List of usage examples for java.io PrintWriter println
public void println(Object x)
From source file:edu.isi.karma.research.modeling.ModelLearner_LOD.java
public static void main(String[] args) throws Exception { ServletContextParameterMap contextParameters = ContextParametersRegistry.getInstance().getDefault(); contextParameters.setParameterValue(ContextParameter.USER_CONFIG_DIRECTORY, "/Users/mohsen/karma/config"); OntologyManager ontologyManager = new OntologyManager(contextParameters.getId()); File ff = new File(Params.ONTOLOGY_DIR); File[] files = ff.listFiles(); if (files == null) { logger.error("no ontology to import at " + ff.getAbsolutePath()); return;//from w w w . ja v a 2 s . co m } for (File f : files) { if (f.getName().endsWith(".owl") || f.getName().endsWith(".rdf") || f.getName().endsWith(".n3") || f.getName().endsWith(".ttl") || f.getName().endsWith(".xml")) { logger.info("Loading ontology file: " + f.getAbsolutePath()); ontologyManager.doImport(f, "UTF-8"); } } ontologyManager.updateCache(); String outputPath = Params.OUTPUT_DIR; String graphPath = Params.GRAPHS_DIR; FileUtils.cleanDirectory(new File(graphPath)); List<SemanticModel> semanticModels = ModelReader.importSemanticModelsFromJsonFiles(Params.MODEL_DIR, Params.MODEL_MAIN_FILE_EXT); ModelLearner_LOD modelLearner = null; boolean onlyGenerateSemanticTypeStatistics = false; boolean onlyUseOntology = false; boolean useCorrectType = false; int numberOfCandidates = 4; boolean onlyEvaluateInternalLinks = false; int maxPatternSize = 3; if (onlyGenerateSemanticTypeStatistics) { getStatistics(semanticModels); return; } String filePath = Params.RESULTS_DIR + "temp/"; String filename = ""; filename += "lod-results"; filename += useCorrectType ? "-correct" : "-k=" + numberOfCandidates; filename += onlyUseOntology ? "-ontology" : "-p" + maxPatternSize; filename += onlyEvaluateInternalLinks ? "-internal" : "-all"; filename += ".csv"; PrintWriter resultFile = new PrintWriter(new File(filePath + filename)); resultFile.println("source \t p \t r \t t \n"); for (int i = 0; i < semanticModels.size(); i++) { // for (int i = 0; i <= 10; i++) { // int i = 1; { int newSourceIndex = i; SemanticModel newSource = semanticModels.get(newSourceIndex); logger.info("======================================================"); logger.info(newSource.getName() + "(#attributes:" + newSource.getColumnNodes().size() + ")"); System.out.println(newSource.getName() + "(#attributes:" + newSource.getColumnNodes().size() + ")"); logger.info("======================================================"); SemanticModel correctModel = newSource; List<ColumnNode> columnNodes = correctModel.getColumnNodes(); List<Node> steinerNodes = new LinkedList<Node>(columnNodes); String graphName = graphPath + "lod" + Params.GRAPH_FILE_EXT; if (onlyUseOntology) { modelLearner = new ModelLearner_LOD(new GraphBuilder(ontologyManager, false), steinerNodes); } else if (new File(graphName).exists()) { // read graph from file try { logger.info("loading the graph ..."); DirectedWeightedMultigraph<Node, DefaultLink> graph = GraphUtil.importJson(graphName); modelLearner = new ModelLearner_LOD(new GraphBuilderTopK(ontologyManager, graph), steinerNodes); } catch (Exception e) { e.printStackTrace(); resultFile.close(); return; } } else { logger.info("building the graph ..."); // create and save the graph to file // GraphBuilder_Popularity b = new GraphBuilder_Popularity(ontologyManager, // Params.LOD_OBJECT_PROPERIES_FILE, // Params.LOD_DATA_PROPERIES_FILE); GraphBuilder_LOD_Pattern b = new GraphBuilder_LOD_Pattern(ontologyManager, Params.PATTERNS_DIR, maxPatternSize); modelLearner = new ModelLearner_LOD(b.getGraphBuilder(), steinerNodes); } long start = System.currentTimeMillis(); List<SortableSemanticModel> hypothesisList = modelLearner.hypothesize(useCorrectType, numberOfCandidates); long elapsedTimeMillis = System.currentTimeMillis() - start; float elapsedTimeSec = elapsedTimeMillis / 1000F; List<SortableSemanticModel> topHypotheses = null; if (hypothesisList != null) { // for (SortableSemanticModel sss : hypothesisList) { // ModelEvaluation mmm = sss.evaluate(correctModel); // System.out.println(mmm.getPrecision() + ", " + mmm.getRecall()); // } topHypotheses = hypothesisList.size() > 10 ? hypothesisList.subList(0, 10) : hypothesisList; } Map<String, SemanticModel> models = new TreeMap<String, SemanticModel>(); ModelEvaluation me; models.put("1-correct model", correctModel); if (topHypotheses != null) for (int k = 0; k < topHypotheses.size(); k++) { SortableSemanticModel m = topHypotheses.get(k); me = m.evaluate(correctModel, onlyEvaluateInternalLinks, false); String label = "candidate " + k + "\n" + // (m.getSteinerNodes() == null ? "" : m.getSteinerNodes().getScoreDetailsString()) + "link coherence:" + (m.getLinkCoherence() == null ? "" : m.getLinkCoherence().getCoherenceValue()) + "\n"; label += (m.getSteinerNodes() == null || m.getSteinerNodes().getCoherence() == null) ? "" : "node coherence:" + m.getSteinerNodes().getCoherence().getCoherenceValue() + "\n"; label += "confidence:" + m.getConfidenceScore() + "\n"; label += m.getSteinerNodes() == null ? "" : "mapping score:" + m.getSteinerNodes().getScore() + "\n"; label += "cost:" + roundDecimals(m.getCost(), 6) + "\n" + // "-distance:" + me.getDistance() + "-precision:" + me.getPrecision() + "-recall:" + me.getRecall(); models.put(label, m); if (k == 0) { // first rank model System.out.println("precision: " + me.getPrecision() + ", recall: " + me.getRecall() + ", time: " + elapsedTimeSec); logger.info("precision: " + me.getPrecision() + ", recall: " + me.getRecall() + ", time: " + elapsedTimeSec); String s = newSource.getName() + "\t" + me.getPrecision() + "\t" + me.getRecall() + "\t" + elapsedTimeSec; resultFile.println(s); } } String outName = outputPath + newSource.getName() + Params.GRAPHVIS_OUT_DETAILS_FILE_EXT; GraphVizUtil.exportSemanticModelsToGraphviz(models, newSource.getName(), outName, GraphVizLabelType.LocalId, GraphVizLabelType.LocalUri, true, true); } resultFile.close(); }
From source file:EchoClient.java
public static void main(String[] args) throws IOException { Socket echoSocket = null;/* www . j a v a 2s. c o m*/ PrintWriter out = null; BufferedReader in = null; try { echoSocket = new Socket("taranis", 7); out = new PrintWriter(echoSocket.getOutputStream(), true); in = new BufferedReader(new InputStreamReader( echoSocket.getInputStream())); } catch (UnknownHostException e) { System.err.println("Don't know about host: taranis."); System.exit(1); } catch (IOException e) { System.err.println("Couldn't get I/O for " + "the connection to: taranis."); System.exit(1); } BufferedReader stdIn = new BufferedReader( new InputStreamReader(System.in)); String userInput; while ((userInput = stdIn.readLine()) != null) { out.println(userInput); System.out.println("echo: " + in.readLine()); } out.close(); in.close(); stdIn.close(); echoSocket.close(); }
From source file:client.QueryLastFm.java
License:asdf
public static void main(String[] args) throws Exception { // isAlreadyInserted("asdfs","jas,jnjkah"); // FileWriter fw = new FileWriter(".\\tracks.csv"); OutputStream track_os = new FileOutputStream(".\\tracks.csv"); PrintWriter out = new PrintWriter(new OutputStreamWriter(track_os, "UTF-8")); OutputStream track_id_os = new FileOutputStream(".\\track_id_sim_track_id.csv"); PrintWriter track_id_out = new PrintWriter(new OutputStreamWriter(track_id_os, "UTF-8")); track_id_out.print(""); ByteArrayInputStream input;/*from www . j a v a 2 s . c o m*/ Document doc = null; CloseableHttpClient httpclient = HttpClients.createDefault(); String trackName = ""; String artistName = ""; String sourceMbid = ""; out.print("ID");// first row first column out.print(","); out.print("TrackName");// first row second column out.print(","); out.println("Artist");// first row third column track_id_out.print("source");// first row second column track_id_out.print(","); track_id_out.println("target");// first row third column // track_id_out.print(","); // track_id_out.println("type");// first row third column // out.flush(); // out.close(); // fw.close(); // os.close(); try { URI uri = new URIBuilder().setScheme("http").setHost("ws.audioscrobbler.com").setPath("/2.0/") .setParameter("method", "track.getsimilar").setParameter("artist", "cher") .setParameter("track", "believe").setParameter("limit", "100") .setParameter("api_key", "88858618961414f8bec919bddd057044").build(); // new URIBuilder(). HttpGet request = new HttpGet(uri); // request. // This is useful for last.fm logging and preventing them from blocking this client request.setHeader(HttpHeaders.USER_AGENT, "nileshmore@gatech.edu - ClassAssignment at GeorgiaTech Non-commercial use"); HttpGet httpGet = new HttpGet( "http://ws.audioscrobbler.com/2.0/?method=track.getsimilar&artist=cher&track=believe&limit=4&api_key=88858618961414f8bec919bddd057044"); CloseableHttpResponse response = httpclient.execute(request); int statusCode = response.getStatusLine().getStatusCode(); DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance(); DocumentBuilder builder = factory.newDocumentBuilder(); // The underlying HTTP connection is still held by the response object // to allow the response content to be streamed directly from the network socket. // In order to ensure correct deallocation of system resources // the user MUST call CloseableHttpResponse#close() from a finally clause. // Please note that if response content is not fully consumed the underlying // connection cannot be safely re-used and will be shut down and discarded // by the connection manager. try { if (statusCode == 200) { HttpEntity entity1 = response.getEntity(); BufferedReader br = new BufferedReader( new InputStreamReader((response.getEntity().getContent()))); Document document = builder.parse((response.getEntity().getContent())); Element root = document.getDocumentElement(); root.normalize(); // Need to focus and resolve this part NodeList nodes; nodes = root.getChildNodes(); nodes = root.getElementsByTagName("track"); if (nodes.getLength() == 0) { // System.out.println("empty"); return; } Node trackNode; for (int k = 0; k < nodes.getLength(); k++) // can access all tracks now { trackNode = nodes.item(k); NodeList trackAttributes = trackNode.getChildNodes(); // check if mbid is present in track attributes // System.out.println("Length " + (trackAttributes.item(5).getNodeName().compareToIgnoreCase("mbid") == 0)); if ((trackAttributes.item(5).getNodeName().compareToIgnoreCase("mbid") == 0)) { if (((Element) trackAttributes.item(5)).hasChildNodes()) ;// System.out.println("Go aHead"); else continue; } else continue; for (int n = 0; n < trackAttributes.getLength(); n++) { Node attribute = trackAttributes.item(n); if ((attribute.getNodeName().compareToIgnoreCase("name")) == 0) { // System.out.println(((Element)attribute).getFirstChild().getNodeValue()); trackName = ((Element) attribute).getFirstChild().getNodeValue(); // make string encoding as UTF-8 ************ } if ((attribute.getNodeName().compareToIgnoreCase("mbid")) == 0) { // System.out.println(n + " " + ((Element)attribute).getFirstChild().getNodeValue()); sourceMbid = attribute.getFirstChild().getNodeValue(); } if ((attribute.getNodeName().compareToIgnoreCase("artist")) == 0) { NodeList ArtistNodeList = attribute.getChildNodes(); for (int j = 0; j < ArtistNodeList.getLength(); j++) { Node Artistnode = ArtistNodeList.item(j); if ((Artistnode.getNodeName().compareToIgnoreCase("name")) == 0) { // System.out.println(((Element)Artistnode).getFirstChild().getNodeValue()); artistName = ((Element) Artistnode).getFirstChild().getNodeValue(); } } } } out.print(sourceMbid); out.print(","); out.print(trackName); out.print(","); out.println(artistName); // out.print(","); findSimilarTracks(track_id_out, sourceMbid, trackName, artistName); } track_id_out.flush(); out.flush(); out.close(); track_id_out.close(); track_os.close(); // fw.close(); Element trac = (Element) nodes.item(0); // trac.normalize(); nodes = trac.getChildNodes(); // System.out.println(nodes.getLength()); for (int i = 0; i < nodes.getLength(); i++) { Node node = nodes.item(i); // System.out.println(node.getNodeName()); if ((node.getNodeName().compareToIgnoreCase("name")) == 0) { // System.out.println(((Element)node).getFirstChild().getNodeValue()); } if ((node.getNodeName().compareToIgnoreCase("mbid")) == 0) { // System.out.println(((Element)node).getFirstChild().getNodeValue()); } if ((node.getNodeName().compareToIgnoreCase("artist")) == 0) { // System.out.println("Well"); NodeList ArtistNodeList = node.getChildNodes(); for (int j = 0; j < ArtistNodeList.getLength(); j++) { Node Artistnode = ArtistNodeList.item(j); if ((Artistnode.getNodeName().compareToIgnoreCase("name")) == 0) { /* System.out.println(((Element)Artistnode).getFirstChild().getNodeValue());*/ } /*System.out.println(Artistnode.getNodeName());*/ } } } /*if(node instanceof Element){ //a child element to process Element child = (Element) node; String attribute = child.getAttribute("width"); }*/ // System.out.println(root.getAttribute("status")); NodeList tracks = root.getElementsByTagName("track"); Element track = (Element) tracks.item(0); // System.out.println(track.getTagName()); track.getChildNodes(); } else { System.out.println("failed with status" + response.getStatusLine()); } // input = (ByteArrayInputStream)entity1.getContent(); // do something useful with the response body // and ensure it is fully consumed } finally { response.close(); } } finally { System.out.println("Exited succesfully."); httpclient.close(); } }
From source file:com.tremolosecurity.openunison.util.OpenUnisonUtils.java
public static void main(String[] args) throws Exception { logger = org.apache.logging.log4j.LogManager.getLogger(OpenUnisonUtils.class.getName()); Options options = new Options(); options.addOption("unisonXMLFile", true, "The full path to the Unison xml file"); options.addOption("keystorePath", true, "The full path to the Unison keystore"); options.addOption("chainName", true, "The name of the authentication chain"); options.addOption("mechanismName", true, "The name of the authentication mechanism for SAML2"); options.addOption("idpName", true, "The name of the identity provider application"); options.addOption("pathToMetaData", true, "The full path to the saml2 metadata file"); options.addOption("createDefault", false, "If set, add default parameters"); options.addOption("action", true, "export-sp-metadata, import-sp-metadata, export-secretkey, print-secretkey, import-idp-metadata, export-idp-metadata, clear-dlq, import-secretkey, create-secretkey"); options.addOption("urlBase", true, "Base URL, no URI; https://host:port"); options.addOption("alias", true, "Key alias"); options.addOption("newKeystorePath", true, "Path to the new keystore"); options.addOption("newKeystorePassword", true, "Password for the new keystore"); options.addOption("help", false, "Prints this message"); options.addOption("signMetadataWithKey", true, "Signs the metadata with the specified key"); options.addOption("dlqName", true, "The name of the dead letter queue"); options.addOption("upgradeFrom106", false, "Updates workflows from 1.0.6"); options.addOption("secretkey", true, "base64 encoded secret key"); options.addOption("envFile", true, "Environment variables for parmaterized configs"); CommandLineParser parser = new DefaultParser(); CommandLine cmd = parser.parse(options, args, true); if (args.length == 0 || cmd.hasOption("help")) { HelpFormatter formatter = new HelpFormatter(); formatter.printHelp("OpenUnisonUtils", options); }// w w w .ja v a 2 s. c om logger.info("Loading Unison Configuration"); String unisonXMLFile = loadOption(cmd, "unisonXMLFile", options); TremoloType ttRead = loadTremoloType(unisonXMLFile, cmd, options); String action = loadOption(cmd, "action", options); TremoloType ttWrite = null; if (action.equalsIgnoreCase("import-sp-metadata") || action.equalsIgnoreCase("import-idp-metadata")) { ttWrite = loadTremoloType(unisonXMLFile); } logger.info("Configuration loaded"); logger.info("Loading the keystore..."); String ksPath = loadOption(cmd, "keystorePath", options); KeyStore ks = loadKeyStore(ksPath, ttRead); logger.info("...loaded"); if (action.equalsIgnoreCase("import-sp-metadata")) { importMetaData(options, cmd, unisonXMLFile, ttRead, ttWrite, ksPath, ks); } else if (action.equalsIgnoreCase("export-sp-metadata")) { exportSPMetaData(options, cmd, ttRead, ks); } else if (action.equalsIgnoreCase("print-secretkey")) { printSecreyKey(options, cmd, ttRead, ks); } else if (action.equalsIgnoreCase("import-secretkey")) { importSecreyKey(options, cmd, ttRead, ks, ksPath); } else if (action.equalsIgnoreCase("create-secretkey")) { Security.addProvider(new BouncyCastleProvider()); logger.info("Creating AES-256 secret key"); String alias = loadOption(cmd, "alias", options); logger.info("Alias : '" + alias + "'"); KeyGenerator kg = KeyGenerator.getInstance("AES", "BC"); kg.init(256, new SecureRandom()); SecretKey sk = kg.generateKey(); ks.setKeyEntry(alias, sk, ttRead.getKeyStorePassword().toCharArray(), null); logger.info("Saving key"); ks.store(new FileOutputStream(ksPath), ttRead.getKeyStorePassword().toCharArray()); logger.info("Finished"); } else if (action.equalsIgnoreCase("export-secretkey")) { logger.info("Export Secret Key"); logger.info("Loading key"); String alias = loadOption(cmd, "alias", options); SecretKey key = (SecretKey) ks.getKey(alias, ttRead.getKeyStorePassword().toCharArray()); logger.info("Loading new keystore path"); String pathToNewKeystore = loadOption(cmd, "newKeystorePath", options); logger.info("Loading new keystore password"); String ksPassword = loadOption(cmd, "newKeystorePassword", options); KeyStore newKS = KeyStore.getInstance("PKCS12"); newKS.load(null, ttRead.getKeyStorePassword().toCharArray()); newKS.setKeyEntry(alias, key, ksPassword.toCharArray(), null); newKS.store(new FileOutputStream(pathToNewKeystore), ksPassword.toCharArray()); logger.info("Exported"); } else if (action.equalsIgnoreCase("import-idp-metadata")) { importIdpMetadata(options, cmd, unisonXMLFile, ttRead, ttWrite, ksPath, ks); } else if (action.equalsIgnoreCase("export-idp-metadata")) { exportIdPMetadata(options, cmd, ttRead, ks); } else if (action.equalsIgnoreCase("clear-dlq")) { logger.info("Getting the DLQ Name..."); String dlqName = loadOption(cmd, "dlqName", options); QueUtils.emptyDLQ(ttRead, dlqName); } else if (action.equalsIgnoreCase("upgradeFrom106")) { logger.info("Upgrading OpenUnison's configuration from 1.0.6"); String backupFileName = unisonXMLFile + ".bak"; logger.info("Backing up to '" + backupFileName + "'"); BufferedReader in = new BufferedReader(new InputStreamReader(new FileInputStream(unisonXMLFile))); PrintWriter out = new PrintWriter(new FileOutputStream(backupFileName)); String line = null; while ((line = in.readLine()) != null) { out.println(line); } out.flush(); out.close(); in.close(); ByteArrayOutputStream bout = new ByteArrayOutputStream(); AddChoiceToTasks.convert(new FileInputStream(unisonXMLFile), bout); FileOutputStream fsout = new FileOutputStream(unisonXMLFile); fsout.write(bout.toByteArray()); fsout.flush(); fsout.close(); } }
From source file:htmlwordtag.HtmlWordTag.java
public static void main(String[] args) throws RepositoryException, MalformedQueryException, QueryEvaluationException { //get current path String current = System.getProperty("user.dir"); //get html file from internet loadhtml();/*from w w w. j ava2 s .c om*/ //make director for output verifyArgs(); //translate html file to rdf HtmlWordTag httpClientPost = new HtmlWordTag(); httpClientPost.input = new File("input"); httpClientPost.output = new File("output"); httpClientPost.client = new HttpClient(); httpClientPost.client.getParams().setParameter("http.useragent", "Calais Rest Client"); httpClientPost.run(); //create main memory repository Repository repo = new SailRepository(new MemoryStore()); repo.initialize(); File file = new File(current + "\\output\\website1.html.xml"); RepositoryConnection con = repo.getConnection(); try { con.add(file, null, RDFFormat.RDFXML); } catch (OpenRDFException e) { // handle exception } catch (java.io.IOException e) { // handle io exception } System.out.println(con.isEmpty()); //query entire repostiory String queryString = "PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>\n" + "PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>\n" + "PREFIX c: <http://s.opencalais.com/1/type/em/e/>\n" + "PREFIX p: <http://s.opencalais.com/1/pred/>\n" + "PREFIX geo: <http://s.opencalais.com/1/type/er/Geo/>\n" + "SELECT distinct ?s ?n\n" + "WHERE {\n" + "{ ?s rdf:type c:Organization.\n" + " ?s p:name ?n.\n}" + " UNION \n" + "{ ?s rdf:type c:Person.\n" + " ?s p:name ?n.\n}" + " UNION \n" + "{ ?s rdf:type geo:City.\n" + " ?s p:name ?n.\n}" + "}"; //System.out.println(queryString); //insert query through sparql repository connection TupleQuery tupleQuery = con.prepareTupleQuery(QueryLanguage.SPARQL, queryString); TupleQueryResult result = tupleQuery.evaluate(); File queryresultdir = new File(current + "\\queryresult"); if (!queryresultdir.exists()) { if (queryresultdir.mkdir()) { System.out.println("Directory is created!"); } else { System.out.println("Failed to create directory!"); } } File queryresult = null; try { // create new file queryresult = new File(current + "\\queryresult\\queryresult1.txt"); // tries to create new file in the system if (queryresult.exists()) { if (queryresult.delete()) { System.out.println("file queryresult1.txt is already exist."); System.out.println("file queryresult1.txt has been delete."); if (queryresult.createNewFile()) { System.out.println("create queryresult1.txt success"); } else { System.out.println("fail to create queryresult1.txt"); } } else { System.out.println("fail to delete queryresult1.txt."); } } else { if (queryresult.createNewFile()) { System.out.println("create queryresult1.txt success"); } else { System.out.println("fail to create queryresult1.txt"); } } } catch (Exception e) { e.printStackTrace(); } try { PrintWriter outputStream = null; try { outputStream = new PrintWriter(new FileOutputStream(current + "\\queryresult\\queryresult1.txt")); } catch (FileNotFoundException e) { System.out.println("Error to find file queryresult1.txt"); System.exit(0); } //go through all triple in sparql repository while (result.hasNext()) { // iterate over the result BindingSet bindingSet = result.next(); Value valueOfS = bindingSet.getValue("s"); Value valueOfN = bindingSet.getValue("n"); System.out.println(valueOfS + " " + valueOfN); outputStream.println(valueOfS + " " + valueOfN); } outputStream.close(); } finally { result.close(); } //create main memory repository Repository repo2 = new SailRepository(new MemoryStore()); repo2.initialize(); File file2 = new File(current + "\\output\\website2.html.xml"); RepositoryConnection con2 = repo2.getConnection(); try { con2.add(file2, null, RDFFormat.RDFXML); } catch (OpenRDFException e) { // handle exception } catch (java.io.IOException e) { // handle io exception } System.out.println(con2.isEmpty()); //query entire repostiory String queryString2 = "PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>\n" + "PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>\n" + "PREFIX c: <http://s.opencalais.com/1/type/em/e/>\n" + "PREFIX p: <http://s.opencalais.com/1/pred/>\n" + "PREFIX geo: <http://s.opencalais.com/1/type/er/Geo/>\n" + "SELECT distinct ?s ?n\n" + "WHERE {\n" + "{ ?s rdf:type c:Organization.\n" + " ?s p:name ?n.\n}" + " UNION \n" + "{ ?s rdf:type c:Person.\n" + " ?s p:name ?n.\n}" + " UNION \n" + "{ ?s rdf:type geo:City.\n" + " ?s p:name ?n.\n}" + "}"; //System.out.println(queryString2); //insert query through sparql repository connection TupleQuery tupleQuery2 = con2.prepareTupleQuery(QueryLanguage.SPARQL, queryString2); TupleQueryResult result2 = tupleQuery2.evaluate(); File queryresult2 = null; try { // create new file queryresult2 = new File(current + "\\queryresult\\queryresult2.txt"); // tries to create new file in the system if (queryresult2.exists()) { if (queryresult2.delete()) { System.out.println("file queryresult2.txt is already exist."); System.out.println("file queryresult2.txt has been delete."); if (queryresult2.createNewFile()) { System.out.println("create queryresult2.txt success"); } else { System.out.println("fail to create queryresult2.txt"); } } else { System.out.println("fail to delete queryresult2.txt."); } } else { if (queryresult2.createNewFile()) { System.out.println("create queryresult2.txt success"); } else { System.out.println("fail to create queryresult2.txt"); } } } catch (Exception e) { e.printStackTrace(); } try { PrintWriter outputStream2 = null; try { outputStream2 = new PrintWriter(new FileOutputStream(current + "\\queryresult\\queryresult2.txt")); } catch (FileNotFoundException e) { System.out.println("Error to find file queryresult2.txt"); System.exit(0); } //go through all triple in sparql repository while (result2.hasNext()) { // iterate over the result BindingSet bindingSet = result2.next(); Value valueOfS = bindingSet.getValue("s"); Value valueOfN = bindingSet.getValue("n"); System.out.println(valueOfS + " " + valueOfN); outputStream2.println(valueOfS + " " + valueOfN); } outputStream2.close(); } finally { result2.close(); } }
From source file:EchoClient.java
public static void main(String[] args) throws IOException { Socket kkSocket = null;//w ww . j av a 2 s. c o m PrintWriter out = null; BufferedReader in = null; try { kkSocket = new Socket("taranis", 4444); out = new PrintWriter(kkSocket.getOutputStream(), true); in = new BufferedReader(new InputStreamReader(kkSocket.getInputStream())); } catch (UnknownHostException e) { System.err.println("Don't know about host: taranis."); System.exit(1); } catch (IOException e) { System.err.println("Couldn't get I/O for the connection to: taranis."); System.exit(1); } BufferedReader stdIn = new BufferedReader(new InputStreamReader(System.in)); String fromServer; String fromUser; while ((fromServer = in.readLine()) != null) { System.out.println("Server: " + fromServer); if (fromServer.equals("Bye.")) break; fromUser = stdIn.readLine(); if (fromUser != null) { System.out.println("Client: " + fromUser); out.println(fromUser); } } out.close(); in.close(); stdIn.close(); kkSocket.close(); }
From source file:microbiosima.Microbiosima.java
/** * @param args//from w w w .ja v a 2 s . co m * the command line arguments * @throws java.io.FileNotFoundException * @throws java.io.UnsupportedEncodingException */ public static void main(String[] args) throws FileNotFoundException, UnsupportedEncodingException { //Init with default values int populationSize = 500; int microSize = 1000; int numberOfSpecies = 150; int numberOfGeneration = 10000; int numberOfObservation = 100; int numberOfReplication = 1; double pctEnv = 0; double pctPool = 0; Options options = new Options(); Option help = new Option("h", "help", false, "print this message"); Option version = new Option("v", "version", false, "print the version information and exit"); options.addOption(help); options.addOption(version); options.addOption(Option.builder("o").longOpt("obs").hasArg().argName("OBS") .desc("Number generation for observation [default: 100]").build()); options.addOption(Option.builder("r").longOpt("rep").hasArg().argName("REP") .desc("Number of replication [default: 1]").build()); Builder C = Option.builder("c").longOpt("config").numberOfArgs(4).argName("Pop Micro Spec Gen") .desc("Four Parameters in the following orders: " + "(1) population size, (2) microbe size, (3) number of species, (4) number of generation" + " [default: 500 1000 150 10000]"); options.addOption(C.build()); HelpFormatter formatter = new HelpFormatter(); String syntax = "microbiosima pctEnv pctPool"; String header = "\nSimulates the evolutionary and ecological dynamics of microbiomes within a population of hosts.\n\n" + "required arguments:\n" + " pctEnv Percentage of environmental acquisition\n" + " pctPool Percentage of pooled environmental component\n" + "\noptional arguments:\n"; String footer = "\n"; formatter.setWidth(80); CommandLineParser parser = new DefaultParser(); CommandLine cmd = null; try { cmd = parser.parse(options, args); String[] pct_config = cmd.getArgs(); if (cmd.hasOption("h") || args.length == 0) { formatter.printHelp(syntax, header, options, footer, true); System.exit(0); } if (cmd.hasOption("v")) { System.out.println("Microbiosima " + VERSION); System.exit(0); } if (pct_config.length != 2) { System.out.println("ERROR! Required exactly two argumennts for pct_env and pct_pool. It got " + pct_config.length + ": " + Arrays.toString(pct_config)); formatter.printHelp(syntax, header, options, footer, true); System.exit(3); } else { pctEnv = Double.parseDouble(pct_config[0]); pctPool = Double.parseDouble(pct_config[1]); if (pctEnv < 0 || pctEnv > 1) { System.out.println( "ERROR: pctEnv (Percentage of environmental acquisition) must be between 0 and 1 (pctEnv=" + pctEnv + ")! EXIT"); System.exit(3); } if (pctPool < 0 || pctPool > 1) { System.out.println( "ERROR: pctPool (Percentage of pooled environmental component must) must be between 0 and 1 (pctPool=" + pctPool + ")! EXIT"); System.exit(3); } } if (cmd.hasOption("config")) { String[] configs = cmd.getOptionValues("config"); populationSize = Integer.parseInt(configs[0]); microSize = Integer.parseInt(configs[1]); numberOfSpecies = Integer.parseInt(configs[2]); numberOfGeneration = Integer.parseInt(configs[3]); } if (cmd.hasOption("obs")) { numberOfObservation = Integer.parseInt(cmd.getOptionValue("obs")); } if (cmd.hasOption("rep")) { numberOfReplication = Integer.parseInt(cmd.getOptionValue("rep")); } } catch (ParseException e) { e.printStackTrace(); System.exit(3); } StringBuilder sb = new StringBuilder(); sb.append("Configuration Summary:").append("\n\tPopulation size: ").append(populationSize) .append("\n\tMicrobe size: ").append(microSize).append("\n\tNumber of species: ") .append(numberOfSpecies).append("\n\tNumber of generation: ").append(numberOfGeneration) .append("\n\tNumber generation for observation: ").append(numberOfObservation) .append("\n\tNumber of replication: ").append(numberOfReplication).append("\n"); System.out.println(sb.toString()); // System.exit(3); // LogNormalDistribution lgd=new LogNormalDistribution(0,1); // environment=lgd.sample(150); // double environment_sum=0; // for (int i=0;i<No;i++){ // environment_sum+=environment[i]; // } // for (int i=0;i<No;i++){ // environment[i]/=environment_sum; // } double[] environment = new double[numberOfSpecies]; for (int i = 0; i < numberOfSpecies; i++) { environment[i] = 1 / (double) numberOfSpecies; } for (int rep = 0; rep < numberOfReplication; rep++) { String prefix = "" + (rep + 1) + "_"; String sufix = "_E" + pctEnv + "_P" + pctPool + ".txt"; System.out.println("Output 5 result files in the format of: " + prefix + "[****]" + sufix); try { PrintWriter file1 = new PrintWriter( new BufferedWriter(new FileWriter(prefix + "gamma_diversity" + sufix))); PrintWriter file2 = new PrintWriter( new BufferedWriter(new FileWriter(prefix + "alpha_diversity" + sufix))); PrintWriter file3 = new PrintWriter( new BufferedWriter(new FileWriter(prefix + "beta_diversity" + sufix))); PrintWriter file4 = new PrintWriter(new BufferedWriter(new FileWriter(prefix + "sum" + sufix))); PrintWriter file5 = new PrintWriter( new BufferedWriter(new FileWriter(prefix + "inter_generation_distance" + sufix))); PrintWriter file6 = new PrintWriter( new BufferedWriter(new FileWriter(prefix + "environment_population_distance" + sufix))); Population population = new Population(microSize, environment, populationSize, pctEnv, pctPool, 0, 0); while (population.getNumberOfGeneration() < numberOfGeneration) { population.sumSpecies(); if (population.getNumberOfGeneration() % numberOfObservation == 0) { file1.println(population.gammaDiversity(true)); file2.println(population.alphaDiversity(true)); file3.print(population.betaDiversity(true)); file3.print("\t"); file3.println(population.BrayCurtis(true)); file4.println(population.printOut()); file5.println(population.interGenerationDistance()); file6.println(population.environmentPopulationDistance()); } population.getNextGen(); } file1.close(); file2.close(); file3.close(); file4.close(); file5.close(); file6.close(); } catch (IOException e) { e.printStackTrace(); } } }
From source file:AndroidUninstallStock.java
@SuppressWarnings("static-access") public static void main(String[] args) { try {/*w w w . j a v a 2 s. c o m*/ String lang = Locale.getDefault().getLanguage(); GnuParser cmdparser = new GnuParser(); Options cmdopts = new Options(); for (String fld : Arrays.asList("shortOpts", "longOpts", "optionGroups")) { // hack for printOptions java.lang.reflect.Field fieldopt = cmdopts.getClass().getDeclaredField(fld); fieldopt.setAccessible(true); fieldopt.set(cmdopts, new LinkedHashMap<>()); } cmdopts.addOption("h", "help", false, "Help"); cmdopts.addOption("t", "test", false, "Show only report"); cmdopts.addOption(OptionBuilder.withLongOpt("adb").withArgName("file").hasArg() .withDescription("Path to ADB from Android SDK").create("a")); cmdopts.addOption(OptionBuilder.withLongOpt("dev").withArgName("device").hasArg() .withDescription("Select device (\"adb devices\")").create("d")); cmdopts.addOption(null, "restore", false, "If packages have not yet removed and are disabled, " + "you can activate them again"); cmdopts.addOption(null, "google", false, "Delete packages are in the Google section"); cmdopts.addOption(null, "unapk", false, "Delete /system/app/ *.apk *.odex *.dex" + System.lineSeparator() + "(It is required to repeat command execution)"); cmdopts.addOption(null, "unlib", false, "Delete /system/lib/[libs in apk]"); //cmdopts.addOption(null, "unfrw", false, "Delete /system/framework/ (special list)"); cmdopts.addOption(null, "scanlibs", false, "(Dangerous!) Include all the libraries of selected packages." + " Use with --unlib"); cmdopts.addOptionGroup(new OptionGroup() { { addOption(OptionBuilder.withLongOpt("genfile").withArgName("file").hasArg().isRequired() .withDescription("Create file with list packages").create()); addOption(OptionBuilder.withLongOpt("lang").withArgName("ISO 639").hasArg().create()); } }); cmdopts.getOption("lang").setDescription( "See hl= in Google URL (default: " + lang + ") " + "for description from Google Play Market"); CommandLine cmd = cmdparser.parse(cmdopts, args); if (args.length == 0 || cmd.hasOption("help")) { PrintWriter console = new PrintWriter(System.out); HelpFormatter cmdhelp = new HelpFormatter(); cmdhelp.setOptionComparator(new Comparator<Option>() { @Override public int compare(Option o1, Option o2) { return 0; } }); console.println("WARNING: Before use make a backup with ClockworkMod Recovery!"); console.println(); console.println("AndroidUninstallStock [options] [AndroidListSoft.xml]"); cmdhelp.printOptions(console, 80, cmdopts, 3, 2); console.flush(); return; } String adb = cmd.getOptionValue("adb", "adb"); try { run(adb, "start-server"); } catch (IOException e) { System.out.println("Error: Not found ADB! Use -a or --adb"); return; } final boolean NotTest = !cmd.hasOption("test"); String deverror = getDeviceStatus(adb, cmd.getOptionValue("dev")); if (!deverror.isEmpty()) { System.out.println(deverror); return; } System.out.println("Getting list packages:"); LinkedHashMap<String, String> apklist = new LinkedHashMap<String, String>(); for (String ln : run(adb, "-s", lastdevice, "shell", "pm list packages -s -f")) { // "pm list packages" give list sorted by packages ;) String pckg = ln.substring("package:".length()); String pckgname = ln.substring(ln.lastIndexOf('=') + 1); pckg = pckg.substring(0, pckg.length() - pckgname.length() - 1); if (!pckgname.equals("android") && !pckgname.equals("com.android.vending")/*Google Play Market*/) { apklist.put(pckg, pckgname); } } for (String ln : run(adb, "-s", lastdevice, "shell", "ls /system/app/")) { String path = "/system/app/" + ln.replace(".odex", ".apk").replace(".dex", ".apk"); if (!apklist.containsKey(path)) { apklist.put(path, ""); } } apklist.remove("/system/app/mcRegistry"); for (Map.Entry<String, String> info : sortByValues(apklist).entrySet()) { System.out.println(info.getValue() + " = " + info.getKey()); } String genfile = cmd.getOptionValue("genfile"); if (genfile != null) { Path genpath = Paths.get(genfile); try (BufferedWriter gen = Files.newBufferedWriter(genpath, StandardCharsets.UTF_8, new StandardOpenOption[] { StandardOpenOption.CREATE, StandardOpenOption.TRUNCATE_EXISTING, StandardOpenOption.WRITE })) { if (cmd.getOptionValue("lang") != null) { lang = cmd.getOptionValue("lang"); } LinkedHashSet<String> listsystem = new LinkedHashSet<String>() { { add("com.android"); add("com.google.android"); //add("com.sec.android.app"); add("com.monotype.android"); add("eu.chainfire.supersu"); } }; // \r\n for Windows Notepad gen.write("<?xml version=\"1.0\" encoding=\"UTF-8\"?>\r\n"); gen.write("<!-- & raplace with & or use <![CDATA[ ]]> -->\r\n"); gen.write("<AndroidUninstallStock>\r\n\r\n"); gen.write("<Normal>\r\n"); System.out.println(); System.out.println("\tNormal:"); writeInfo(gen, apklist, lang, listsystem, true); gen.write("\t<apk name=\"Exclude Google and etc\">\r\n"); for (String exc : listsystem) { gen.write("\t\t<exclude global=\"true\" in=\"package\" pattern=\"" + exc + "\" />\r\n"); } gen.write("\t</apk>\r\n"); gen.write("</Normal>\r\n\r\n"); gen.write("<Google>\r\n"); System.out.println(); System.out.println("\tGoogle:"); writeInfo(gen, apklist, lang, listsystem, false); gen.write("</Google>\r\n\r\n"); gen.write("</AndroidUninstallStock>\r\n"); System.out.println("File " + genpath.toAbsolutePath() + " created."); } return; } String[] FileName = cmd.getArgs(); if (!(FileName.length > 0 && Files.isReadable(Paths.get(FileName[0])))) { System.out.println("Error: File " + FileName[0] + " not found!"); return; } DocumentBuilderFactory xmlfactory = getXmlDocFactory(); // DocumentBuilder.setErrorHandler() for print errors Document xml = xmlfactory.newDocumentBuilder().parse(new File(FileName[0])); LinkedList<AusInfo> Normal = new LinkedList<AusInfo>(); LinkedList<AusInfo> Google = new LinkedList<AusInfo>(); NodeList ndaus = xml.getElementsByTagName("AndroidUninstallStock").item(0).getChildNodes(); for (int ndausx = 0, ndausc = ndaus.getLength(); ndausx < ndausc; ndausx++) { Node ndnow = ndaus.item(ndausx); NodeList nd = ndnow.getChildNodes(); String ndname = ndnow.getNodeName(); for (int ndx = 0, ndc = nd.getLength(); ndx < ndc; ndx++) { if (!nd.item(ndx).getNodeName().equalsIgnoreCase("apk")) { continue; } if (ndname.equalsIgnoreCase("Normal")) { Normal.add(getApkInfo(nd.item(ndx))); } else if (ndname.equalsIgnoreCase("Google")) { Google.add(getApkInfo(nd.item(ndx))); } } } // FIXME This part must be repeated until the "pm uninstall" will not issue "Failure" on all packages. // Now requires a restart. System.out.println(); System.out.println("Include and Exclude packages (Normal):"); LinkedHashMap<String, String> apkNormal = getApkFromPattern(apklist, Normal, false); System.out.println(); System.out.println("Global Exclude packages (Normal):"); apkNormal = getApkFromPattern(apkNormal, Normal, true); System.out.println(); System.out.println("Final list packages (Normal):"); for (Map.Entry<String, String> info : sortByValues(apkNormal).entrySet()) { System.out.println(info.getValue() + " = " + info.getKey()); } LinkedHashMap<String, String> apkGoogle = new LinkedHashMap<String, String>(); if (cmd.hasOption("google")) { System.out.println(); System.out.println("Include and Exclude packages (Google):"); apkGoogle = getApkFromPattern(apklist, Google, false); System.out.println(); System.out.println("Global Exclude packages (Google):"); apkGoogle = getApkFromPattern(apkGoogle, Google, true); System.out.println(); System.out.println("Final list packages (Google):"); for (Map.Entry<String, String> info : sortByValues(apkGoogle).entrySet()) { System.out.println(info.getValue() + " = " + info.getKey()); } } if (NotTest) { if (!hasRoot(adb)) { System.out.println("No Root"); System.out.println(); System.out.println("FINISH :)"); return; } } if (cmd.hasOption("restore")) { System.out.println(); System.out.println("Enable (Restore) packages (Normal):"); damage(adb, "pm enable ", NotTest, apkNormal, 2); if (cmd.hasOption("google")) { System.out.println(); System.out.println("Enable (Restore) packages (Google):"); damage(adb, "pm enable ", NotTest, apkGoogle, 2); } System.out.println(); System.out.println("FINISH :)"); return; } else { System.out.println(); System.out.println("Disable packages (Normal):"); damage(adb, "pm disable ", NotTest, apkNormal, 2); if (cmd.hasOption("google")) { System.out.println(); System.out.println("Disable packages (Google):"); damage(adb, "pm disable ", NotTest, apkGoogle, 2); } } if (!cmd.hasOption("unapk") && !cmd.hasOption("unlib")) { System.out.println(); System.out.println("FINISH :)"); return; } // Reboot now not needed /*if (NotTest) { reboot(adb, "-s", lastdevice, "reboot"); if (!hasRoot(adb)) { System.out.println("No Root"); System.out.println(); System.out.println("FINISH :)"); return; } }*/ if (cmd.hasOption("unlib")) { // "find" not found System.out.println(); System.out.println("Getting list libraries:"); LinkedList<String> liblist = new LinkedList<String>(); liblist.addAll(run(adb, "-s", lastdevice, "shell", "ls -l /system/lib/")); String dircur = "/system/lib/"; for (int x = 0; x < liblist.size(); x++) { if (liblist.get(x).startsWith("scan:")) { dircur = liblist.get(x).substring("scan:".length()); liblist.remove(x); x--; } else if (liblist.get(x).startsWith("d")) { String dir = liblist.get(x).substring(liblist.get(x).lastIndexOf(':') + 4) + "/"; liblist.remove(x); x--; liblist.add("scan:/system/lib/" + dir); liblist.addAll(run(adb, "-s", lastdevice, "shell", "ls -l /system/lib/" + dir)); continue; } liblist.set(x, dircur + liblist.get(x).substring(liblist.get(x).lastIndexOf(':') + 4)); System.out.println(liblist.get(x)); } final boolean scanlibs = cmd.hasOption("scanlibs"); LinkedHashMap<String, String> libNormal = getLibFromPatternInclude(adb, liblist, apkNormal, Normal, "Normal", scanlibs); libNormal = getLibFromPatternGlobalExclude(libNormal, Normal, "Normal"); System.out.println(); System.out.println("Final list libraries (Normal):"); for (Map.Entry<String, String> info : sortByValues(libNormal).entrySet()) { System.out.println(info.getKey() + " = " + info.getValue()); } LinkedHashMap<String, String> libGoogle = new LinkedHashMap<String, String>(); if (cmd.hasOption("google")) { libGoogle = getLibFromPatternInclude(adb, liblist, apkGoogle, Google, "Google", scanlibs); libGoogle = getLibFromPatternGlobalExclude(libGoogle, Google, "Google"); System.out.println(); System.out.println("Final list libraries (Google):"); for (Map.Entry<String, String> info : sortByValues(libGoogle).entrySet()) { System.out.println(info.getKey() + " = " + info.getValue()); } } LinkedHashMap<String, String> apkExclude = new LinkedHashMap<String, String>(apklist); for (String key : apkNormal.keySet()) { apkExclude.remove(key); } for (String key : apkGoogle.keySet()) { apkExclude.remove(key); } System.out.println(); System.out.println("Include libraries from Exclude packages:"); LinkedHashMap<String, String> libExclude = getLibFromPackage(adb, liblist, apkExclude); System.out.println(); System.out.println("Enclude libraries from Exclude packages (Normal):"); for (Map.Entry<String, String> info : sortByValues(libNormal).entrySet()) { if (libExclude.containsKey(info.getKey())) { System.out.println("exclude: " + info.getKey() + " = " + libExclude.get(info.getKey())); libNormal.remove(info.getKey()); } } System.out.println(); System.out.println("Enclude libraries from Exclude packages (Google):"); for (Map.Entry<String, String> info : sortByValues(libGoogle).entrySet()) { if (libExclude.containsKey(info.getKey())) { System.out.println("exclude: " + info.getKey() + " = " + libExclude.get(info.getKey())); libGoogle.remove(info.getKey()); } } System.out.println(); System.out.println("Delete libraries (Normal):"); damage(adb, "rm ", NotTest, libNormal, 1); if (cmd.hasOption("google")) { System.out.println(); System.out.println("Delete libraries (Google):"); damage(adb, "rm ", NotTest, libGoogle, 1); } } if (cmd.hasOption("unapk")) { System.out.println(); System.out.println("Cleaning data packages (Normal):"); damage(adb, "pm clear ", NotTest, apkNormal, 2); if (cmd.hasOption("google")) { System.out.println(); System.out.println("Cleaning data packages (Google):"); damage(adb, "pm clear ", NotTest, apkGoogle, 2); } System.out.println(); System.out.println("Uninstall packages (Normal):"); damage(adb, "pm uninstall ", NotTest, apkNormal, 2); if (cmd.hasOption("google")) { System.out.println(); System.out.println("Uninstall packages (Google):"); damage(adb, "pm uninstall ", NotTest, apkGoogle, 2); } } if (cmd.hasOption("unapk")) { System.out.println(); System.out.println("Delete packages (Normal):"); LinkedHashMap<String, String> dexNormal = new LinkedHashMap<String, String>(); for (Map.Entry<String, String> apk : apkNormal.entrySet()) { dexNormal.put(apk.getKey(), apk.getValue()); dexNormal.put(apk.getKey().replace(".apk", ".dex"), apk.getValue()); dexNormal.put(apk.getKey().replace(".apk", ".odex"), apk.getValue()); } damage(adb, "rm ", NotTest, dexNormal, 1); if (cmd.hasOption("google")) { System.out.println(); System.out.println("Delete packages (Google):"); LinkedHashMap<String, String> dexGoogle = new LinkedHashMap<String, String>(); for (Map.Entry<String, String> apk : apkGoogle.entrySet()) { dexGoogle.put(apk.getKey(), apk.getValue()); dexGoogle.put(apk.getKey().replace(".apk", ".dex"), apk.getValue()); dexGoogle.put(apk.getKey().replace(".apk", ".odex"), apk.getValue()); } damage(adb, "rm ", NotTest, dexGoogle, 1); } } if (NotTest) { run(adb, "-s", lastdevice, "reboot"); } System.out.println(); System.out.println("FINISH :)"); } catch (SAXException e) { System.out.println("Error parsing list: " + e); } catch (Throwable e) { e.printStackTrace(); } }
From source file:eu.fbk.utils.lsa.util.Anvur.java
public static void main(String[] args) throws Exception { String logConfig = System.getProperty("log-config"); if (logConfig == null) { logConfig = "log-config.txt"; }/*from w w w. j a v a 2s .c o m*/ PropertyConfigurator.configure(logConfig); /* if (args.length != 2) { log.println("Usage: java -mx512M eu.fbk.utils.lsa.util.Anvur in-file out-dir"); System.exit(1); } File l = new File(args[1]); if (!l.exists()) { l.mkdir(); } List<String[]> list = readText(new File(args[0])); String oldCategory = ""; for (int i=0;i<list.size();i++) { String[] s = list.get(i); if (!oldCategory.equals(s[0])) { File f = new File(args[1] + File.separator + s[0]); boolean b = f.mkdir(); logger.debug(f + " created " + b); } File g = new File(args[1] + File.separator + s[0] + File.separator + s[1] + ".txt"); logger.debug("writing " + g + "..."); PrintWriter pw = new PrintWriter(new FileWriter(g)); //pw.println(tokenize(s[1].substring(0, s[1].indexOf(".")).replace('_', ' ') + " " + s[2])); if (s.length == 5) { pw.println(tokenize(s[1].substring(0, s[1].indexOf(".")).replace('_', ' ') + " " + s[2] + " " + s[4].replace('_', ' '))); } else { pw.println(tokenize(s[1].substring(0, s[1].indexOf(".")).replace('_', ' ') + " " + s[2])); } pw.flush(); pw.close(); } // end for i */ if (args.length != 7) { System.out.println(args.length); System.out.println( "Usage: java -mx2G eu.fbk.utils.lsa.util.Anvur input threshold size dim idf in-file-csv fields\n\n"); System.exit(1); } // DecimalFormat dec = new DecimalFormat("#.00"); File Ut = new File(args[0] + "-Ut"); File Sk = new File(args[0] + "-S"); File r = new File(args[0] + "-row"); File c = new File(args[0] + "-col"); File df = new File(args[0] + "-df"); double threshold = Double.parseDouble(args[1]); int size = Integer.parseInt(args[2]); int dim = Integer.parseInt(args[3]); boolean rescaleIdf = Boolean.parseBoolean(args[4]); //"author_check"0, "authors"1, "title"2, "year"3, "pubtype"4, "publisher"5, "journal"6, "volume"7, "number"8, "pages"9, "abstract"10, "nauthors", "citedby" String[] labels = { "author_check", "authors", "title", "year", "pubtype", "publisher", "journal", "volume", "number", "pages", "abstract", "nauthors", "citedby" //author_id authors title year pubtype publisher journal volume number pages abstract nauthors citedby }; String name = buildName(labels, args[6]); File bwf = new File(args[5] + name + "-bow.txt"); PrintWriter bw = new PrintWriter( new BufferedWriter(new OutputStreamWriter(new FileOutputStream(bwf), "UTF-8"))); File bdf = new File(args[5] + name + "-bow.csv"); PrintWriter bd = new PrintWriter( new BufferedWriter(new OutputStreamWriter(new FileOutputStream(bdf), "UTF-8"))); File lwf = new File(args[5] + name + "-ls.txt"); PrintWriter lw = new PrintWriter( new BufferedWriter(new OutputStreamWriter(new FileOutputStream(lwf), "UTF-8"))); File ldf = new File(args[5] + name + "-ls.csv"); PrintWriter ld = new PrintWriter( new BufferedWriter(new OutputStreamWriter(new FileOutputStream(ldf), "UTF-8"))); File blwf = new File(args[5] + name + "-bow+ls.txt"); PrintWriter blw = new PrintWriter( new BufferedWriter(new OutputStreamWriter(new FileOutputStream(blwf), "UTF-8"))); File bldf = new File(args[5] + name + "-bow+ls.csv"); PrintWriter bld = new PrintWriter( new BufferedWriter(new OutputStreamWriter(new FileOutputStream(bldf), "UTF-8"))); File logf = new File(args[5] + name + ".log"); PrintWriter log = new PrintWriter( new BufferedWriter(new OutputStreamWriter(new FileOutputStream(logf), "UTF-8"))); //System.exit(0); LSM lsm = new LSM(Ut, Sk, r, c, df, dim, rescaleIdf); LSSimilarity lss = new LSSimilarity(lsm, size); List<String[]> list = readText(new File(args[5])); // author_check authors title year pubtype publisher journal volume number pages abstract nauthors citedby //header for (int i = 0; i < list.size(); i++) { String[] s1 = list.get(i); String t1 = s1[0].toLowerCase(); bw.print("\t"); lw.print("\t"); blw.print("\t"); bw.print(i + "(" + s1[0] + ")"); lw.print(i + "(" + s1[0] + ")"); blw.print(i + "(" + s1[0] + ")"); } // end for i bw.print("\n"); lw.print("\n"); blw.print("\n"); for (int i = 0; i < list.size(); i++) { logger.info(i + "\t"); String[] s1 = list.get(i); String t1 = buildText(s1, args[6]); BOW bow1 = new BOW(t1); logger.info(bow1); Vector d1 = lsm.mapDocument(bow1); d1.normalize(); log.println("d1:" + d1); Vector pd1 = lsm.mapPseudoDocument(d1); pd1.normalize(); log.println("pd1:" + pd1); Vector m1 = merge(pd1, d1); log.println("m1:" + m1); // write the orginal line for (int j = 0; j < s1.length; j++) { bd.print(s1[j]); bd.print("\t"); ld.print(s1[j]); ld.print("\t"); bld.print(s1[j]); bld.print("\t"); } // write the bow, ls, and bow+ls vectors bd.println(d1); ld.println(pd1); bld.println(m1); bw.print(i + "(" + s1[0] + ")"); lw.print(i + "(" + s1[0] + ")"); blw.print(i + "(" + s1[0] + ")"); for (int j = 0; j < i + 1; j++) { bw.print("\t"); lw.print("\t"); blw.print("\t"); } // end for j for (int j = i + 1; j < list.size(); j++) { logger.info(i + "\t" + j); String[] s2 = list.get(j); String t2 = buildText(s2, args[6]); BOW bow2 = new BOW(t2); log.println(i + ":" + j + "(" + s1[0] + ":" + s2[0] + ") t1:" + t1); log.println(i + ":" + j + "(" + s1[0] + ":" + s2[0] + ") t2:" + t2); log.println(i + ":" + j + "(" + s1[0] + ":" + s2[0] + ") bow1:" + bow1); log.println(i + ":" + j + "(" + s1[0] + ":" + s2[0] + ") bow2:" + bow2); Vector d2 = lsm.mapDocument(bow2); d2.normalize(); log.println("d2:" + d2); Vector pd2 = lsm.mapPseudoDocument(d2); pd2.normalize(); log.println("pd2:" + pd2); Vector m2 = merge(pd2, d2); log.println("m2:" + m2); float cosVSM = d1.dotProduct(d2) / (float) Math.sqrt(d1.dotProduct(d1) * d2.dotProduct(d2)); float cosLSM = pd1.dotProduct(pd2) / (float) Math.sqrt(pd1.dotProduct(pd1) * pd2.dotProduct(pd2)); float cosBOWLSM = m1.dotProduct(m2) / (float) Math.sqrt(m1.dotProduct(m1) * m2.dotProduct(m2)); bw.print("\t"); bw.print(dec.format(cosVSM)); lw.print("\t"); lw.print(dec.format(cosLSM)); blw.print("\t"); blw.print(dec.format(cosBOWLSM)); log.println(i + ":" + j + "(" + s1[0] + ":" + s2[0] + ") bow\t" + cosVSM); log.println(i + ":" + j + "(" + s1[0] + ":" + s2[0] + ") ls:\t" + cosLSM); log.println(i + ":" + j + "(" + s1[0] + ":" + s2[0] + ") bow+ls:\t" + cosBOWLSM); } bw.print("\n"); lw.print("\n"); blw.print("\n"); } // end for i logger.info("wrote " + bwf); logger.info("wrote " + bwf); logger.info("wrote " + bdf); logger.info("wrote " + lwf); logger.info("wrote " + ldf); logger.info("wrote " + blwf); logger.info("wrote " + bldf); logger.info("wrote " + logf); ld.close(); bd.close(); bld.close(); bw.close(); lw.close(); blw.close(); log.close(); }
From source file:lambertmrev.LambertMRev.java
/** * @param args the command line arguments *//*from www. jav a2 s.c o m*/ public static void main(String[] args) { // Want to test the Lambert class so you can specify the number of revs for which to compute //System.out.print("this is the frames tutorial \n"); try { Frame inertialFrame = FramesFactory.getEME2000(); TimeScale utc = TimeScalesFactory.getTAI(); AbsoluteDate initialDate = new AbsoluteDate(2004, 01, 01, 23, 30, 00.000, utc); double mu = 3.986004415e+14; double a = 24396159; // semi major axis in meters double e = 0.72831215; // eccentricity double i = Math.toRadians(7); // inclination double omega = Math.toRadians(180); // perigee argument double raan = Math.toRadians(261); // right ascension of ascending node double lM = 0; // mean anomaly Orbit initialOrbit = new KeplerianOrbit(a, e, i, omega, raan, lM, PositionAngle.MEAN, inertialFrame, initialDate, mu); //KeplerianPropagator kepler = new KeplerianPropagator(initialOrbit); // set geocentric positions Vector3D r1 = new Vector3D(-6.88999e3, 3.92763e4, 2.67053e3); Vector3D r2 = new Vector3D(-3.41458e4, 2.05328e4, 3.44315e3); Vector3D r1_site = new Vector3D(4.72599e3, 1.26633e3, 4.07799e3); Vector3D r2_site = new Vector3D(4.70819e3, 1.33099e3, 4.07799e3); // get the topocentric positions Vector3D top1 = Transform.geo2radec(r1.scalarMultiply(1000), r1_site.scalarMultiply(1000)); Vector3D top2 = Transform.geo2radec(r2.scalarMultiply(1000), r2_site.scalarMultiply(1000)); // time of flight in seconds double tof = 3 * 3600; // propagate to 0 and tof Lambert test = new Lambert(); boolean cw = false; int multi_revs = 1; RealMatrix v1_mat; Random randomGenerator = new Random(); PrintWriter out_a = new PrintWriter("out_java_a.txt"); PrintWriter out_e = new PrintWriter("out_java_e.txt"); PrintWriter out_rho1 = new PrintWriter("out_java_rho1.txt"); PrintWriter out_rho2 = new PrintWriter("out_java_rho2.txt"); // start the loop double A, Ecc, rho1, rho2, tof_hyp; long time1 = System.nanoTime(); for (int ll = 0; ll < 1e6; ll++) { rho1 = top1.getZ() / 1000 + 1e-3 * randomGenerator.nextGaussian() * top1.getZ() / 1000; rho2 = top2.getZ() / 1000 + 1e-3 * randomGenerator.nextGaussian() * top2.getZ() / 1000; //tof_hyp = FastMath.abs(tof + 0.1*3600 * randomGenerator.nextGaussian()); // from topo to geo Vector3D r1_hyp = Transform.radec2geo(top1.getX(), top1.getY(), rho1, r1_site); Vector3D r2_hyp = Transform.radec2geo(top2.getX(), top2.getY(), rho2, r2_site); // System.out.println(r1_hyp.scalarMultiply(1000).getNorm()); // System.out.println(r2_hyp.scalarMultiply(1000).getNorm()); // System.out.println(tof/3600); test.lambert_problem(r1_hyp.scalarMultiply(1000), r2_hyp.scalarMultiply(1000), tof, mu, cw, multi_revs); v1_mat = test.get_v1(); Vector3D v1 = new Vector3D(v1_mat.getEntry(0, 0), v1_mat.getEntry(0, 1), v1_mat.getEntry(0, 2)); // System.out.println(v1); PVCoordinates rv1 = new PVCoordinates(r1_hyp.scalarMultiply(1000), v1); Orbit orbit_out = new KeplerianOrbit(rv1, inertialFrame, initialDate, mu); A = orbit_out.getA(); Ecc = orbit_out.getE(); // System.out.println(ll + " - " +A); out_a.println(A); out_e.println(Ecc); out_rho1.println(rho1); out_rho2.println(rho2); } long time2 = System.nanoTime(); long timeTaken = time2 - time1; out_a.close(); out_e.close(); out_rho1.close(); out_rho2.close(); System.out.println("Time taken " + timeTaken / 1000 / 1000 + " milli secs"); // get the truth test.lambert_problem(r1.scalarMultiply(1000), r2.scalarMultiply(1000), tof, mu, cw, multi_revs); v1_mat = test.get_v1(); Vector3D v1 = new Vector3D(v1_mat.getEntry(0, 0), v1_mat.getEntry(0, 1), v1_mat.getEntry(0, 2)); PVCoordinates rv1 = new PVCoordinates(r1.scalarMultiply(1000), v1); Orbit orbit_out = new KeplerianOrbit(rv1, inertialFrame, initialDate, mu); //System.out.println(orbit_out.getA()); } catch (FileNotFoundException ex) { Logger.getLogger(LambertMRev.class.getName()).log(Level.SEVERE, null, ex); } }