilder.withArgName("file").hasArg().withDescription("file with deleted tweetids")
            .create(DELETES_OPTION));
    options.addOption(OptionBuilder.withArgName("id").hasArg().withDescription("max id").create(MAX_ID_OPTION));

    CommandLine cmdline = null;
    CommandLineParser parser = new GnuParser();
    try {
        cmdline = parser.parse(options, args);
    } catch (ParseException exp) {
        System.err.println("Error parsing command line: " + exp.getMessage());
        System.exit(-1);
    }

    if (cmdline.hasOption(HELP_OPTION) || !cmdline.hasOption(COLLECTION_OPTION)
            || !cmdline.hasOption(INDEX_OPTION)) {
        HelpFormatter formatter = new HelpFormatter();
        formatter.printHelp(IndexStatuses.class.getName(), options);
        System.exit(-1);
    }

    String collectionPath = cmdline.getOptionValue(COLLECTION_OPTION);
    String indexPath = cmdline.getOptionValue(INDEX_OPTION);

    final FieldType textOptions = new FieldType();
    textOptions.setIndexed(true);
    textOptions.setIndexOptions(IndexOptions.DOCS_AND_FREQS_AND_POSITIONS);
    textOptions.setStored(true);
    textOptions.setTokenized(true);
    if (cmdline.hasOption(STORE_TERM_VECTORS_OPTION)) {
        textOptions.setStoreTermVectors(true);
    }

    LOG.info("collection: " + collectionPath);
    LOG.info("index: " + indexPath);

    LongOpenHashSet deletes = null;
    if (cmdline.hasOption(DELETES_OPTION)) {
        deletes = new LongOpenHashSet();
        File deletesFile = new File(cmdline.getOptionValue(DELETES_OPTION));
        if (!deletesFile.exists()) {
            System.err.println("Error: " + deletesFile + " does not exist!");
            System.exit(-1);
        }
        LOG.info("Reading deletes from " + deletesFile);

        FileInputStream fin = new FileInputStream(deletesFile);
        byte[] ignoreBytes = new byte[2];
        fin.read(ignoreBytes); // "B", "Z" bytes from commandline tools
        BufferedReader br = new BufferedReader(new InputStreamReader(new CBZip2InputStream(fin)));

        String s;
        while ((s = br.readLine()) != null) {
            if (s.contains("\t")) {
                deletes.add(Long.parseLong(s.split("\t")[0]));
            } else {
                deletes.add(Long.parseLong(s));
            }
        }
        br.close();
        fin.close();
        LOG.info("Read " + deletes.size() + " tweetids from deletes file.");
    }

    long maxId = Long.MAX_VALUE;
    if (cmdline.hasOption(MAX_ID_OPTION)) {
        maxId = Long.parseLong(cmdline.getOptionValue(MAX_ID_OPTION));
        LOG.info("index: " + maxId);
    }

    long startTime = System.currentTimeMillis();
    File file = new File(collectionPath);
    if (!file.exists()) {
        System.err.println("Error: " + file + " does not exist!");
        System.exit(-1);
    }

    StatusStream stream = new JsonStatusCorpusReader(file);

    Directory dir = FSDirectory.open(new File(indexPath));
    IndexWriterConfig config = new IndexWriterConfig(Version.LUCENE_43, IndexStatuses.ANALYZER);
    config.setOpenMode(OpenMode.CREATE);

    IndexWriter writer = new IndexWriter(dir, config);
    int cnt = 0;
    Status status;
    try {
        while ((status = stream.next()) != null) {
            if (status.getText() == null) {
                continue;
            }

            // Skip deletes tweetids.
            if (deletes != null && deletes.contains(status.getId())) {
                continue;
            }

            if (status.getId() > maxId) {
                continue;
            }

            cnt++;
            Document doc = new Document();
            doc.add(new LongField(StatusField.ID.name, status.getId(), Field.Store.YES));
            doc.add(new LongField(StatusField.EPOCH.name, status.getEpoch(), Field.Store.YES));
            doc.add(new TextField(StatusField.SCREEN_NAME.name, status.getScreenname(), Store.YES));

            doc.add(new Field(StatusField.TEXT.name, status.getText(), textOptions));

            doc.add(new IntField(StatusField.FRIENDS_COUNT.name, status.getFollowersCount(), Store.YES));
            doc.add(new IntField(StatusField.FOLLOWERS_COUNT.name, status.getFriendsCount(), Store.YES));
            doc.add(new IntField(StatusField.STATUSES_COUNT.name, status.getStatusesCount(), Store.YES));

            long inReplyToStatusId = status.getInReplyToStatusId();
            if (inReplyToStatusId > 0) {
                doc.add(new LongField(StatusField.IN_REPLY_TO_STATUS_ID.name, inReplyToStatusId,
                        Field.Store.YES));
                doc.add(new LongField(StatusField.IN_REPLY_TO_USER_ID.name, status.getInReplyToUserId(),
                        Field.Store.YES));
            }

            String lang = status.getLang();
            if (!lang.equals("unknown")) {
                doc.add(new TextField(StatusField.LANG.name, status.getLang(), Store.YES));
            }

            long retweetStatusId = status.getRetweetedStatusId();
            if (retweetStatusId > 0) {
                doc.add(new LongField(StatusField.RETWEETED_STATUS_ID.name, retweetStatusId, Field.Store.YES));
                doc.add(new LongField(StatusField.RETWEETED_USER_ID.name, status.getRetweetedUserId(),
                        Field.Store.YES));
                doc.add(new IntField(StatusField.RETWEET_COUNT.name, status.getRetweetCount(), Store.YES));
                if (status.getRetweetCount() < 0 || status.getRetweetedStatusId() < 0) {
                    LOG.warn("Error parsing retweet fields of " + status.getId());
                }
            }

            writer.addDocument(doc);
            if (cnt % 100000 == 0) {
                LOG.info(cnt + " statuses indexed");
            }
        }

        LOG.info(String.format("Total of %s statuses added", cnt));

        if (cmdline.hasOption(OPTIMIZE_OPTION)) {
            LOG.info("Merging segments...");
            writer.forceMerge(1);
            LOG.info("Done!");
        }

        LOG.info("Total elapsed time: " + (System.currentTimeMillis() - startTime) + "ms");
    } catch (Exception e) {
        e.printStackTrace();
    } finally {
        writer.close();
        dir.close();
        stream.close();
    }
}