Example usage for java.io File setExecutable

List of usage examples for java.io File setExecutable

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Introduction

In this page you can find the example usage for java.io File setExecutable.

Prototype

public boolean setExecutable(boolean executable)

Source Link

Document

A convenience method to set the owner's execute permission for this abstract pathname.

Usage

From source file:io.github.bonigarcia.wdm.Downloader.java

public static File unGzip(File archive) throws IOException {

    log.trace("UnGzip {}", archive);
    String fileName = archive.getName();
    int iDash = fileName.indexOf("-");
    if (iDash != -1) {
        fileName = fileName.substring(0, iDash);
    }/*from   w w w .j ava2 s. c o m*/
    int iDot = fileName.indexOf(".");
    if (iDot != -1) {
        fileName = fileName.substring(0, iDot);
    }
    File target = new File(archive.getParentFile() + File.separator + fileName);

    try (GZIPInputStream in = new GZIPInputStream(new FileInputStream(archive))) {
        try (FileOutputStream out = new FileOutputStream(target)) {
            for (int c = in.read(); c != -1; c = in.read()) {
                out.write(c);
            }
        }
    }

    if (!target.getName().toLowerCase().contains(".exe") && target.exists()) {
        target.setExecutable(true);
    }

    return target;
}

From source file:edu.isi.wings.portal.classes.domains.Domain.java

public static Domain importLegacyDomain(String domName, Config config, String legacyDomDir) {
    // Get Legacy apis
    PropertiesHelper.resetProperties();//  w ww.j  a v a2s  .  c  o  m
    PropertiesHelper.loadWingsProperties(legacyDomDir + fsep + "wings.properties");
    Properties legacyprops = TemplateFactory.createLegacyConfiguration();
    legacyprops.putAll(DataFactory.createLegacyConfiguration());
    legacyprops.putAll(ComponentFactory.createLegacyConfiguration());
    DataCreationAPI ldc = DataFactory.getCreationAPI(legacyprops);
    ComponentCreationAPI lacc = ComponentFactory.getCreationAPI(legacyprops, false);
    ComponentCreationAPI lccc = ComponentFactory.getCreationAPI(legacyprops, true);
    TemplateCreationAPI ltc = TemplateFactory.getCreationAPI(legacyprops);

    // Get new apis
    Domain domain = Domain.createDefaultDomain(domName, config.getUserDir(), config.getExportUserUrl());
    Properties props = config.getProperties(domain);
    DataCreationAPI dc = DataFactory.getCreationAPI(props);
    ComponentCreationAPI acc = ComponentFactory.getCreationAPI(props, false);
    ComponentCreationAPI ccc = ComponentFactory.getCreationAPI(props, true);
    TemplateCreationAPI tc = TemplateFactory.getCreationAPI(props);

    // Copy from legacy apis to new apis
    dc.copyFrom(ldc);
    acc.copyFrom(lacc);
    ccc.copyFrom(lccc);
    tc.copyFrom(ltc);

    // Copy legacy data/code directories to new data/code storage directory
    File srcDataDir = new File(PropertiesHelper.getDataDirectory());
    File destDataDir = new File(
            domain.getDomainDirectory() + fsep + domain.getDataLibrary().getStorageDirectory());
    File srcCodeDir = new File(PropertiesHelper.getCodeDirectory());
    File destCodeDir = new File(
            domain.getDomainDirectory() + fsep + domain.getConcreteComponentLibrary().getStorageDirectory());
    File srcBeamerDir = new File(PropertiesHelper.getOntologyDir() + fsep + "beamer");
    File destBeamerDir = new File(domain.getDomainDirectory() + fsep + "beamer");
    try {
        if (srcDataDir.isDirectory())
            FileUtils.copyDirectory(srcDataDir, destDataDir);
        if (srcCodeDir.isDirectory()) {
            FileUtils.copyDirectory(srcCodeDir, destCodeDir);
            // FIXME: Setting executable permissions on all files for now
            for (File f : FileUtils.listFiles(destCodeDir, null, true)) {
                f.setExecutable(true);
            }
        }
        if (srcBeamerDir.isDirectory())
            FileUtils.copyDirectory(srcBeamerDir, destBeamerDir);
    } catch (IOException e) {
        e.printStackTrace();
    }

    return domain;
}

From source file:edu.isi.wings.portal.classes.domains.Domain.java

public static Domain renameDomain(Domain domain, String newname, Config config) {
    Properties props = config.getProperties(domain);
    DataCreationAPI dc = DataFactory.getCreationAPI(props);
    ComponentCreationAPI acc = ComponentFactory.getCreationAPI(props, false);
    ComponentCreationAPI ccc = ComponentFactory.getCreationAPI(props, true);
    TemplateCreationAPI tc = TemplateFactory.getCreationAPI(props);

    File tempdir;//from  w w w.  ja v  a2s .  c  om
    try {
        tempdir = File.createTempFile("domain-", "-temp");
        if (!tempdir.delete() || !tempdir.mkdirs())
            return null;
    } catch (IOException e1) {
        return null;
    }

    Domain todom = Domain.createDefaultDomain(newname, config.getUserDir(), config.getExportUserUrl());
    todom.saveDomain();

    props = config.getProperties(todom);
    DataCreationAPI todc = DataFactory.getCreationAPI(props);
    ComponentCreationAPI toacc = ComponentFactory.getCreationAPI(props, false);
    ComponentCreationAPI toccc = ComponentFactory.getCreationAPI(props, true);
    TemplateCreationAPI totc = TemplateFactory.getCreationAPI(props);

    // Copy into non-triple-store apis
    todc.copyFrom(dc);
    toacc.copyFrom(acc);
    toccc.copyFrom(ccc);
    totc.copyFrom(tc);

    // Copy legacy data/code directories to new data/code storage directory
    File srcDataDir = new File(
            domain.getDomainDirectory() + fsep + domain.getDataLibrary().getStorageDirectory());
    File destDataDir = new File(
            todom.getDomainDirectory() + fsep + todom.getDataLibrary().getStorageDirectory());
    File srcCodeDir = new File(
            domain.getDomainDirectory() + fsep + domain.getConcreteComponentLibrary().getStorageDirectory());
    File destCodeDir = new File(
            todom.getDomainDirectory() + fsep + todom.getConcreteComponentLibrary().getStorageDirectory());
    try {
        if (srcDataDir.isDirectory())
            FileUtils.copyDirectory(srcDataDir, destDataDir);
        if (srcCodeDir.isDirectory()) {
            FileUtils.copyDirectory(srcCodeDir, destCodeDir);
            // FIXME: Setting executable permissions on all files for now
            for (File f : FileUtils.listFiles(destCodeDir, null, true)) {
                f.setExecutable(true);
            }
        }
    } catch (IOException e) {
        e.printStackTrace();
    }

    deleteDomain(domain, config, true);

    return todom;
}

From source file:edu.isi.wings.portal.classes.domains.Domain.java

public static Domain importDomain(String domName, Config config, String importDomDir) {
    String domurl;/*from w  w  w.j a v  a  2  s  .  c o m*/
    try {
        domurl = FileUtils.readFileToString(new File(importDomDir + File.separator + "domain.url"));
        domurl = domurl.trim();
    } catch (IOException e1) {
        e1.printStackTrace();
        return null;
    }
    Domain fromdom = new Domain(domName, importDomDir, domurl, false);
    Properties props = config.getProperties(fromdom);
    DataCreationAPI dc = DataFactory.getCreationAPI(props);
    ComponentCreationAPI acc = ComponentFactory.getCreationAPI(props, false);
    ComponentCreationAPI ccc = ComponentFactory.getCreationAPI(props, true);
    TemplateCreationAPI tc = TemplateFactory.getCreationAPI(props);
    ResourceAPI rc = ResourceFactory.getAPI(props);

    Domain todom = Domain.createDefaultDomain(domName, config.getUserDir(), config.getExportUserUrl());
    props = config.getProperties(todom);
    DataCreationAPI todc = DataFactory.getCreationAPI(props);
    ComponentCreationAPI toacc = ComponentFactory.getCreationAPI(props, false);
    ComponentCreationAPI toccc = ComponentFactory.getCreationAPI(props, true);
    TemplateCreationAPI totc = TemplateFactory.getCreationAPI(props);
    ResourceAPI torc = ResourceFactory.getAPI(props);

    // Copy from file-based apis to triple-store apis
    todc.copyFrom(dc);
    toacc.copyFrom(acc);
    toccc.copyFrom(ccc);
    totc.copyFrom(tc);
    if (rc != null && torc != null)
        torc.copyFrom(rc, ccc);

    // Copy legacy data/code directories to new data/code storage directory
    File srcDataDir = new File(
            fromdom.getDomainDirectory() + fsep + fromdom.getDataLibrary().getStorageDirectory());
    File destDataDir = new File(
            todom.getDomainDirectory() + fsep + todom.getDataLibrary().getStorageDirectory());
    File srcCodeDir = new File(
            fromdom.getDomainDirectory() + fsep + fromdom.getConcreteComponentLibrary().getStorageDirectory());
    File destCodeDir = new File(
            todom.getDomainDirectory() + fsep + todom.getConcreteComponentLibrary().getStorageDirectory());
    File srcBeamerDir = new File(fromdom.getDomainDirectory() + fsep + "beamer");
    File destBeamerDir = new File(todom.getDomainDirectory() + fsep + "beamer");
    try {
        if (srcDataDir.isDirectory())
            FileUtils.copyDirectory(srcDataDir, destDataDir);
        if (srcCodeDir.isDirectory()) {
            FileUtils.copyDirectory(srcCodeDir, destCodeDir);
            // FIXME: Setting executable permissions on all files for now
            for (File f : FileUtils.listFiles(destCodeDir, null, true)) {
                f.setExecutable(true);
            }
        }
        if (srcBeamerDir.isDirectory())
            FileUtils.copyDirectory(srcBeamerDir, destBeamerDir);
    } catch (IOException e) {
        e.printStackTrace();
    }
    return todom;
}

From source file:edu.isi.wings.portal.classes.domains.Domain.java

public static File exportDomain(Domain fromdom, Config config) {
    Properties props = config.getProperties(fromdom);
    DataCreationAPI dc = DataFactory.getCreationAPI(props);
    ComponentCreationAPI acc = ComponentFactory.getCreationAPI(props, false);
    ComponentCreationAPI ccc = ComponentFactory.getCreationAPI(props, true);
    TemplateCreationAPI tc = TemplateFactory.getCreationAPI(props);
    ResourceAPI rc = ResourceFactory.getAPI(props);

    File tempdir;/*from  ww  w.j  a  v a2s .  co  m*/
    try {
        tempdir = File.createTempFile("domain-", "-temp");
        if (!tempdir.delete() || !tempdir.mkdirs())
            return null;
    } catch (IOException e1) {
        return null;
    }

    Domain todom = Domain.createDefaultDomain(fromdom.getDomainName(), tempdir.getAbsolutePath(),
            config.getExportUserUrl());
    todom.setUseSharedTripleStore(false);
    todom.saveDomain();
    props = config.getProperties(todom);
    DataCreationAPI todc = DataFactory.getCreationAPI(props);
    ComponentCreationAPI toacc = ComponentFactory.getCreationAPI(props, false);
    ComponentCreationAPI toccc = ComponentFactory.getCreationAPI(props, true);
    TemplateCreationAPI totc = TemplateFactory.getCreationAPI(props);
    ResourceAPI torc = ResourceFactory.getAPI(props);

    // Copy into non-triple-store apis
    todc.copyFrom(dc);
    toacc.copyFrom(acc);
    toccc.copyFrom(ccc);
    totc.copyFrom(tc);
    if (rc != null && torc != null)
        torc.copyFrom(rc, ccc);

    // Copy legacy data/code directories to new data/code storage directory
    File srcDataDir = new File(
            fromdom.getDomainDirectory() + fsep + fromdom.getDataLibrary().getStorageDirectory());
    File destDataDir = new File(
            todom.getDomainDirectory() + fsep + todom.getDataLibrary().getStorageDirectory());
    File srcCodeDir = new File(
            fromdom.getDomainDirectory() + fsep + fromdom.getConcreteComponentLibrary().getStorageDirectory());
    File destCodeDir = new File(
            todom.getDomainDirectory() + fsep + todom.getConcreteComponentLibrary().getStorageDirectory());
    File srcBeamerDir = new File(fromdom.getDomainDirectory() + fsep + "beamer");
    File destBeamerDir = new File(todom.getDomainDirectory() + fsep + "beamer");
    try {
        if (srcDataDir.isDirectory())
            FileUtils.copyDirectory(srcDataDir, destDataDir);
        if (srcCodeDir.isDirectory()) {
            FileUtils.copyDirectory(srcCodeDir, destCodeDir);
            // FIXME: Setting executable permissions on all files for now
            for (File f : FileUtils.listFiles(destCodeDir, null, true)) {
                f.setExecutable(true);
            }
        }
        if (srcBeamerDir.isDirectory())
            FileUtils.copyDirectory(srcBeamerDir, destBeamerDir);
    } catch (IOException e) {
        e.printStackTrace();
    }

    // Copy domain url
    File domUriFile = new File(todom.getDomainDirectory() + fsep + "domain.url");
    try {
        FileUtils.write(domUriFile, todom.getDomainUrl());
    } catch (IOException e) {
        e.printStackTrace();
    }

    return tempdir;
}

From source file:de.tudarmstadt.ukp.dkpro.core.api.resources.ResourceUtils.java

/**
 * Make the given URL available as an executable file. A temporary file is created and deleted
 * upon a regular shutdown of the JVM. If the parameter {@code aCache} is {@code true}, the
 * temporary file is remembered in a cache and if a file is requested for the same URL at a
 * later time, the same file is returned again. If the previously created file has been deleted
 * meanwhile, it is recreated from the URL.
 *
 * @param aUrl/*from   w  w w.  j av  a  2  s .c  o  m*/
 *            the URL.
 * @param aCache
 *            use the cache or not.
 * @return an executable file created from the given URL.
 * @throws IOException
 *             if the file has permissions issues.
 */

public static synchronized File getUrlAsExecutable(URL aUrl, boolean aCache) throws IOException {

    File file;
    synchronized (urlFileCache) {

        file = urlFileCache.get(aUrl.toString());
        if (!aCache || (file == null) || !file.exists()) {

            String name = FilenameUtils.getBaseName(aUrl.getPath());
            file = File.createTempFile(name, ".temp");
            file.setExecutable(true);
            if (!file.canExecute()) {
                StringBuilder errorMessage = new StringBuilder(128);
                errorMessage.append("Tried to use temporary folder, but seems it is not "
                        + "executable. Please check the permissions rights from your " + "temporary folder.\n");

                if (isEnvironmentVariableDefined(XDG_RUNTIME_DIR_ENV_VAR, errorMessage)
                        && checkFolderPermissions(errorMessage, System.getenv(XDG_RUNTIME_DIR_ENV_VAR))) {
                    file = getFileAsExecutable(aUrl, System.getenv(XDG_RUNTIME_DIR_ENV_VAR));
                } else if (isEnvironmentVariableDefined(DKPRO_HOME_ENV_VAR, errorMessage)
                        && checkFolderPermissions(errorMessage,
                                System.getenv(DKPRO_HOME_ENV_VAR) + File.separator + "temp")) {
                    file = getFileAsExecutable(aUrl,
                            System.getenv(DKPRO_HOME_ENV_VAR) + File.separator + "temp");
                } else {
                    if (!isUserHomeDefined(errorMessage)
                            || !checkFolderPermissions(errorMessage, System.getProperty("user.home")
                                    + File.separator + ".dkpro" + File.separator + "temp")) {
                        throw new IOException(errorMessage.toString());
                    }
                    file = getFileAsExecutable(aUrl, System.getProperty("user.home") + File.separator + ".dkpro"
                            + File.separator + "temp");
                }

            }
            file.deleteOnExit();
            InputStream inputStream = null;
            OutputStream outputStream = null;
            try {
                inputStream = aUrl.openStream();
                outputStream = new FileOutputStream(file);
                copy(inputStream, outputStream);
            } finally {
                closeQuietly(inputStream);
                closeQuietly(outputStream);
            }
            if (aCache) {
                urlFileCache.put(aUrl.toString(), file);
            }
        }
    }
    return file;
}

From source file:io.vertx.config.vault.utils.VaultDownloader.java

public static File download() {
    File out = new File("target/vault/vault");

    if (SystemUtils.IS_OS_WINDOWS) {
        out = new File("target/vault/vault.exe");
    }//from   w w  w. j a va2s .  co m

    if (out.isFile()) {
        return out;
    }

    File zip = new File("target/vault.zip");

    try {
        FileUtils.copyURLToFile(getURL(VaultProcess.VAULT_VERSION), zip);
    } catch (Exception e) {
        throw new RuntimeException(e);
    }
    assert zip.isFile();

    System.out.println(zip.getAbsolutePath() + " has been downloaded, unzipping");
    try {
        unzip(zip, out.getParentFile());
    } catch (IOException e) {
        throw new RuntimeException(e);
    }
    System.out.println("Vault: " + out.getAbsolutePath());
    assert out.isFile();
    out.setExecutable(true);
    assert out.canExecute();
    return out;
}

From source file:edu.stanford.epad.epadws.dcm4chee.Dcm4CheeOperations.java

public static boolean dcmsnd(File inputDirFile, boolean throwException) throws Exception {
    InputStream is = null;/*from  ww w  . j a v  a  2s  .co m*/
    InputStreamReader isr = null;
    BufferedReader br = null;
    FileWriter tagFileWriter = null;
    boolean success = false;
    try {
        String aeTitle = EPADConfig.aeTitle;
        String dicomServerIP = EPADConfig.dicomServerIP;
        String dicomServerPort = EPADConfig.dicomServerPort;
        String dicomServerTitleAndPort = aeTitle + "@" + dicomServerIP + ":" + dicomServerPort;

        dicomServerTitleAndPort = dicomServerTitleAndPort.trim();

        String dirPath = inputDirFile.getAbsolutePath();
        if (pathContainsSpaces(dirPath))
            dirPath = escapeSpacesInDirPath(dirPath);

        File dir = new File(dirPath);
        int nbFiles = -1;
        if (dir != null) {
            String[] filePaths = dir.list();
            if (filePaths != null)
                nbFiles = filePaths.length;
        }
        log.info("./dcmsnd: sending " + nbFiles + " file(s) - command: ./dcmsnd " + dicomServerTitleAndPort
                + " " + dirPath);

        String[] command = { "./dcmsnd", dicomServerTitleAndPort, dirPath };
        ProcessBuilder processBuilder = new ProcessBuilder(command);
        String dicomScriptsDir = EPADConfig.getEPADWebServerDICOMScriptsDir() + "bin/";
        File script = new File(dicomScriptsDir, "dcmsnd");
        if (!script.exists())
            dicomScriptsDir = EPADConfig.getEPADWebServerDICOMBinDir();
        script = new File(dicomScriptsDir, "dcmsnd");
        if (!script.exists())
            throw new Exception("No script found:" + script.getAbsolutePath());
        // Java 6 - Runtime.getRuntime().exec("chmod u+x "+script.getAbsolutePath());
        script.setExecutable(true);
        processBuilder.directory(new File(dicomScriptsDir));
        processBuilder.redirectErrorStream(true);
        Process process = processBuilder.start();
        is = process.getInputStream();
        isr = new InputStreamReader(is);
        br = new BufferedReader(isr);

        String line;
        StringBuilder sb = new StringBuilder();
        while ((line = br.readLine()) != null) {
            sb.append(line).append("\n");
            log.info("./dcmsend output: " + line);
        }

        try {
            int exitValue = process.waitFor();
            log.info("DICOM send exit value is: " + exitValue);
            if (exitValue == 0)
                success = true;
        } catch (InterruptedException e) {
            log.warning("Didn't send DICOM files in: " + inputDirFile.getAbsolutePath(), e);
        }
        String cmdLineOutput = sb.toString();

        if (cmdLineOutput.toLowerCase().contains("error"))
            throw new IllegalStateException("Failed for: " + parseError(cmdLineOutput));
        return success;
    } catch (Exception e) {
        log.warning("DicomSendTask failed to send DICOM files", e);
        if (e instanceof IllegalStateException && throwException) {
            throw e;
        }
        if (throwException) {
            throw new IllegalStateException("DicomSendTask failed to send DICOM files", e);
        }
        return success;
    } catch (OutOfMemoryError oome) {
        log.warning("DicomSendTask out of memory: ", oome);
        if (throwException) {
            throw new IllegalStateException("DicomSendTask out of memory: ", oome);
        }
        return success;
    } finally {
        IOUtils.closeQuietly(tagFileWriter);
        IOUtils.closeQuietly(br);
        IOUtils.closeQuietly(isr);
        IOUtils.closeQuietly(is);
    }
}

From source file:com.magnet.tools.tests.ScenarioUtils.java

private static void extractScripts() {
    String[] ALL_SCRIPTS = new String[] { INVOKE_MAVEN_SCRIPT, GENERATE_ARCHETYPE_SCRIPT,
            GENERATE_PROJECT_SCRIPT, GENERATE_PROJECT_DEBUG_SCRIPT, KILL_MAGNET_SCRIPT, KILL_WLS_SCRIPT,
            START_WLS_SERVER_SCRIPT, STOP_WLS_SERVER_SCRIPT, REDEPLOY_WLS_APP_SCRIPT, WLS_POM_XML_SCRIPT };

    File scriptsDir = new File(SCRIPTS_DIR);
    if (!scriptsDir.mkdir()) {
        ScenarioUtils.log("Directory already created: " + scriptsDir);
    }/* w  ww. ja  va 2 s . c  o m*/
    for (String script : ALL_SCRIPTS) {
        String from = SCRIPTS_CLASSPATH + script;
        String to = SCRIPTS_DIR + File.separator + script;
        InputStream is = ScenarioUtils.class.getResourceAsStream(from);
        OutputStream os = null;
        File file = new File(to);
        try {

            if (!file.createNewFile()) {
                ScenarioUtils.log("File already created " + file);
            }

            if (!file.setExecutable(true)) {
                ScenarioUtils.log("File already executable: " + file);
            }
            os = new FileOutputStream(to);
            IOUtils.copy(is, os);
        } catch (Exception e) {
            throw new IllegalStateException("Couldn't copy classpath resource " + from + " to file " + to, e);
        } finally {
            try {
                if (null != is) {
                    is.close();
                }
                if (null != os) {
                    os.close();
                }
            } catch (IOException e) {
                // eat it
            }

        }

    }
}

From source file:org.jboss.tools.openshift.reddeer.utils.FileHelper.java

private static void unzipEntry(ZipFile zipfile, ZipEntry entry, File outputDirectory) {

    if (entry.isDirectory()) {
        createDirectory(new File(outputDirectory, entry.getName()));
        return;//www .j  a v  a2 s .c  o  m
    }

    File outputFile = new File(outputDirectory, entry.getName());
    if (!outputFile.getParentFile().exists()) {
        createDirectory(outputFile.getParentFile());
    }

    BufferedInputStream inputStream = null;
    BufferedOutputStream outputStream = null;
    try {
        inputStream = new BufferedInputStream(zipfile.getInputStream(entry));
        outputStream = new BufferedOutputStream(new FileOutputStream(outputFile));
        copy(inputStream, outputStream, 1024);
    } catch (IOException ex) {
    } finally {
        try {
            outputStream.close();
        } catch (Exception ex) {
        }
        try {
            inputStream.close();
        } catch (Exception ex) {
        }
    }
    outputFile.setExecutable(true);
    outputFile.setReadable(true);
    outputFile.setWritable(true);
}