List of usage examples for java.io FileNotFoundException toString
public String toString()
From source file:BwaPairedAlignment.java
/** * Code to run in each one of the mappers. This is, the alignment with the corresponding entry data * The entry data has to be written into the local filesystem *//*w w w . j a v a2 s . co m*/ @Override public Iterator<String> call(Integer arg0, Iterator<Tuple2<String, String>> arg1) throws Exception { // STEP 1: Input fastq reads tmp file creation LOG.info("JMAbuin:: Tmp dir: " + this.tmpDir); String fastqFileName1 = this.tmpDir + this.appId + "-RDD" + arg0 + "_1"; String fastqFileName2 = this.tmpDir + this.appId + "-RDD" + arg0 + "_2"; LOG.info("JMAbuin:: Writing file: " + fastqFileName1); LOG.info("JMAbuin:: Writing file: " + fastqFileName2); File FastqFile1 = new File(fastqFileName1); File FastqFile2 = new File(fastqFileName2); FileOutputStream fos1; FileOutputStream fos2; BufferedWriter bw1; BufferedWriter bw2; ArrayList<String> returnedValues = new ArrayList<String>(); //We write the data contained in this split into the two tmp files try { fos1 = new FileOutputStream(FastqFile1); fos2 = new FileOutputStream(FastqFile2); bw1 = new BufferedWriter(new OutputStreamWriter(fos1)); bw2 = new BufferedWriter(new OutputStreamWriter(fos2)); Tuple2<String, String> newFastqRead; while (arg1.hasNext()) { newFastqRead = arg1.next(); bw1.write(newFastqRead._1.toString()); bw1.newLine(); bw2.write(newFastqRead._2.toString()); bw2.newLine(); } bw1.close(); bw2.close(); arg1 = null; returnedValues = this.runAlignmentProcess(arg0, fastqFileName1, fastqFileName2); // Delete temporary files, as they have now been copied to the // output directory LOG.info("JMAbuin:: Deleting file: " + fastqFileName1); FastqFile1.delete(); LOG.info("JMAbuin:: Deleting file: " + fastqFileName2); FastqFile2.delete(); } catch (FileNotFoundException e) { // TODO Auto-generated catch block e.printStackTrace(); LOG.error(e.toString()); } return returnedValues.iterator(); }
From source file:org.flowable.osgi.blueprint.BlueprintBasicTest.java
protected InputStream createTestBundleWithProcessEngineConfiguration() { try {//from w w w.ja v a2s. com return TinyBundles.bundle() .add("OSGI-INF/blueprint/context.xml", new FileInputStream(new File("src/test/resources/config/context.xml"))) .set(Constants.BUNDLE_SYMBOLICNAME, "org.flowable.osgi.config") .set(Constants.DYNAMICIMPORT_PACKAGE, "*").build(); } catch (FileNotFoundException fnfe) { fail("Failure in createTestBundleWithProcessEngineConfiguration " + fnfe.toString()); return null; } }
From source file:byps.test.servlet.MyRemoteStreams.java
@Override public InputStream getVideoCheckSupportByteRange() throws RemoteException { BContentStream stream = null;// w ww . j a va 2 s . co m try { stream = new BContentStreamWrapper(new java.io.File("d:/temp/bypssrv-data/video.mp4")); } catch (FileNotFoundException e) { throw new BException(BExceptionC.INTERNAL, e.toString()); } return stream; }
From source file:org.apache.nutch.collection.CollectionManager.java
/** * Save collections into file//ww w . j a v a 2 s. c o m * * @throws Exception */ public void save() throws IOException { try { final FileOutputStream fos = new FileOutputStream(new File(configfile.getFile())); final Document doc = new DocumentImpl(); final Element collections = doc.createElement(Subcollection.TAG_COLLECTIONS); final Iterator iterator = collectionMap.values().iterator(); while (iterator.hasNext()) { final Subcollection subCol = (Subcollection) iterator.next(); final Element collection = doc.createElement(Subcollection.TAG_COLLECTION); collections.appendChild(collection); final Element name = doc.createElement(Subcollection.TAG_NAME); name.setNodeValue(subCol.getName()); collection.appendChild(name); final Element whiteList = doc.createElement(Subcollection.TAG_WHITELIST); whiteList.setNodeValue(subCol.getWhiteListString()); collection.appendChild(whiteList); final Element blackList = doc.createElement(Subcollection.TAG_BLACKLIST); blackList.setNodeValue(subCol.getBlackListString()); collection.appendChild(blackList); } DomUtil.saveDom(fos, collections); fos.flush(); fos.close(); } catch (FileNotFoundException e) { throw new IOException(e.toString()); } }
From source file:org.montanafoodhub.base.get.OrderHub.java
protected List<Order> readFromFile(Context context) { List<Order> myOrderArr = new ArrayList<Order>(); try {/* w w w .j a va2 s. com*/ // getItem the time the file was last changed here File myFile = new File(context.getFilesDir() + "/" + fileName); SimpleDateFormat sdf = new SimpleDateFormat("MM/dd/yyyy HH:mm:ss"); String lastRefreshTSStr = sdf.format(myFile.lastModified()); Log.w(HubInit.logTag, "Using file (" + fileName + ") last modified on : " + lastRefreshTSStr); lastRefreshTS = sdf.getCalendar(); // create products from the file here InputStream inputStream = context.openFileInput(fileName); if (inputStream != null) { parseCSV(myOrderArr, inputStream); } inputStream.close(); } catch (FileNotFoundException e) { Log.e(HubInit.logTag, "File (" + fileName + ") not found: " + e.toString()); } catch (IOException e) { Log.e(HubInit.logTag, "Can not read file (" + fileName + ") : " + e.toString()); } catch (ParseException pe) { Log.e(HubInit.logTag, "Can't parse Order date (" + fileName + ") : " + pe.toString()); } Log.w(HubInit.logTag, "Number of orders loaded: " + myOrderArr.size()); return myOrderArr; }
From source file:org.montanafoodhub.base.get.CertificationHub.java
protected HashMap<String, Certification> readFromFile(Context context) { HashMap<String, Certification> myCertificationMap = new HashMap<String, Certification>(); try {/*w w w .j a v a2s .c om*/ // getItem the time the file was last changed here File myFile = new File(context.getFilesDir() + "/" + fileName); SimpleDateFormat sdf = new SimpleDateFormat("MM/dd/yyyy HH:mm:ss"); String lastRefreshTSStr = sdf.format(myFile.lastModified()); Log.w(HubInit.logTag, "Using file (" + fileName + ") last modified on : " + lastRefreshTSStr); lastRefreshTS = sdf.getCalendar(); // create products from the file here InputStream inputStream = context.openFileInput(fileName); if (inputStream != null) { parseCSV(myCertificationMap, inputStream); } inputStream.close(); } catch (FileNotFoundException e) { Log.e(HubInit.logTag, "File (" + fileName + ") not found: " + e.toString()); } catch (IOException e) { Log.e(HubInit.logTag, "Can not read file (" + fileName + ") : " + e.toString()); } Log.w(HubInit.logTag, "Number of certifications loaded: " + myCertificationMap.size()); return myCertificationMap; }
From source file:main.java.miro.browser.util.DownloadHandler.java
public void sendDownload(String filepath) { try {//from ww w.j av a 2s .c o m File file = new File(filepath); InputStream stream = new FileInputStream(file); runDownloadService(stream, file.getName()); } catch (FileNotFoundException e) { e.printStackTrace(); log.log(Level.WARNING, e.toString()); } }
From source file:org.montanafoodhub.base.get.ItemHub.java
protected HashMap<String, Item> readFromFile(Context context) { HashMap<String, Item> myItemMap = new HashMap<String, Item>(); try {// w w w .j a v a2s . c om // getItem the time the file was last changed here File myFile = new File(context.getFilesDir() + "/" + fileName); SimpleDateFormat sdf = new SimpleDateFormat("MM/dd/yyyy HH:mm:ss"); String lastRefreshTSStr = sdf.format(myFile.lastModified()); Log.w(HubInit.logTag, "Using file (" + fileName + ") last modified on : " + lastRefreshTSStr); lastRefreshTS = sdf.getCalendar(); // create products from the file here InputStream inputStream = context.openFileInput(fileName); if (inputStream != null) { parseCSV(myItemMap, inputStream); } inputStream.close(); } catch (FileNotFoundException e) { Log.e(HubInit.logTag, "File (" + fileName + ") not found: " + e.toString()); } catch (IOException e) { Log.e(HubInit.logTag, "Can not read file (" + fileName + ") : " + e.toString()); } Log.w(HubInit.logTag, "Number of items loaded: " + myItemMap.size()); return myItemMap; }
From source file:at.ac.tuwien.dsg.depic.depictool.generator.DaaSGenerator.java
private String loadTemplateClass(String templateName) { String templateConstraintClass = ""; String filePath = ""; if (templateName.equals("MetricConstraint")) { filePath = rootPath + "/classes/templateclass/" + "TemplateConstraint.tpl"; } else if (templateName.equals("ConstraintConverter")) { filePath = rootPath + "/classes/templateclass/" + "ConstraintConverter.tpl"; } else if (templateName.equals("ConsumerRequirement")) { filePath = rootPath + "/classes/templateclass/" + "ConsumerRequirement.tpl"; }/* w w w. j a v a2 s. c om*/ FileInputStream fstream = null; try { fstream = new FileInputStream(filePath); // FileInputStream fstream = new FileInputStream("covertype.csv"); } catch (FileNotFoundException ex) { Logger.logInfo(ex.toString()); } DataInputStream in = new DataInputStream(fstream); BufferedReader br = new BufferedReader(new InputStreamReader(in)); String strLine = ""; try { while ((strLine = br.readLine()) != null) { templateConstraintClass = templateConstraintClass + strLine + "\n"; } } catch (IOException ex) { Logger.logInfo(ex.toString()); } return templateConstraintClass; }
From source file:org.sonar.plugins.cxx.compiler.CxxCompilerSensor.java
@Override protected void processReport(final Project project, final SensorContext context, File report) throws javax.xml.stream.XMLStreamException { int countViolations = 0; final CompilerParser parser = getCompilerParser(); final String reportCharset = getParserStringProperty(REPORT_CHARSET_DEF, parser.defaultCharset()); final String reportRegEx = getParserStringProperty(REPORT_REGEX_DEF, parser.defaultRegexp()); final List<CompilerParser.Warning> warnings = new LinkedList<CompilerParser.Warning>(); // Iterate through the lines of the input file CxxUtils.LOG.info("Scanner '" + parser.key() + "' initialized with report '{}'" + ", CharSet= '" + reportCharset + "'", report); try {// ww w . j av a 2 s. co m parser.ParseReport(report, reportCharset, reportRegEx, warnings); for (CompilerParser.Warning w : warnings) { // get filename from file system - e.g. VC writes case insensitive file name to html if (isInputValid(w.filename, w.line, w.id, w.msg)) { if (saveUniqueViolation(project, context, parser.rulesRepositoryKey(), w.filename, w.line, w.id, w.msg)) { countViolations++; } } else { CxxUtils.LOG.warn("C-Compiler warning: {}", w.msg); } } CxxUtils.LOG.info("C-Compiler warnings processed = " + countViolations); } catch (java.io.FileNotFoundException e) { CxxUtils.LOG.error("processReport Exception: " + "report.getName" + " - not processed '{}'", e.toString()); } catch (java.lang.IllegalArgumentException e1) { CxxUtils.LOG.error("processReport Exception: " + "report.getName" + " - not processed '{}'", e1.toString()); } }