Example usage for java.io Serializable toString

List of usage examples for java.io Serializable toString

  1. HOME
  2. Java
  3. java
  4. java.io.*
  5. Serializable
  6. toString

Introduction

In this page you can find the example usage for java.io Serializable toString.

Prototype

public String toString()

Source Link

Document

Returns a string representation of the object.

Usage

From source file:org.sakaiproject.genericdao.hibernate.HibernateGenericDao.java

public void update(Object object) {
    Class<?> type = findClass(object);
    checkClass(type);//from  ww  w .j a  va  2  s .c  om

    Serializable idValue = baseGetIdValue(object);
    if (idValue == null) {
        throw new IllegalArgumentException(
                "Could not get an id value from the supplied object, cannot update without an id: " + object);
    }

    String operation = "update";
    beforeWrite(operation, type, new Serializable[] { idValue }, new Object[] { object });

    baseUpdate(type, idValue, object);

    // clear the search caches
    getCacheProvider().clear(getSearchCacheName(type));
    // clear the cache entry since this was updated
    String key = idValue.toString();
    String cacheName = getCacheName(type);
    getCacheProvider().remove(cacheName, key);

    afterWrite(operation, type, new Serializable[] { idValue }, new Object[] { object }, 1);
}

From source file:i5.las2peer.services.gamificationApplicationService.GamificationApplicationService.java

/**
 * Validate member and add to the database as the new member if he/she is not registered yet
 * @return HttpResponse status if validation success
 *//*from ww w. jav a2s. c o m*/
@POST
@Path("/validation")
@Produces(MediaType.APPLICATION_JSON)
@ApiOperation(value = "memberLoginValidation", notes = "Simple function to validate a member login.")
@ApiResponses(value = { @ApiResponse(code = HttpURLConnection.HTTP_OK, message = "Member is registered"),
        @ApiResponse(code = HttpURLConnection.HTTP_UNAUTHORIZED, message = "Unauthorized"),
        @ApiResponse(code = HttpURLConnection.HTTP_BAD_REQUEST, message = "User data error to be retrieved"),
        @ApiResponse(code = HttpURLConnection.HTTP_INTERNAL_ERROR, message = "Cannot connect to database"),
        @ApiResponse(code = HttpURLConnection.HTTP_INTERNAL_ERROR, message = "User data error to be retrieved. Not JSON object") })
public HttpResponse memberLoginValidation() {
    // Request log
    L2pLogger.logEvent(this, Event.SERVICE_CUSTOM_MESSAGE_99, "POST " + "gamification/applications/validation");

    JSONObject objResponse = new JSONObject();

    MemberModel member;
    Connection conn = null;

    UserAgent userAgent = (UserAgent) getContext().getMainAgent();
    // take username as default name
    String name = userAgent.getLoginName();
    System.out.println("User name : " + name);
    if (name.equals("anonymous")) {
        return unauthorizedMessage();
    }
    // try to fetch firstname/lastname from user data received from OpenID
    Serializable userData = userAgent.getUserData();

    if (userData != null) {
        Object jsonUserData = JSONValue.parse(userData.toString());
        if (jsonUserData instanceof JSONObject) {
            JSONObject obj = (JSONObject) jsonUserData;
            Object firstnameObj = obj.get("given_name");
            Object lastnameObj = obj.get("family_name");
            Object emailObj = obj.get("email");
            String firstname, lastname, email;
            if (firstnameObj != null) {
                firstname = ((String) firstnameObj);
            } else {
                firstname = "";
            }

            if (lastnameObj != null) {
                lastname = ((String) lastnameObj);
            } else {
                lastname = "";
            }

            if (emailObj != null) {
                email = ((String) emailObj);
            } else {
                email = "";
            }

            member = new MemberModel(name, firstname, lastname, email);
            //logger.info(member.getId()+" "+member.getFullName()+" "+member.getEmail());
            try {
                conn = dbm.getConnection();
                if (!applicationAccess.isMemberRegistered(conn, member.getId())) {
                    applicationAccess.registerMember(conn, member);
                    objResponse.put("message", "Welcome " + member.getId() + "!");
                    L2pLogger.logEvent(Event.SERVICE_CUSTOM_MESSAGE_7, "" + member.getId());

                    return new HttpResponse(objResponse.toJSONString(), HttpURLConnection.HTTP_OK);
                }
            } catch (SQLException e) {
                e.printStackTrace();
                objResponse.put("message", "Cannot validate member login. Database Error. " + e.getMessage());
                L2pLogger.logEvent(this, Event.SERVICE_ERROR, (String) objResponse.get("message"));
                return new HttpResponse(objResponse.toJSONString(), HttpURLConnection.HTTP_INTERNAL_ERROR);
            }
            // always close connections
            finally {
                try {
                    conn.close();
                } catch (SQLException e) {
                    logger.printStackTrace(e);
                }
            }
        } else {
            //logger.warning("Parsing user data failed! Got '" + jsonUserData.getClass().getName() + " instead of "+ JSONObject.class.getName() + " expected!");
            objResponse.put("message",
                    "Cannot validate member login. User data error to be retrieved. Not JSON object.");
            L2pLogger.logEvent(this, Event.SERVICE_ERROR, (String) objResponse.get("message"));
            return new HttpResponse(objResponse.toJSONString(), HttpURLConnection.HTTP_INTERNAL_ERROR);
        }
        objResponse.put("message", "Member already registered");
        L2pLogger.logEvent(Event.SERVICE_CUSTOM_MESSAGE_8, "" + member.getId());

        return new HttpResponse(objResponse.toJSONString(), HttpURLConnection.HTTP_OK);
    } else {
        objResponse.put("message", "Cannot validate member login. User data error to be retrieved.");
        L2pLogger.logEvent(this, Event.SERVICE_ERROR, (String) objResponse.get("message"));
        return new HttpResponse(objResponse.toJSONString(), HttpURLConnection.HTTP_BAD_REQUEST);
    }

}

From source file:org.alfresco.repo.virtual.bundle.VirtualNodeServiceExtension.java

@Override
public ChildAssociationRef getPrimaryParent(NodeRef nodeRef) {
    if (Reference.isReference(nodeRef)) {
        Reference reference = Reference.fromNodeRef(nodeRef);
        Reference parent = reference.execute(new GetParentReferenceMethod());
        if (parent == null) {
            return getTrait().getPrimaryParent(reference.execute(new GetActualNodeRefMethod(environment)));
        } else {/*w  w  w. j  a  v  a  2  s . c  om*/
            Reference parentsParent = parent.execute(new GetParentReferenceMethod());

            NodeRef parentNodeRef = parent.toNodeRef();
            if (parentsParent == null) {
                parentNodeRef = parent.execute(new GetActualNodeRefMethod(environment));

            }

            NodeRef referenceNodeRef = reference.toNodeRef();
            Map<QName, Serializable> refProperties = smartStore.getProperties(reference);
            Serializable childName = refProperties.get(ContentModel.PROP_NAME);
            QName childAssocQName = QName.createQNameWithValidLocalName(
                    VirtualContentModel.VIRTUAL_CONTENT_MODEL_1_0_URI, childName.toString());
            ChildAssociationRef assoc = new ChildAssociationRef(ContentModel.ASSOC_CONTAINS, parentNodeRef,
                    childAssocQName, referenceNodeRef, true, -1);
            return assoc;
        }
    } else {
        return getTrait().getPrimaryParent(nodeRef);
    }
}

From source file:org.apache.jcs.engine.memory.lru.LRUMemoryCache.java

/**
 * Removes an item from the cache. This method handles hierarchical removal. If the key is a
 * String and ends with the CacheConstants.NAME_COMPONENT_DELIMITER, then all items with keys
 * starting with the argument String will be removed.
 * <p>//from  w  ww. j ava2s.  co m
 * @param key
 * @return true if the removal was successful
 * @exception IOException
 */
public synchronized boolean remove(Serializable key) throws IOException {
    if (log.isDebugEnabled()) {
        log.debug("removing item for key: " + key);
    }

    boolean removed = false;

    // handle partial removal
    if (key instanceof String && ((String) key).endsWith(CacheConstants.NAME_COMPONENT_DELIMITER)) {
        // remove all keys of the same name hierarchy.
        synchronized (map) {
            for (Iterator itr = map.entrySet().iterator(); itr.hasNext();) {
                Map.Entry entry = (Map.Entry) itr.next();
                Object k = entry.getKey();

                if (k instanceof String && ((String) k).startsWith(key.toString())) {
                    list.remove((MemoryElementDescriptor) entry.getValue());

                    itr.remove();

                    removed = true;
                }
            }
        }
    } else if (key instanceof GroupId) {
        // remove all keys of the same name hierarchy.
        synchronized (map) {
            for (Iterator itr = map.entrySet().iterator(); itr.hasNext();) {
                Map.Entry entry = (Map.Entry) itr.next();
                Object k = entry.getKey();

                if (k instanceof GroupAttrName && ((GroupAttrName) k).groupId.equals(key)) {
                    itr.remove();

                    list.remove((MemoryElementDescriptor) entry.getValue());

                    removed = true;
                }
            }
        }
    } else {
        // remove single item.
        MemoryElementDescriptor me = (MemoryElementDescriptor) map.remove(key);

        if (me != null) {
            list.remove(me);
            removed = true;
        }
    }

    return removed;
}

From source file:org.alfresco.repo.virtual.bundle.VirtualNodeServiceExtension.java

@Override
public List<ChildAssociationRef> getParentAssocs(NodeRef nodeRef, QNamePattern typeQNamePattern,
        QNamePattern qnamePattern) {/*from   w w  w.j  av a  2  s  .c  o m*/
    NodeServiceTrait theTrait = getTrait();
    if (Reference.isReference(nodeRef)) {
        Reference reference = Reference.fromNodeRef(nodeRef);
        Reference parent = reference.execute(new GetParentReferenceMethod());
        if (parent == null) {
            return theTrait.getParentAssocs(reference.execute(new GetActualNodeRefMethod(environment)),
                    typeQNamePattern, qnamePattern);
        } else {
            if (typeQNamePattern.isMatch(ContentModel.ASSOC_CONTAINS)) {
                Reference parentsParent = parent.execute(new GetParentReferenceMethod());

                NodeRef parentNodeRef = parent.toNodeRef();
                if (parentsParent == null) {
                    parentNodeRef = parent.execute(new GetActualNodeRefMethod(environment));

                }

                NodeRef referenceNodeRef = reference.toNodeRef();
                Map<QName, Serializable> properties = smartStore.getProperties(reference);
                Serializable name = properties.get(ContentModel.PROP_NAME);
                QName assocChildName = QName.createQNameWithValidLocalName(
                        VirtualContentModel.VIRTUAL_CONTENT_MODEL_1_0_URI, name.toString());
                if (qnamePattern.isMatch(assocChildName)) {
                    ChildAssociationRef assoc = new ChildAssociationRef(ContentModel.ASSOC_CONTAINS,
                            parentNodeRef, assocChildName, referenceNodeRef);
                    return Arrays.asList(assoc);
                } else {
                    return Collections.emptyList();
                }
            } else {
                return Collections.emptyList();
            }
        }
    } else {
        return theTrait.getParentAssocs(nodeRef, typeQNamePattern, qnamePattern);
    }
}

From source file:gsn.storage.StorageManager.java

public void executeInsert(CharSequence tableName, DataField[] fields, StreamElement streamElement,
        Connection connection) throws SQLException {
    PreparedStatement ps = null;/*from  w ww .j  av a2  s .co m*/
    String query = getStatementInsert(tableName, fields).toString();
    try {
        ps = connection.prepareStatement(query);
        int counter = 1;
        for (DataField dataField : fields) {
            if (dataField.getName().equalsIgnoreCase("timed"))
                continue;
            Serializable value = streamElement.getData(dataField.getName());

            switch (dataField.getDataTypeID()) {
            case DataTypes.VARCHAR:
                if (value == null)
                    ps.setNull(counter, Types.VARCHAR);
                else
                    ps.setString(counter, value.toString());
                break;
            case DataTypes.CHAR:
                if (value == null)
                    ps.setNull(counter, Types.CHAR);
                else
                    ps.setString(counter, value.toString());
                break;
            case DataTypes.INTEGER:
                if (value == null)
                    ps.setNull(counter, Types.INTEGER);
                else
                    ps.setInt(counter, ((Number) value).intValue());
                break;
            case DataTypes.SMALLINT:
                if (value == null)
                    ps.setNull(counter, Types.SMALLINT);
                else
                    ps.setShort(counter, ((Number) value).shortValue());
                break;
            case DataTypes.TINYINT:
                if (value == null)
                    ps.setNull(counter, Types.TINYINT);
                else
                    ps.setByte(counter, ((Number) value).byteValue());
                break;
            case DataTypes.DOUBLE:
                if (value == null)
                    ps.setNull(counter, Types.DOUBLE);
                else
                    ps.setDouble(counter, ((Number) value).doubleValue());
                break;
            case DataTypes.FLOAT:
                if (value == null)
                    ps.setNull(counter, Types.FLOAT);
                else
                    ps.setFloat(counter, ((Number) value).floatValue());
                break;
            case DataTypes.BIGINT:
                if (value == null)
                    ps.setNull(counter, Types.BIGINT);
                else
                    ps.setLong(counter, ((Number) value).longValue());
                break;
            case DataTypes.BINARY:
                if (value == null)
                    ps.setNull(counter, Types.BINARY);
                else
                    ps.setBytes(counter, (byte[]) value);
                break;
            default:
                logger.error("The type conversion is not supported for : " + dataField.getName() + "("
                        + dataField.getDataTypeID() + ") : ");
            }
            counter++;
        }
        ps.setLong(counter, streamElement.getTimeStamp());
        ps.execute();
    } catch (GSNRuntimeException e) {
        //if (e.getType() == GSNRuntimeException.UNEXPECTED_VIRTUAL_SENSOR_REMOVAL) {
        //    if (logger.isDebugEnabled())
        //        logger.debug("An stream element dropped due to unexpected virtual sensor removal. (Stream element: " + streamElement.toString() + ")+ Query: " + query, e);
        //} else
        logger.warn("Inserting a stream element failed : " + streamElement.toString(), e);
    } catch (SQLException e) {
        if (e.getMessage().toLowerCase().contains("duplicate entry"))
            logger.info("Error occurred on inserting data to the database, an stream element dropped due to: "
                    + e.getMessage() + ". (Stream element: " + streamElement.toString() + ")+ Query: " + query);
        else
            logger.warn("Error occurred on inserting data to the database, an stream element dropped due to: "
                    + e.getMessage() + ". (Stream element: " + streamElement.toString() + ")+ Query: " + query);
        throw e;
    } finally {
        close(ps);
    }
}

From source file:org.alfresco.repo.workflow.WorkflowReportServiceImpl.java

/**
 *
 * {@inheritDoc}// w  w w  .  j av a 2 s .c  o  m
 */
@Override
public Map<QName, Serializable> prepareTaskProperties(WorkflowTask task,
        Map<QName, Serializable> propertiesCurrent) {
    Map<QName, Serializable> taskProperties = new HashMap<QName, Serializable>();
    Set<Entry<QName, Serializable>> entrySet = propertiesCurrent.entrySet();

    if (DEBUG_ENABLED) {
        LOGGER.debug("Metadata of '" + task.getId() + "' is :" + propertiesCurrent);
    }
    if (propertiesCurrent.get(WorkflowModel.ASSOC_POOLED_ACTORS) instanceof Collection) {
        Collection<?> pooledActors = (Collection<?>) propertiesCurrent
                .remove(WorkflowModel.ASSOC_POOLED_ACTORS);
        // process if actually there is data
        if (pooledActors.size() > 0) {
            LinkedHashSet<String> pooledUsers = new LinkedHashSet<String>();
            LinkedHashSet<String> pooledGroups = new LinkedHashSet<String>();
            for (Object object : pooledActors) {
                String actorId = getActor(object).getSecond();
                AuthorityType authorityType = AuthorityType.getAuthorityType(actorId);
                if (authorityType == AuthorityType.GROUP) {
                    pooledGroups.add(actorId);
                } else if (authorityType == AuthorityType.USER) {
                    pooledUsers.add(actorId);
                }
            }
            taskProperties.put(WorkflowReportConstants.PROP_POOLED_GROUPS, pooledGroups);
            taskProperties.put(WorkflowReportConstants.PROP_POOLED_ACTORS, pooledUsers);
        }
    }
    if (propertiesCurrent.get(WorkflowModel.ASSOC_ASSIGNEES) instanceof Collection) {
        Collection<?> pooledActors = (Collection<?>) propertiesCurrent.get(WorkflowModel.ASSOC_ASSIGNEES);

        taskProperties.put(WorkflowModel.ASSOC_ASSIGNEES, (Serializable) pooledActors);
    }
    if (propertiesCurrent.get(WorkflowModel.ASSOC_GROUP_ASSIGNEE) != null) {
        String pooledGroup = propertiesCurrent.get(WorkflowModel.ASSOC_GROUP_ASSIGNEE).toString();
        String actorId = getActor(pooledGroup).getSecond();
        taskProperties.put(WorkflowModel.ASSOC_GROUP_ASSIGNEE, actorId);
    }
    for (Entry<QName, Serializable> entry : entrySet) {
        QName qName = entry.getKey();
        if (SKIPPED_DATA.contains(qName)) {
            continue;
        }
        if (StringUtils.isEmpty(qName.getNamespaceURI())) {
            continue;
        }
        if (UPDATED_DATA.containsKey(qName)) {
            QName qNameToUpdate = UPDATED_DATA.get(qName);
            if (qNameToUpdate != null) {
                taskProperties.put(qNameToUpdate, entry.getValue());
            } // else skip
        } else {
            taskProperties.put(qName, entry.getValue());
        }
    }
    taskProperties.put(ContentModel.PROP_NAME, task.getId());
    taskProperties.put(ContentModel.PROP_TITLE, task.getName());

    Serializable taskId = taskProperties.remove(WorkflowModel.PROP_TASK_ID);
    if (taskId != null) {
        taskId = taskId.toString().replaceAll("\\D?", "");
    }
    taskProperties.put(WorkflowModel.PROP_TASK_ID, taskId);
    if (!taskProperties.containsKey(WorkflowModel.PROP_OUTCOME)) {
        taskProperties.put(WorkflowModel.PROP_OUTCOME, "Not Yet Started");
    }
    taskProperties.put(CMFModel.PROP_WF_TASK_STATE, task.getState().toString());
    QName packageId = UPDATED_DATA.get(WorkflowModel.TYPE_PACKAGE);
    Object nodeRef = taskProperties.get(packageId);
    if (nodeRef != null && !nodeRef.toString().trim().isEmpty()) {
        NodeRef nodeRefCreated = new NodeRef(nodeRef.toString());
        if (nodeService.exists(nodeRefCreated)) {
            Pair<String, String> workflowItems = getWorkflowItems(nodeRefCreated, CMFModel.PROP_TYPE);
            taskProperties.put(CMFModel.PROP_WF_CONTEXT_TYPE, workflowItems.getFirst());
            taskProperties.put(CMFModel.PROP_WF_CONTEXT_ID, workflowItems.getSecond());
        }
    }

    WorkflowPath workflowPath = task.getPath();
    if (workflowPath == null) {
        // skip wf data
        return taskProperties;
    }

    WorkflowInstance instance = workflowPath.getInstance();
    taskProperties.put(WorkflowModel.PROP_WORKFLOW_DEFINITION_ID,
            workflowPath.getInstance().getDefinition().getId());

    taskProperties.put(WorkflowModel.PROP_WORKFLOW_DEFINITION_NAME, instance.getDefinition().getName());
    taskProperties.put(WorkflowModel.PROP_WORKFLOW_INSTANCE_ID, instance.getId());

    String definitionId = task.getDefinition().getNode().getName();
    if (definitionId != null) {
        taskProperties.put(CMFModel.PROP_TYPE, definitionId);
    }
    // fix priority if not set
    if (!propertiesCurrent.containsKey(WorkflowModel.PROP_PRIORITY)) {
        taskProperties.put(WorkflowModel.PROP_PRIORITY, workflowPath.getInstance().getPriority());
    } else {
        taskProperties.put(WorkflowModel.PROP_PRIORITY, propertiesCurrent.get(WorkflowModel.PROP_PRIORITY));
    }
    return taskProperties;
}

From source file:org.cbioportal.security.spring.CancerStudyPermissionEvaluator.java

/**
 * Implementation of {@code PermissionEvaluator}.
 *
 * @param authentication//  w ww  .jav a  2s  .  c om
 * @param targetId Serialized String cancer study id, 
 *   String molecular profile id, 
 *   String sample list id, 
 *   List<String> of cancer study ids, 
 *   List<String> of molecular profile ids,
 *   or List<String> of sample list ids
 * @param targetType String 'CancerStudy', 
 *   'MolecularProfile', 
 *   'SampleList',
 *   'List<CancerStudyId>', 
 *   'List<MolecularProfileId>', 
 *   'MolecularDataMultipleStudyFilter',
 *   'MolecularProfileFilter',
 *   'MutationMultipleStudyFilter',
 *   or 'List<SampleListId>'
 * @param permission
 */
@Override
public boolean hasPermission(Authentication authentication, Serializable targetId, String targetType,
        Object permission) {
    if (log.isDebugEnabled()) {
        log.debug("hasPermission(), checking permissions on targetId");
    }
    if (targetId == null) {
        if (log.isDebugEnabled()) {
            log.debug("hasPermission(), targetId is null, returning false");
        }
        return false;
    }

    if ("CancerStudy".equals(targetType)) {
        // everybody has access the 'all' cancer study
        // we have to check this right here (instead of checking later)
        // because the 'all' cancer study does not exist in the database
        if (targetId.toString().equalsIgnoreCase(ALL_CANCER_STUDIES_ID)) {
            return true;
        }
        CancerStudy cancerStudy = cancerStudies.get(targetId.toString());
        if (cancerStudy == null) {
            return false;
        }
        return hasPermission(authentication, cancerStudy, permission);
    } else if ("MolecularProfile".equals(targetType) || "GeneticProfile".equals(targetType)) {
        MolecularProfile molecularProfile = molecularProfiles.get(targetId.toString());
        if (molecularProfile == null) {
            return false;
        }
        return hasPermission(authentication, molecularProfile, permission);
    } else if ("SampleList".equals(targetType)) {
        SampleList sampleList = sampleLists.get(targetId.toString());
        if (sampleList == null) {
            return false;
        }
        return hasPermission(authentication, sampleList, permission);
    } else if ("List<SampleListId>".equals(targetType)) {
        return hasAccessToSampleLists(authentication, (List<String>) targetId, permission);
    } else if ("List<CancerStudyId>".equals(targetType)) {
        return hasAccessToCancerStudies(authentication, (List<String>) targetId, permission);
    } else if ("List<MolecularProfileId>".equals(targetType) || "List<GeneticProfileId>".equals(targetType)) {
        return hasAccessToMolecularProfiles(authentication, (List<String>) targetId, permission);
    } else if ("ClinicalAttributeCountFilter".equals(targetType)) {
        return hasAccessToCancerStudies(authentication, (ClinicalAttributeCountFilter) targetId, permission);
    } else if ("ClinicalDataMultiStudyFilter".equals(targetType)) {
        return hasAccessToCancerStudies(authentication, (ClinicalDataMultiStudyFilter) targetId, permission);
    } else if ("GenePanelMultipleStudyFilter".equals(targetType)) {
        GenePanelMultipleStudyFilter genePanelMultipleStudyFilter = (GenePanelMultipleStudyFilter) targetId;
        return hasAccessToCancerStudiesBySampleMolecularIdentifier(authentication,
                genePanelMultipleStudyFilter.getSampleMolecularIdentifiers(), permission);
    } else if ("MolecularDataMultipleStudyFilter".equals(targetType)) {
        MolecularDataMultipleStudyFilter molecularDataMultipleStudyFilter = (MolecularDataMultipleStudyFilter) targetId;
        if (molecularDataMultipleStudyFilter.getMolecularProfileIds() != null) {
            return hasAccessToMolecularProfiles(authentication,
                    molecularDataMultipleStudyFilter.getMolecularProfileIds(), permission);
        } else {
            return hasAccessToCancerStudiesBySampleMolecularIdentifier(authentication,
                    molecularDataMultipleStudyFilter.getSampleMolecularIdentifiers(), permission);
        }
    } else if ("MolecularProfileFilter".equals(targetType)) {
        MolecularProfileFilter molecularProfileFilter = (MolecularProfileFilter) targetId;
        if (molecularProfileFilter.getStudyIds() != null) {
            return hasAccessToCancerStudies(authentication, molecularProfileFilter.getStudyIds(), permission);
        } else {
            return hasAccessToMolecularProfiles(authentication, molecularProfileFilter.getMolecularProfileIds(),
                    permission);
        }
    } else if ("MutationMultipleStudyFilter".equals(targetType)) {
        MutationMultipleStudyFilter mutationMultipleStudyFilter = (MutationMultipleStudyFilter) targetId;
        if (mutationMultipleStudyFilter.getMolecularProfileIds() != null) {
            return hasAccessToMolecularProfiles(authentication,
                    mutationMultipleStudyFilter.getMolecularProfileIds(), permission);
        } else {
            return hasAccessToCancerStudiesBySampleMolecularIdentifier(authentication,
                    mutationMultipleStudyFilter.getSampleMolecularIdentifiers(), permission);
        }
    } else if ("PatientFilter".equals(targetType)) {
        return hasAccessToCancerStudies(authentication, (PatientFilter) targetId, permission);
    } else if ("SampleFilter".equals(targetType)) {
        return hasAccessToCancerStudies(authentication, (SampleFilter) targetId, permission);
    } else if ("ClinicalDataCountFilter".equals(targetType)) {
        return hasAccessToCancerStudiesByClinicalDataCountFilter(authentication,
                (ClinicalDataCountFilter) targetId, permission);
    } else if ("ClinicalDataBinCountFilter".equals(targetType)) {
        return hasAccessToCancerStudiesByClinicalDataBinCountFilter(authentication,
                (ClinicalDataBinCountFilter) targetId, permission);
    } else if ("StudyViewFilter".equals(targetType)) {
        return hasAccessToCancerStudiesByStudyViewFilter(authentication, (StudyViewFilter) targetId,
                permission);
    } else if ("List<SampleIdentifier>".equals(targetType)) {
        return hasAccessToCancerStudiesBySampleIdentifier(authentication, (List<SampleIdentifier>) targetId,
                permission);
    } else {
        if (log.isDebugEnabled()) {
            log.debug("hasPermission(), unknown targetType '" + targetType + "'");
        }
    }
    return false;
}

From source file:tinygsn.storage.StorageManager.java

public void executeInsert(CharSequence tableName, DataField[] fields, StreamElement streamElement,
        Connection connection) throws SQLException {
    PreparedStatement ps = null;/* w  ww  . j av a 2s  .  c  o  m*/
    String query = getStatementInsert(tableName, fields).toString();
    try {
        ps = connection.prepareStatement(query);
        int counter = 1;
        for (DataField dataField : fields) {
            if (dataField.getName().equalsIgnoreCase("timed"))
                continue;
            Serializable value = streamElement.getData(dataField.getName());

            switch (dataField.getDataTypeID()) {
            case DataTypes.VARCHAR:
                if (value == null)
                    ps.setNull(counter, Types.VARCHAR);
                else
                    ps.setString(counter, value.toString());
                break;
            case DataTypes.CHAR:
                if (value == null)
                    ps.setNull(counter, Types.CHAR);
                else
                    ps.setString(counter, value.toString());
                break;
            case DataTypes.INTEGER:
                if (value == null)
                    ps.setNull(counter, Types.INTEGER);
                else
                    ps.setInt(counter, ((Number) value).intValue());
                break;
            case DataTypes.SMALLINT:
                if (value == null)
                    ps.setNull(counter, Types.SMALLINT);
                else
                    ps.setShort(counter, ((Number) value).shortValue());
                break;
            case DataTypes.TINYINT:
                if (value == null)
                    ps.setNull(counter, Types.TINYINT);
                else
                    ps.setByte(counter, ((Number) value).byteValue());
                break;
            case DataTypes.DOUBLE:
                if (value == null)
                    ps.setNull(counter, Types.DOUBLE);
                else
                    ps.setDouble(counter, ((Number) value).doubleValue());
                break;
            case DataTypes.BIGINT:
                if (value == null)
                    ps.setNull(counter, Types.BIGINT);
                else
                    ps.setLong(counter, ((Number) value).longValue());
                break;
            case DataTypes.BINARY:
                if (value == null)
                    ps.setNull(counter, Types.BINARY);
                else
                    ps.setBytes(counter, (byte[]) value);
                break;
            default:
                // logger.error("The type conversion is not supported for : "
                // + dataField.getName() + "(" + dataField.getDataTypeID() + ") : ");
            }
            counter++;
        }
        ps.setLong(counter, streamElement.getTimeStamp());
        ps.execute();
    } catch (GSNRuntimeException e) {
        // if (e.getType() ==
        // GSNRuntimeException.UNEXPECTED_VIRTUAL_SENSOR_REMOVAL) {
        // if (logger.isDebugEnabled())
        //
        // logger
        // .debug(
        // "An stream element dropped due to unexpected virtual sensor removal. (Stream element: "
        // + streamElement.toString() + ")+ Query: " + query, e);
        // } else
        // logger.warn(
        // "Inserting a stream element failed : " + streamElement.toString(), e);
    } catch (SQLException e) {
        if (e.getMessage().toLowerCase().contains("duplicate entry"))
            // logger
            // .info("Error occurred on inserting data to the database, an stream element dropped due to: "
            // + e.getMessage()
            // + ". (Stream element: "
            // + streamElement.toString() + ")+ Query: " + query);
            // else
            // logger
            // .warn("Error occurred on inserting data to the database, an stream element dropped due to: "
            // + e.getMessage()
            // + ". (Stream element: "
            // + streamElement.toString() + ")+ Query: " + query);
            throw e;
    } finally {
        close(ps);
    }
}

From source file:gov.pnnl.goss.gridappsd.app.AppManagerImpl.java

@Override
public void process(int processId, DataResponse event, Serializable message) throws Exception {

    // TODO:Get username from message's metadata e.g. event.getUserName()
    username = GridAppsDConstants.username;

    if (client == null) {
        Credentials credentials = new UsernamePasswordCredentials(GridAppsDConstants.username,
                GridAppsDConstants.password);
        client = clientFactory.create(PROTOCOL.STOMP, credentials);
    }/*from w w w  . j  a  v  a 2 s  .c o m*/
    Destination replyDestination = event.getReplyDestination();

    String destination = event.getDestination();
    if (destination.contains(GridAppsDConstants.topic_app_list)) {
        RequestAppList requestObj = RequestAppList.parse(message.toString());
        if (!requestObj.list_running_only) {
            List<AppInfo> appResponseList = listApps();
            // TODO publish on event.getReplyDestination();
            client.publish(replyDestination, new ResponseAppInfo(appResponseList));

        } else {
            List<AppInstance> appInstanceResponseList;
            if (requestObj.app_id != null) {
                appInstanceResponseList = listRunningApps(requestObj.app_id);
            } else {
                appInstanceResponseList = listRunningApps();
            }
            // TODO publish list on event.getReplyDestination();
            client.publish(replyDestination, new ResponseAppInstance(appInstanceResponseList));

        }

    } else if (destination.contains(GridAppsDConstants.topic_app_get)) {
        String appId = message.toString();
        AppInfo appInfo = getApp(appId);
        // TODO publish appinfo object on reply destination
        client.publish(replyDestination, appInfo);

    } else if (destination.contains(GridAppsDConstants.topic_app_register)) {
        RequestAppRegister requestObj = RequestAppRegister.parse(message.toString());
        registerApp(requestObj.app_info, requestObj.app_package);

    } else if (destination.contains(GridAppsDConstants.topic_app_deregister)) {
        String appId = message.toString();
        deRegisterApp(appId);

    } else if (destination.contains(GridAppsDConstants.topic_app_start)) {
        RequestAppStart requestObj = RequestAppStart.parse(message.toString());
        String instanceId = null;
        if (requestObj.getSimulation_id() == null) {
            instanceId = startApp(requestObj.getApp_id(), requestObj.getRuntime_options(),
                    new Integer(processId).toString());
        } else {
            instanceId = startAppForSimultion(requestObj.getApp_id(), requestObj.getRuntime_options(), null);
        }

        client.publish(replyDestination, instanceId);

    } else if (destination.contains(GridAppsDConstants.topic_app_stop)) {
        String appId = message.toString();
        stopApp(appId);
    } else if (destination.contains(GridAppsDConstants.topic_app_stop_instance)) {
        String appInstanceId = message.toString();
        stopAppInstance(appInstanceId);

    } else {
        // throw error, destination unrecognized
        client.publish(replyDestination,
                new DataError("App manager destination not recognized: " + event.getDestination()));

    }

}