List of usage examples for java.io File toURL
@Deprecated public URL toURL() throws MalformedURLException
file: URL. From source file:org.ecoinformatics.seek.R.RExpression.java
public synchronized void fire() throws IllegalActionException { String newline = System.getProperty("line.separator"); super.fire(); boolean graphicsOutputValue = ((BooleanToken) graphicsOutput.getToken()).booleanValue(); boolean displayGraphicsOutputValue = ((BooleanToken) displayGraphicsOutput.getToken()).booleanValue(); saveString = save_nosave.stringValue(); // restoreString = restore_norestore.stringValue(); String graphicsFormatString = graphicsFormat.stringValue(); // following line insures that graphics is pdf if automatically // displayed//from w w w. j a v a 2 s. co m // NOT going to automatically do this anymore. Do what the user asks. //if (displayGraphicsOutputValue) // graphicsFormatString = "pdf"; // force file format to 'pdf' is this is a Mac // NOT going to force PDF for Mac - not sure why this was in place (legacy?) // String lcOSName = System.getProperty("os.name").toLowerCase(); // boolean MAC_OS_X = lcOSName.startsWith("mac os x"); // if (MAC_OS_X) { // graphicsFormatString = "pdf"; // } String nxs = numXPixels.stringValue(); try { (new Integer(nxs)).intValue(); } catch (Exception w) { nxs = "480"; } String nys = numYPixels.stringValue(); try { (new Integer(nys)).intValue(); } catch (Exception w1) { nys = "480"; } String setCWD = "setwd('" + home + "')\n"; graphicsOutputFile = _getUniqueFileName(graphicsFormatString); String graphicsDevice = ""; if (graphicsOutputValue) { // Why not move this stuff up to the try statements for nxs and nys? // It looks like we're doing this twice. --Oliver int nxp = (new Integer(nxs)).intValue(); double nxd = nxp / 72.0; int nyp = (new Integer(nys)).intValue(); double nyd = nyp / 72.0; if (graphicsFormatString.equals("pdf")) { graphicsDevice = "pdf(file = '" + graphicsOutputFile + "'" + ", width = " + nxd + ", height = " + nyd + ")"; } else if (graphicsFormatString.equals("jpeg") || graphicsFormatString.equals("jpg")) { graphicsDevice = "jpeg(filename = '" + graphicsOutputFile + "'" + ", width = " + nxs + ", height = " + nys + ")"; } else if (graphicsFormatString.equals("png")) { graphicsDevice = "png(file = '" + graphicsOutputFile + "'" + ", width = " + nxs + ", height = " + nys + ")"; } else if (graphicsFormatString.equals("bmp")) { graphicsDevice = "bmp(filename = '" + graphicsOutputFile + "'" + ", width = " + nxs + ", height = " + nys + ")"; } else if (graphicsFormatString.equals("tiff") || graphicsFormatString.equals("tif")) { graphicsDevice = "tiff(filename = '" + graphicsOutputFile + "'" + ", width = " + nxs + ", height = " + nys + ")"; } else if (graphicsFormatString.equals("postscript") || graphicsFormatString.equals("ps")) { graphicsOutputFile = _getUniqueFileName("ps"); graphicsDevice = "postscript(file = '" + graphicsOutputFile + "'" + ", width = " + nxd + ", height = " + nyd + ")"; } else if (graphicsFormatString.equals("eps")) { graphicsDevice = "setEPS()\n"; graphicsDevice += "postscript(file = '" + graphicsOutputFile + "'" + ", width = " + nxd + ", height = " + nyd + ")"; } else if (graphicsFormatString.equals("win.metafile") || graphicsFormatString.equals("wmf")) { graphicsOutputFile = _getUniqueFileName("wmf"); graphicsDevice = "win.metafile(filename = '" + graphicsOutputFile + "'" + ", width = " + nxd + ", height = " + nyd + ")"; } else if (graphicsFormatString.equals("svg")) { graphicsDevice = "svg(filename = '" + graphicsOutputFile + "'" + ", width = " + nxd + ", height = " + nyd + ")"; } else if (graphicsFormatString.equals("xfig") || graphicsFormatString.equals("fig")) { graphicsOutputFile = _getUniqueFileName("fig"); graphicsDevice = "xfig(file = '" + graphicsOutputFile + "'" + ", width = " + nxd + ", height = " + nyd + ")"; } else if (graphicsFormatString.equals("ghostscript bitmap type pngalpha")) { graphicsDevice = "bitmap(file = '" + graphicsOutputFile + "', type = \"pngalpha\", width = " + nxd + ", height = " + nyd + ")"; } else if (graphicsFormatString.equals("ghostscript bitmap type png16m")) { graphicsDevice = "bitmap(file = '" + graphicsOutputFile + "', type = \"png16m\", width = " + nxd + ", height = " + nyd + ")"; } else if (graphicsFormatString.equals("ghostscript bitmap type png256")) { graphicsDevice = "bitmap(file = '" + graphicsOutputFile + "', type = \"png256\", width = " + nxd + ", height = " + nyd + ")"; } } List ipList = inputPortList(); Iterator iter_i = ipList.iterator(); opList = outputPortList(); iter_o = opList.iterator(); String RPortInfo = ""; RPortInfo = setCWD + graphicsDevice + "\n"; Token at; String temp1; while (iter_i.hasNext()) { TypedIOPort tiop = (TypedIOPort) iter_i.next(); int multiPortSize = tiop.numberOfSources(); List sourcePorts = tiop.sourcePortList(); for (int i = 0; i < multiPortSize; i++) { try { if (tiop.hasToken(i)) { String finalPortName = tiop.getName(); String sourcePortName = ((TypedIOPort) sourcePorts.get(i)).getName(); String tempPortName = tiop.getName(); String temp = tiop.getName(); Token token = tiop.get(i); String token_type_string = token.getType().toString(); String token_class_name = token.getType().getTokenClass().getName(); // if this is a multiport, use the upstream source for // the variable name if (tiop.isMultiport()) { temp = temp + i; tempPortName = temp; } // log.debug("token_type_string - " + // token_type_string); // log.debug("token_class_name - " + // token_class_name); // check token type and convert to R appropriately if (token_type_string.equals("string")) { // check for special strings that indicate dataframe // file reference at = (Token) token; temp1 = at.toString(); temp1 = temp1.substring(1, temp1.length() - 1); // remove // quotes if (temp1.startsWith("_dataframe_:")) { // assume that the string for a dataframe file // reference is of the form // '_dataframe_:"+<filename> temp1 = temp1.substring(12); // should be // filename // temp = "`" + temp + "` <- " + // "read.table(file='"+temp1+"')"; // RPortInfo = RPortInfo + temp + "\n"; // use binary version that was serialized RPortInfo = RPortInfo + "conn <- file('" + temp1 + "', 'rb');\n`" + temp + "` <- unserialize(conn);\n" + "close(conn);\n"; // remove the transfer file when we are done // consuming it // this is problematic when dataframes are // output to multiple sinks! // String removeCommand = "file.remove('" + // temp1 + "')"; // RPortInfo = RPortInfo + removeCommand + "\n"; continue; // stop for this token and go to the // next } else if (temp1.startsWith("_object_:")) { // assume that the string for an object file // reference is of the form // '_object_:"+<filename> temp1 = temp1.substring(9); // should be // filename // use binary version that was serialized RPortInfo = RPortInfo + "conn <- file('" + temp1 + "', 'rb');\n`" + temp + "` <- unserialize(conn);\n" + "close(conn);\n"; // remove the transfer file when we are done // consuming it // this is problematic when objects are output // to multiple sinks! // String removeCommand = "file.remove('" + // temp1 + "')"; // RPortInfo = RPortInfo + removeCommand + "\n"; continue; // stop for this token and go to the // next } } if (token instanceof RecordToken) { String Rcommands = _recordToDataFrame((RecordToken) token, temp); Rcommands = _breakIntoLines(Rcommands); RPortInfo = RPortInfo + Rcommands + "\n"; } // convert Kepler matrices to R matrices else if ((token_class_name.indexOf("IntMatrixToken") > -1) || (token_class_name.indexOf("DoubleMatrixToken") > -1) || (token_class_name.indexOf("BooleanMatrixToken") > -1)) { int rows = ((MatrixToken) token).getRowCount(); int cols = ((MatrixToken) token).getColumnCount(); temp1 = token.toString(); temp1 = temp1.replace('\\', '/'); temp1 = temp1.replace('[', '('); temp1 = temp1.replace(']', ')'); temp1 = temp1.replace(';', ','); temp1 = temp1.replace('"', '\''); // assume that the token's string value might be // 'nil' for a missing value temp1 = temp1.replaceAll("nil", "NA"); // TO DO:if string is long, should create a temp // file for passing array data temp = "`" + temp + "` <- matrix(c" + temp1 + ", nrow=" + rows + ",ncol=" + cols + ")"; temp = _breakIntoLines(temp); RPortInfo = RPortInfo + temp + "\n"; } else if ((token_type_string.equals("double")) || (token_type_string.equals("int")) || (token_type_string.equals("string"))) { at = (Token) token; temp1 = at.toString(); // we need to check here if we are passing a string // like '/t' (tab) // Note that quotes are returned around string // tokens // The string "/t" is particularly meaningful when // passed as a seperator // for R expressions -- DFH April 19 // Note that previous versions of PTII returned // slightly different format // strings, so this was not necessary. if (!temp1.equals("\"\\t\"")) { temp1 = temp1.replace('\\', '/'); // assume that the token's string value might be // 'nil' for a missing value temp1 = temp1.replaceAll("nil", "NA"); } temp = "`" + temp + "` <- " + temp1; RPortInfo = RPortInfo + temp + "\n"; } else if ((token_type_string.equals("boolean"))) { at = (Token) token; temp1 = at.toString(); // ensure uppercase for boolean temp1 = temp1.toUpperCase(); temp = "`" + temp + "` <- " + temp1; RPortInfo = RPortInfo + temp + "\n"; } else if ((token_type_string.equals("float"))) { FloatToken ft = (FloatToken) token; DoubleToken dt = new DoubleToken(ft.doubleValue()); at = (Token) token; temp1 = dt.toString(); // we need to check here if we are passing a string // like '/t' (tab) // Note that quotes are returned around string // tokens // The string "/t" is particularly meaningful when // passed as a seperator // for R expressions -- DFH April 19 // Note that previous versions of PTII returned // slightly different format // strings, so this was not necessary. if (!temp1.equals("\"\\t\"")) { temp1 = temp1.replace('\\', '/'); // assume that the token's string value might be // 'nil' for a missing value temp1 = temp1.replaceAll("nil", "NA"); } temp = "`" + temp + "` <- " + temp1; RPortInfo = RPortInfo + temp + "\n"; } else if ((token_type_string.equals("{double}")) || (token_type_string.equals("{int}")) || (token_type_string.startsWith("arrayType(double")) || (token_type_string.startsWith("arrayType(int")) || (token_type_string.startsWith("arrayType(niltype")) || (token_type_string.startsWith("arrayType(arrayType(double")) || (token_type_string.startsWith("arrayType(arrayType(int"))) { // token is an arrayToken !!! at = (Token) token; temp1 = at.toString(); temp1 = temp1.replace('\\', '/'); temp1 = temp1.replaceFirst("\\{", "("); temp1 = temp1.replaceAll("\\{", "c("); temp1 = temp1.replace('}', ')'); temp1 = temp1.replace('"', '\''); // assume that the token's string value might be // 'nil' for a missing value temp1 = temp1.replaceAll("nil", "NA"); // if string is long, create a temp file for passing // array data if (temp1.length() > maxCommandLineLength && (!token_type_string.startsWith("arrayType(arrayType(double")) && (!token_type_string.startsWith("arrayType(arrayType(int"))) { temp1 = temp1.replace('(', ' '); temp1 = temp1.replace(')', ' '); String filename = _writeDataFile(temp1); temp = "`" + temp + "` <- scan('" + filename + "', sep=',')"; temp = temp + "\n" + "file.remove('" + filename + "')"; RPortInfo = RPortInfo + temp + "\n"; } else { // otherwise use the modified string if (token_type_string.startsWith("arrayType(arrayType(int") || token_type_string.startsWith("arrayType(arrayType(double")) { temp = "`" + temp + "` <- list" + temp1; } else { temp = "`" + temp + "` <- c" + temp1; } temp = _breakIntoLines(temp); RPortInfo = RPortInfo + temp + "\n"; } } else if ((token_type_string.equals("{float}")) || (token_type_string.startsWith("arrayType(float")) || token_type_string.startsWith("arrayType(arrayType(float")) { // token is an arrayToken !!! ArrayToken arrtok = (ArrayToken) token; StringBuffer buffer = new StringBuffer("{"); for (int j = 0; j < arrtok.length(); j++) { FloatToken ft = (FloatToken) arrtok.getElement(j); buffer.append(new DoubleToken(ft.doubleValue()).toString()); if (j < (arrtok.length() - 1)) { buffer.append(", "); } } buffer.append("}"); temp1 = buffer.toString(); temp1 = temp1.replace('\\', '/'); temp1 = temp1.replaceFirst("\\{", "("); temp1 = temp1.replaceAll("\\{", "c("); temp1 = temp1.replace('}', ')'); temp1 = temp1.replace('"', '\''); // assume that the token's string value might be // 'nil' for a missing value temp1 = temp1.replaceAll("nil", "NA"); // if string is long, create a temp file for passing // array data if (temp1.length() > maxCommandLineLength && (!token_type_string.startsWith("arrayType(arrayType(float"))) { temp1 = temp1.replace('(', ' '); temp1 = temp1.replace(')', ' '); String filename = _writeDataFile(temp1); temp = "`" + temp + "` <- scan('" + filename + "', sep=',')"; temp = temp + "\n" + "file.remove('" + filename + "')"; RPortInfo = RPortInfo + temp + "\n"; } else { // otherwise use the modified string if (token_type_string.startsWith("arrayType(arrayType(float")) { temp = "`" + temp + "` <- list" + temp1; } else { temp = "`" + temp + "` <- c" + temp1; } temp = _breakIntoLines(temp); RPortInfo = RPortInfo + temp + "\n"; } } else if ((token_type_string.equals("{string}")) || (token_type_string.startsWith("arrayType(string") || (token_type_string.startsWith("arrayType(arrayType(string")))) { // token is an arrayToken !!! at = (Token) token; temp1 = at.toString(); temp1 = temp1.replace('\\', '/'); temp1 = temp1.replaceFirst("\\{", "("); temp1 = temp1.replaceAll("\\{", "c("); temp1 = temp1.replace('}', ')'); temp1 = temp1.replace('"', '\''); // assume that the token's string value might be // 'nil' for a missing value temp1 = temp1.replaceAll("nil", "NA"); // if string is long, create a temp file for passing // array data ONLY if ((temp1.length() > maxCommandLineLength) && (!token_type_string.startsWith("arrayType(arrayType(string"))) { temp1 = temp1.replace('(', ' '); temp1 = temp1.replace(')', ' '); String filename = _writeDataFile(temp1); temp = "`" + temp + "` <- scan('" + filename + "', what='character', sep=',', strip.white=TRUE)"; temp = temp + "\n" + "file.remove('" + filename + "')"; RPortInfo = RPortInfo + temp + "\n"; } else { // otherwise use the modified string //for arrays of arrays, use list() if (token_type_string.startsWith("arrayType(arrayType(string")) { temp = "`" + temp + "` <- list" + temp1; } else { temp = "`" + temp + "` <- c" + temp1; } temp = _breakIntoLines(temp); RPortInfo = RPortInfo + temp + "\n"; } } else if (token_type_string.equals("niltype")) { at = token; temp1 = at.toString(); temp1 = temp1.replaceAll("nil", "NA"); temp = "`" + temp + "` <- " + temp1; RPortInfo = RPortInfo + temp + "\n"; } // set metadata on the R objects // String metadataCommand = null; if (tiop.isMultiport()) { // set the metadata on each list item // ("tempPortName") before adding it to the list /* metadataCommand = */_createMetadataCommand(tempPortName, "name", sourcePortName); } else { // just set the metadata attribute for the final // variable name /* metadataCommand = */_createMetadataCommand(finalPortName, "name", sourcePortName); } // add the metadata attribute to the R object // leinfelder, 4/14/2008: // do not include the metadata as it introduces // incompatibility with // certain R methods that expect attributeless objects // (barplot(vector)) // RPortInfo = RPortInfo + metadataCommand + "\n"; // use lists for making multiport input available in R if (tiop.isMultiport()) { String commandList = null; if (i == 0) { // create list commandList = "`" + finalPortName + "` <- list(" + tempPortName + ")"; } else if (i > 0) { // append to list commandList = "`" + finalPortName + "` <- c(" + finalPortName + ", list(" + tempPortName + ") )"; } RPortInfo = RPortInfo + commandList + "\n"; } } } catch (IllegalActionException iae) { // just continue (port is probably not connected) } } // for multiport } // log.debug("RPortInfo: "+RPortInfo); // The following command casues R to output a series of 4 dashes which // are used as a marker // Any R output after this marker is used to construct information for // the actor output // ports. This information is removed from the R output text displayed // to the user. String r_out = "cat('----\\n')\n"; // Ensure that output is echoed from this point on // We don't need to echo before cat('----\\n') because the cat statement forces output. // This way, the options(echo = TRUE) isn't sent to the "output" port r_out += "options(echo = TRUE)\n"; // The following creates an R function called 'myput' to output port // info to output ports // r_out = r_out + // "if (class(x)=='data.frame') {write.table(x,file='"+df_fn+"');cat('_dataframe_:"+df_fn+"')}\n"; r_out = r_out + "myput <- function(x, filename) {\n" // I'm wrapping the serialization into the doserialize function // because it's gotten big. Unique filename generation is // done here because this is where file creation is actually done. // This code relies on the replaceAll code and the added - in the // auto-generated .sav filename. Remember that a \ in the regular // expression is quadrupled for passing through both Java and R. + " doserialize <- function(x, filename) {\n" + " if (file.exists(filename)) {" + " path <- dirname(filename); " + " filename <- basename(filename); " + " base <- sub('^(.*-)([0-9*])\\\\.(.*)$', '\\\\1', filename); " + " ext <- sub('^(.*-)([0-9*])\\\\.(.*)$', '\\\\3', filename); " + " dir_base_ext <- dir(pattern = paste(base, '[0-9]*\\\\.', ext, sep = '')); " + " cnt <- max(as.numeric(sub('^(.*-)([0-9*])\\\\.(.*)$', '\\\\2', dir_base_ext)), na.rm = TRUE) + 1; " + " filename <- file.path(path, paste(base, cnt, '.', ext, sep = ''))" + " }\n" + " conn <- file(filename, 'wb');" + " serialize(x, conn);" + " close(conn);" + " filename" + " }\n" // use a binary serialization for data frames + " if (class(x)=='data.frame') {cat('_dataframe_:', doserialize(x, filename), '\\n', sep = '')}\n" + " else if (class(x)=='matrix') {cat('_matrix_:',deparse(x, control=c('keepNA', 'showAttributes')), '\\n', sep = '') }\n" + " else if (mode(x)=='numeric' && substr(deparse(x)[1], 1, 9) != \"structure\") {dput(as.double(x), control = NULL)}\n" + " else if (mode(x)=='character' && substr(deparse(x)[1], 1, 9) != \"structure\") {dput(x)}\n" + " else if (mode(x)=='logical' && substr(deparse(x)[1], 1, 9) != \"structure\") {dput(x)}\n" // use R serialization for other unknown objects + " else {cat('_object_:', doserialize(x, filename), '\\n', sep = '')}" + "}\n"; // Controlled newline test r_out = r_out + "cat(\"before newline\\nafter newline\\n\")\n"; while (iter_o.hasNext()) { TypedIOPort tiop_o = (TypedIOPort) iter_o.next(); String temp_o = tiop_o.getName(); // now need to create an R script that returns info about an R // object with the // port name for use in creating Kepler output object if ((!temp_o.equals("output")) && (!temp_o.equals("graphicsFileName"))) { String df_fn = _getUniqueFileName(temp_o, "sav"); String temp_o_escaped = temp_o; // Doing some basic escaping for the exists statement, // although I'm not 100% sure all of these characters // might occur. --Oliver temp_o_escaped = temp_o_escaped.replace("\\", "\\\\"); temp_o_escaped = temp_o_escaped.replace("'", "\'"); r_out = r_out + "if(exists('" + temp_o_escaped + "', .GlobalEnv)) {" + "cat(\"portName: " + temp_o + "\\nvectorVal: \"); " + "myput(get(\"" + temp_o_escaped + "\", .GlobalEnv),'" + df_fn + "'); " + "cat(\"endVectorVal\\n\")" + "}\n"; } } String script = expression.getExpression(); script = RPortInfo + script + "\n" + r_out + "\nquit()\n"; try { _exec(); } catch (Exception w) { log.error("Error in _exec()"); } String outputString = ""; String errorString = ""; String noRErrorMessage = "There has been a problem running the R script!\n" + "It may be due to an error in your script, it may be that R is not\n" + "installed on your system, or it may not be on your path and cannot\n" + "be located by Kepler. Please make sure R is installed and the\n" + "R command line executable is in the path." + "For more information, see \n section 8.2.2 of the Kepler User Manual."; try { _inputBufferedWriter.write(script); _inputBufferedWriter.flush(); _inputBufferedWriter.close(); } catch (IOException ex) { log.error("IOException while executing R script."); // Commenting out this loop--this can cause an infinite loop on XP, // (when R is not on user's PATH), which keeps the noRErrorMessage // from ever showing. See bugs #4985 and #5025. //while(outputString.equals("")) { // outputString = _outputGobbler.getAndReset(); // errorString = _errorGobbler.getAndReset(); // log.debug("R standard output: " + newline + outputString); // log.debug("R standard error: " + newline + errorString); //} throw new IllegalActionException(this, ex, "Problem writing input. " + noRErrorMessage); } catch (NullPointerException npe) { throw new IllegalActionException(this, npe, noRErrorMessage); } try { int result = _process.waitFor(); log.debug("Process complete: " + result); if (result != 0) throw new IllegalActionException(this, "R returned with value " + result + ", likely caused " + newline + "by an error while executing the script."); } catch (IllegalActionException e) { log.error(e.getMessage()); while (outputString.equals("")) { outputString = _outputGobbler.getAndReset(); errorString = _errorGobbler.getAndReset(); log.debug("R standard output: " + newline + outputString); log.error("R standard error: " + newline + errorString); } throw e; } catch (Exception www) { log.error("Exception waiting for _process to end!"); } while (outputString.equals("")) { try { Thread.sleep(100); } catch (Exception e) { log.error("Error in TestApp while sleeping!"); } outputString = _outputGobbler.getAndReset(); errorString = _errorGobbler.getAndReset(); int loc = outputString.lastIndexOf("cat('----\\n')"); int loc1 = outputString.lastIndexOf("----"); String outputStringDisp = outputString; if (loc1 > -1) { if (loc < 0) { loc = loc1; } outputStringDisp = outputString.substring(0, loc); String rem = outputString.substring(loc1, outputString.length()); _getOutput(rem); } output.send(0, new StringToken(outputStringDisp + "\n" + errorString)); if (displayGraphicsOutputValue && (!graphicsDevice.equals(""))) { try { File fout = new File(home + graphicsOutputFile); URL furl = fout.toURL(); BrowserLauncher.openURL(furl.toString()); } catch (Exception e) { log.warn("problem launching browser:" + e); } } if (!graphicsDevice.equals("")) graphicsFileName.send(0, new StringToken(home + graphicsOutputFile)); } }
From source file:org.talend.repository.ui.wizards.exportjob.scriptsmanager.JobJavaScriptsManager.java
protected void addSourceCode(ExportFileResource[] allResources, ProcessItem processItem, boolean needSource, ExportFileResource resource, String... selectedJobVersion) { // getItemResource(processItem, resource, basePath, selectedJobVersion); // super.addSource(processItem, needSource, resource, basePath, selectedJobVersion); // Get java src if (!needSource) { return;/*from w w w .ja va 2s .co m*/ } try { String projectName = getCorrespondingProjectName(processItem); String jobName = processItem.getProperty().getLabel(); String jobVersion = processItem.getProperty().getVersion(); if (!isMultiNodes() && selectedJobVersion != null && selectedJobVersion.length == 1) { jobVersion = selectedJobVersion[0]; } String jobFolderName = JavaResourcesHelper.getJobFolderName(jobName, jobVersion); IPath path = getSrcRootLocation(); path = path.append(projectName).append(jobFolderName); FilenameFilter filter = new FilenameFilter() { @Override public boolean accept(File dir, String name) { return name.toLowerCase().endsWith(".java"); //$NON-NLS-1$ } }; List<URL> javaFileUrls = new ArrayList<URL>(); File file = path.toFile(); if (file.exists() && file.isDirectory()) { for (File curFile : file.listFiles(filter)) { javaFileUrls.add(FileLocator.toFileURL(curFile.toURL())); } } resource.addResources( JOB_SOURCE_FOLDER_NAME + PATH_SEPARATOR + projectName + PATH_SEPARATOR + jobFolderName, javaFileUrls); } catch (Exception e) { ExceptionHandler.process(e); } }
From source file:org.danann.cernunnos.io.FileIteratorTask.java
public void perform(TaskRequest req, TaskResponse res) { String d = (String) dir.evaluate(req, res); File baseDir = new File(d); if (!baseDir.exists()) { // We're going to assume this won't happen // except where something's really wrong... String msg = "The specified DIR does not exist: " + d; log.error(msg);//from w w w . ja v a 2 s .c om throw new RuntimeException(msg); } String incl = (String) includes.evaluate(req, res); String[] inclTokens = LIST_DELIM.split(incl); List<String>[] inclStacks = new List[inclTokens.length]; for (int i = 0; i < inclTokens.length; i++) { inclStacks[i] = Arrays.asList(PATH_DELIM.split(inclTokens[i])); } String excl = "[Not Evaluated]"; Set<File> fileSet = getMatchingDescendants(baseDir, inclStacks); if (excludes != null) { excl = (String) excludes.evaluate(req, res); String[] exclTokens = LIST_DELIM.split(excl); List<String>[] exclStacks = new List[exclTokens.length]; for (int i = 0; i < exclTokens.length; i++) { exclStacks[i] = Arrays.asList(PATH_DELIM.split(exclTokens[i])); } Set<File> exclSet = getMatchingDescendants(baseDir, exclStacks); fileSet.removeAll(exclSet); } // Report on the # of matched files... if (log.isTraceEnabled()) { StringBuilder msg = new StringBuilder(); msg.append("FileIteratorTask details:").append("\n\t\tDIR=").append(d).append("\n\t\tINCLUDES=") .append(incl).append("\n\t\tEXCLUDES=").append(excl).append("\n\t\tfound ") .append(fileSet.size()).append(" matching files\n"); log.trace(msg.toString()); } // Set the default CONTEXT for subtasks... final URL contextUrl; try { contextUrl = baseDir.toURL(); } catch (MalformedURLException mue) { throw new RuntimeException("Failed to convert dir attribute into URL: " + baseDir, mue); } res.setAttribute(Attributes.CONTEXT, contextUrl.toString()); // Iterate over the results, setting each one to the specified request attribute... String name = (String) attribute_name.evaluate(req, res); String mask; try { mask = baseDir.getCanonicalPath(); } catch (IOException ioe) { throw new RuntimeException("Could not convert dir attribute into canonical path: " + baseDir, ioe); } if (!mask.endsWith(File.separator)) { mask = mask + File.separator; } for (File f : fileSet) { final String canonicalPath; try { canonicalPath = f.getCanonicalPath(); } catch (IOException ioe) { throw new RuntimeException("Could not convert file into canonical path: " + f, ioe); } String location = canonicalPath.substring(mask.length()); res.setAttribute(name, location); super.performSubtasks(req, res); } }
From source file:org.talend.repository.ui.wizards.exportjob.scriptsmanager.JobJavaScriptsManager.java
protected List<URL> getLib(List<String> libs, Boolean needLib) { List<URL> list = new ArrayList<URL>(); if (!needLib) { return list; }/*from w w w .j a va2 s. com*/ try { // IWorkspaceRoot root = ResourcesPlugin.getWorkspace().getRoot(); // IProject prj = root.getProject(JavaUtils.JAVA_PROJECT_NAME); // IJavaProject project = JavaCore.create(prj); // IPath libPath = project.getResource().getLocation().append(JavaUtils.JAVA_LIB_DIRECTORY); // File file = libPath.toFile(); // File[] files = file.listFiles(new FilenameFilter() { // // public boolean accept(File dir, String name) { // return name.toLowerCase().endsWith(".jar") || name.toLowerCase().endsWith(".properties") //$NON-NLS-1$ //$NON-NLS-2$ // || name.toLowerCase().endsWith(".zip") ? true : false; //$NON-NLS-1$ // } // }); // // for (int i = 0; i < files.length; i++) { // File tempFile = files[i]; // try { // if (libs.contains(tempFile.getName())) { // list.add(tempFile.toURL()); // } // } catch (MalformedURLException e) { // ExceptionHandler.process(e); // } // } org.talend.core.model.general.Project projecdddt = ProjectManager.getInstance().getCurrentProject(); IProject fsProject = null; try { fsProject = ResourceUtils.getProject(projecdddt); } catch (PersistenceException e2) { ExceptionHandler.process(e2); } IPath temPath = fsProject.getLocation().append(File.separator + "temp"); //$NON-NLS-1$ ILibraryManagerService repositoryBundleService = CorePlugin.getDefault().getRepositoryBundleService(); if (repositoryBundleService != null) { repositoryBundleService.retrieve(libs, temPath.toString()); } File file = temPath.toFile(); File[] files = file.listFiles(new FilenameFilter() { @Override public boolean accept(File dir, String name) { return name.toLowerCase().endsWith(FileConstants.JAR_FILE_SUFFIX) || name.toLowerCase().endsWith(FileConstants.PROPERTIES_FILE_SUFFIX) || name.toLowerCase().endsWith(FileConstants.ZIP_FILE_SUFFIX) ? true : false; } }); for (File tempFile : files) { try { if (libs.contains(tempFile.getName())) { list.add(tempFile.toURL()); } } catch (MalformedURLException e) { ExceptionHandler.process(e); } } } catch (Exception e) { ExceptionHandler.process(e); } return list; }
From source file:org.talend.repository.ui.wizards.exportjob.scriptsmanager.JobJavaScriptsManager.java
/** * Gets required java jars.//from w ww . j a v a 2 s .co m * * @param process * * @param boolean1 * @return */ protected List<URL> getExternalLibraries(boolean needLibraries, ExportFileResource[] process, final Set<String> neededLibraries) { List<URL> list = new ArrayList<URL>(); if (!needLibraries) { return list; } IFolder libFolder = null; if (GlobalServiceRegister.getDefault().isServiceRegistered(IRunProcessService.class)) { IRunProcessService processService = (IRunProcessService) GlobalServiceRegister.getDefault() .getService(IRunProcessService.class); ITalendProcessJavaProject talendProcessJavaProject = processService.getTalendProcessJavaProject(); if (talendProcessJavaProject != null) { libFolder = talendProcessJavaProject.getLibFolder(); } } if (libFolder == null) { return list; } File file = libFolder.getLocation().toFile(); File[] files = file.listFiles(FilesUtils.getAcceptModuleFilesFilter()); // Lists all the needed jar files Set<String> listModulesReallyNeeded = new HashSet<String>(); if (neededLibraries == null) { // in case export as been done with option "not recompile", then libraires can't be retrieved when build. IDesignerCoreService designerService = RepositoryPlugin.getDefault().getDesignerCoreService(); for (ExportFileResource resource : process) { ProcessItem item = (ProcessItem) resource.getItem(); String version = item.getProperty().getVersion(); if (!isMultiNodes() && this.getSelectedJobVersion() != null) { version = this.getSelectedJobVersion(); } ProcessItem selectedProcessItem; if (resource.getNode() != null) { selectedProcessItem = ItemCacheManager.getProcessItem(resource.getNode().getRoot().getProject(), item.getProperty().getId(), version); } else { // if no node given, take in the current project only selectedProcessItem = ItemCacheManager.getProcessItem(item.getProperty().getId(), version); } IProcess iProcess = designerService.getProcessFromProcessItem(selectedProcessItem); Set<String> processNeededLibraries = iProcess.getNeededLibraries(true); if (processNeededLibraries != null) { listModulesReallyNeeded.addAll(processNeededLibraries); } } } else { listModulesReallyNeeded.addAll(neededLibraries); } // jar from routines List<IRepositoryViewObject> collectRoutines = new ArrayList<IRepositoryViewObject>(); boolean useBeans = false; if (GlobalServiceRegister.getDefault().isServiceRegistered(ICamelDesignerCoreService.class)) { ICamelDesignerCoreService camelService = (ICamelDesignerCoreService) GlobalServiceRegister.getDefault() .getService(ICamelDesignerCoreService.class); if (camelService.isInstanceofCamel(process[0].getItem())) { useBeans = true; } } String include = null; if (useBeans) { include = USER_BEANS_PATH; } else { include = USER_ROUTINES_PATH; } collectRoutines.addAll(collectRoutines(process, include)); collectRoutines.addAll(collectRoutines(process, USER_PIGUDF_PATH)); for (IRepositoryViewObject object : collectRoutines) { Item item = object.getProperty().getItem(); if (item instanceof RoutineItem) { RoutineItem routine = (RoutineItem) item; EList imports = routine.getImports(); for (Object o : imports) { IMPORTType type = (IMPORTType) o; listModulesReallyNeeded.add(type.getMODULE()); } } } if (Log4jPrefsSettingManager.getInstance().isLog4jEnable()) { addLog4jToJarList(listModulesReallyNeeded); } for (File tempFile : files) { try { if (listModulesReallyNeeded.contains(tempFile.getName())) { list.add(tempFile.toURL()); } } catch (MalformedURLException e) { ExceptionHandler.process(e); } } return list; // List<URL> libraries = new ArrayList<URL>(); // if (needLibraries) { // try { // ILibrariesService service = CorePlugin.getDefault().getLibrariesService(); // libraries = service.getTalendRoutines(); // } catch (Exception e) { // ExceptionHandler.process(e); // } // } // return libraries; }
From source file:org.apache.axis2.jaxws.description.impl.OperationDescriptionImpl.java
/** * This method will drive the building of AttachmentDescription objects for the * operation input/output messages in the WSDL. * *//*w w w. ja v a 2 s .c om*/ private void buildAttachmentInformation() { if (log.isDebugEnabled()) { log.debug("Start buildAttachmentInformation"); } // Only building attachment info if we find a full WSDL if (this.getEndpointInterfaceDescriptionImpl().getEndpointDescriptionImpl().isWSDLFullySpecified()) { if (log.isDebugEnabled()) { log.debug("A full WSDL is available. Query the WSDL binding for the " + "AttachmentDescription information."); } DescriptionUtils.getAttachmentFromBinding(this, this.getEndpointInterfaceDescriptionImpl().getEndpointDescriptionImpl().getWSDLBinding()); } else { if (log.isDebugEnabled()) { log.debug("The WSDL is not available. Looking for @WebService wsdlLocation."); } // Try getting a WSDL String wsdlLocation = this.getEndpointInterfaceDescriptionImpl().getEndpointDescriptionImpl() .getAnnoWebServiceWSDLLocation(); if (wsdlLocation == null || wsdlLocation.length() == 0) { if (log.isDebugEnabled()) { log.debug("@WebService wsdlLocation is not specified. " + "Processing continues without AttachmentDescription information"); } } else { if (log.isDebugEnabled()) { log.debug("@WebService wsdlLocation is " + wsdlLocation); } Definition def = null; WSDL4JWrapper wsdl4j = null; try { File file = new File(wsdlLocation); URL url = file.toURL(); wsdl4j = new WSDL4JWrapper(url, true, 2); // In this context, limit the wsdl memory def = wsdl4j.getDefinition(); } catch (Throwable t) { if (log.isDebugEnabled()) { log.debug("Error occurred while loading WSDL. " + "Procesing continues without AttachmentDescription " + "information. " + t); } } if (def != null) { // Set the WSDL on the server this.getEndpointInterfaceDescriptionImpl().getEndpointDescriptionImpl() .getServiceDescriptionImpl().setWsdlWrapper(wsdl4j); if (log.isDebugEnabled()) { log.debug("WSDL Definition is loaded. Get the WSDL Binding."); } Binding binding = this.getEndpointInterfaceDescriptionImpl().getEndpointDescriptionImpl() .getWSDLBinding(); if (binding == null) { if (log.isDebugEnabled()) { log.debug("WSDL Binding was not found for serviceName=" + this.getEndpointInterfaceDescription().getEndpointDescription() .getServiceQName() + " and portName=" + this.getEndpointInterfaceDescription() .getEndpointDescription().getPortQName()); } } else { if (log.isDebugEnabled()) { log.debug("Query Binding for AttachmentDescription Information"); } DescriptionUtils.getAttachmentFromBinding(this, binding); } } } } if (log.isDebugEnabled()) { log.debug("End buildAttachmentInformation"); } }
From source file:org.talend.repository.ui.wizards.exportjob.scriptsmanager.JobJavaScriptsManager.java
/** * User may delete some contexts after generating the context files. So we will only export those files that match * any existing context name. See bug 0003568: Three contexts file exported, while only two contexts in the job. * //from w w w . ja v a 2 s .c o m * @param listFiles The generated context files. * @param processItem The current process item that will be exported. * @return An url list of context files. * @throws MalformedURLException */ private List<URL> getActiveContextFiles(File[] listFiles, ProcessItem processItem) throws MalformedURLException { List<URL> contextFileUrls = new ArrayList<URL>(); try { // get all context name from process Set<String> contextNames = new HashSet<String>(); for (String contextName : LastGenerationInfo.getInstance() .getContextPerJob(processItem.getProperty().getId(), processItem.getProperty().getVersion())) { contextNames.add(contextName.replace(" ", "")); //$NON-NLS-1$ //$NON-NLS-2$ } for (File file : listFiles) { String fileName = file.getName(); // remove file extension fileName = fileName.substring(0, fileName.lastIndexOf('.')); if (contextNames.contains(fileName)) { // if the file match any existing context, add this file to list contextFileUrls.add(file.toURL()); } } } catch (Exception e) { ExceptionHandler.process(e); } return contextFileUrls; }
From source file:dalma.container.ClassLoaderImpl.java
/** * Add a file to the path. This classloader reads the manifest, if * available, and adds any additional class path jars specified in the * manifest./*from w ww . jav a 2 s . com*/ * * @param pathComponent the file which is to be added to the path for * this class loader * * @throws IOException if data needed from the file cannot be read. */ public void addPathFile(File pathComponent) throws IOException { pathComponents.addElement(pathComponent); if (pathComponent.isDirectory()) { return; } String absPathPlusTimeAndLength = pathComponent.getAbsolutePath() + pathComponent.lastModified() + "-" + pathComponent.length(); String classpath = pathMap.get(absPathPlusTimeAndLength); if (classpath == null) { ZipFile jarFile = null; InputStream manifestStream = null; try { jarFile = new ZipFile(pathComponent); manifestStream = jarFile.getInputStream(new ZipEntry("META-INF/MANIFEST.MF")); if (manifestStream == null) { return; } Manifest manifest = new Manifest(manifestStream); classpath = manifest.getMainAttributes().getValue("Class-Path"); } finally { if (manifestStream != null) { manifestStream.close(); } if (jarFile != null) { jarFile.close(); } } if (classpath == null) { classpath = ""; } pathMap.put(absPathPlusTimeAndLength, classpath); } if (!"".equals(classpath)) { URL baseURL = pathComponent.toURL(); StringTokenizer st = new StringTokenizer(classpath); while (st.hasMoreTokens()) { String classpathElement = st.nextToken(); URL libraryURL = new URL(baseURL, classpathElement); if (!libraryURL.getProtocol().equals("file")) { logger.fine("Skipping jar library " + classpathElement + " since only relative URLs are supported by this" + " loader"); continue; } File libraryFile = new File(libraryURL.getFile()); if (libraryFile.exists() && !isInPath(libraryFile)) { addPathFile(libraryFile); } } } }
From source file:org.smilec.smile.student.CourseList.java
@SuppressWarnings("deprecation") private void getStoredFileURL() { // save URL for stored file File data_dir = getBaseContext().getFilesDir(); try {//from w w w . j av a 2s . c o m URL url = data_dir.toURL(); stored_file_url = url.toString(); } catch (Exception e) { Log.d(APP_TAG, "URL ERROR"); } }
From source file:org.openspaces.pu.container.standalone.StandaloneProcessingUnitContainerProvider.java
/** * <p> Creates a new {@link StandaloneProcessingUnitContainer} based on the configured * parameters. A standalone processing unit container is a container that understands a * processing unit archive structure (both when working with an "exploded" directory and when * working with a zip/jar archive of it). It is provided with the location of the processing * unit using {@link org.openspaces.pu.container.standalone.StandaloneProcessingUnitContainerProvider#StandaloneProcessingUnitContainerProvider(String)}. * The location itself follows Spring resource loader syntax. * * <p> If {@link #addConfigLocation(String)} is used, the Spring xml context will be read based * on the provided locations. If no config location was provided the default config location * will be <code>classpath*:/META-INF/spring/pu.xml</code>. * * <p> If {@link #setBeanLevelProperties(org.openspaces.core.properties.BeanLevelProperties)} is * set will use the configured bean level properties in order to configure the application * context and specific beans within it based on properties. This is done by adding {@link * org.openspaces.core.properties.BeanLevelPropertyBeanPostProcessor} and {@link * org.openspaces.core.properties.BeanLevelPropertyPlaceholderConfigurer} to the application * context./* w ww . ja v a2 s.co m*/ * * <p> If {@link #setClusterInfo(org.openspaces.core.cluster.ClusterInfo)} is set will use it to * inject {@link org.openspaces.core.cluster.ClusterInfo} into beans that implement {@link * org.openspaces.core.cluster.ClusterInfoAware}. * * @return An {@link StandaloneProcessingUnitContainer} instance */ public ProcessingUnitContainer createContainer() throws CannotCreateContainerException { File fileLocation = new File(location); if (!fileLocation.exists()) { throw new CannotCreateContainerException("Failed to locate pu location [" + location + "]"); } // in case we don't have a cluster info specific members final ClusterInfo clusterInfo = getClusterInfo(); if (clusterInfo != null && clusterInfo.getInstanceId() == null) { ClusterInfo origClusterInfo = clusterInfo; List<ProcessingUnitContainer> containers = new ArrayList<ProcessingUnitContainer>(); for (int i = 0; i < clusterInfo.getNumberOfInstances(); i++) { ClusterInfo containerClusterInfo = clusterInfo.copy(); containerClusterInfo.setInstanceId(i + 1); containerClusterInfo.setBackupId(null); setClusterInfo(containerClusterInfo); containers.add(createContainer()); if (clusterInfo.getNumberOfBackups() != null) { for (int j = 0; j < clusterInfo.getNumberOfBackups(); j++) { containerClusterInfo = containerClusterInfo.copy(); containerClusterInfo.setBackupId(j + 1); setClusterInfo(containerClusterInfo); containers.add(createContainer()); } } } setClusterInfo(origClusterInfo); return new CompoundProcessingUnitContainer( containers.toArray(new ProcessingUnitContainer[containers.size()])); } if (clusterInfo != null) { ClusterInfoParser.guessSchema(clusterInfo); } if (logger.isInfoEnabled()) { logger.info("Starting a Standalone processing unit container " + (clusterInfo != null ? "with " + clusterInfo : "")); } List<URL> urls = new ArrayList<URL>(); List<URL> sharedUrls = new ArrayList<URL>(); if (fileLocation.isDirectory()) { if (fileLocation.exists()) { if (logger.isDebugEnabled()) { logger.debug("Adding pu directory location [" + location + "] to classpath"); } try { urls.add(fileLocation.toURL()); } catch (MalformedURLException e) { throw new CannotCreateContainerException( "Failed to add classes to class loader with location [" + location + "]", e); } } addJarsLocation(fileLocation, urls, "lib"); addJarsLocation(fileLocation, sharedUrls, "shared-lib"); } else { JarFile jarFile; try { jarFile = new JarFile(fileLocation); } catch (IOException e) { throw new CannotCreateContainerException("Failed to open pu file [" + location + "]", e); } // add the root to the classpath try { urls.add(new URL("jar:" + fileLocation.toURL() + "!/")); } catch (MalformedURLException e) { throw new CannotCreateContainerException( "Failed to add pu location [" + location + "] to classpath", e); } // add jars in lib and shared-lib to the classpath for (Enumeration<JarEntry> entries = jarFile.entries(); entries.hasMoreElements();) { JarEntry jarEntry = entries.nextElement(); if (isWithinDir(jarEntry, "lib") || isWithinDir(jarEntry, "shared-lib")) { // extract the jar into a temp location if (logger.isDebugEnabled()) { logger.debug("Adding jar [" + jarEntry.getName() + "] with pu location [" + location + "]"); } File tempLocation = new File(System.getProperty("java.io.tmpdir") + "/openspaces"); tempLocation.mkdirs(); File tempJar; String tempJarName = jarEntry.getName(); if (tempJarName.indexOf('/') != -1) { tempJarName = tempJarName.substring(tempJarName.lastIndexOf('/') + 1); } try { tempJar = File.createTempFile(tempJarName, ".jar", tempLocation); } catch (IOException e) { throw new CannotCreateContainerException("Failed to create temp jar at location [" + tempLocation + "] with name [" + tempJarName + "]", e); } tempJar.deleteOnExit(); if (logger.isTraceEnabled()) { logger.trace("Extracting jar [" + jarEntry.getName() + "] to temporary jar [" + tempJar.getAbsolutePath() + "]"); } FileOutputStream fos; try { fos = new FileOutputStream(tempJar); } catch (FileNotFoundException e) { throw new CannotCreateContainerException( "Failed to find temp jar [" + tempJar.getAbsolutePath() + "]", e); } InputStream is = null; try { is = jarFile.getInputStream(jarEntry); FileCopyUtils.copy(is, fos); } catch (IOException e) { throw new CannotCreateContainerException( "Failed to create temp jar [" + tempJar.getAbsolutePath() + "]"); } finally { if (is != null) { try { is.close(); } catch (IOException e1) { // do nothing } } try { fos.close(); } catch (IOException e1) { // do nothing } } try { if (isWithinDir(jarEntry, "lib")) { urls.add(tempJar.toURL()); } else if (isWithinDir(jarEntry, "shared-lib")) { sharedUrls.add(tempJar.toURL()); } } catch (MalformedURLException e) { throw new CannotCreateContainerException("Failed to add pu entry [" + jarEntry.getName() + "] with location [" + location + "]", e); } } } } List<URL> allUrls = new ArrayList<URL>(); allUrls.addAll(sharedUrls); allUrls.addAll(urls); addUrlsToContextClassLoader(allUrls.toArray(new URL[allUrls.size()])); StandaloneContainerRunnable containerRunnable = new StandaloneContainerRunnable(getBeanLevelProperties(), clusterInfo, configLocations); Thread standaloneContainerThread = new Thread(containerRunnable, "Standalone Container Thread"); standaloneContainerThread.setDaemon(false); standaloneContainerThread.start(); while (!containerRunnable.isInitialized()) { try { Thread.sleep(5000); } catch (InterruptedException e) { logger.warn("Interrupted while waiting for standalone container to initialize"); } } if (containerRunnable.hasException()) { throw new CannotCreateContainerException("Failed to start container", containerRunnable.getException()); } return new StandaloneProcessingUnitContainer(containerRunnable); }