Example usage for java.awt.event MouseEvent getX

List of usage examples for java.awt.event MouseEvent getX

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Introduction

In this page you can find the example usage for java.awt.event MouseEvent getX.

Prototype

public int getX()

Source Link

Document

Returns the horizontal x position of the event relative to the source component.

Usage

From source file:com.monead.semantic.workbench.SemanticWorkbench.java

/**
 * Handle right-mouse click on ontology model tree.
 * /*from ww  w.j a  v a2 s .  com*/
 * If the selected node is a class or property it will be added to the list of
 * suppressed classes and properties so that it won't show up in the tree.
 * 
 * If the selected node is an individual, the tree will be searched backward
 * (up) to jump to the previous matching individual in the tree
 * 
 * Otherwise, no action will be taken in response to the right mouse click in
 * the tree.
 * 
 * @param event
 *          The mouse click event
 */
private void processOntologyModelTreeRightClick(MouseEvent event) {
    final Wrapper wrapper = getSelectedWrapperInTree(event);
    if (wrapper != null) {
        if (wrapper instanceof WrapperClass || wrapper instanceof WrapperDataProperty
                || wrapper instanceof WrapperObjectProperty) {
            final FilterValuePopup popup = new FilterValuePopup(wrapper);
            popup.show(event.getComponent(), event.getX(), event.getY());
        } else if (wrapper instanceof WrapperInstance) {
            findMatchingIndividual(wrapper, false);
        }
    }
}

From source file:com.net2plan.gui.utils.viewEditTopolTables.specificTables.AdvancedJTable_multicastDemand.java

@Override
public void doPopup(final MouseEvent e, final int row, final Object itemId) {
    JPopupMenu popup = new JPopupMenu();
    final ITableRowFilter rf = callback.getVisualizationState().getTableRowFilter();
    final List<MulticastDemand> demandRowsInTheTable = getVisibleElementsInTable();

    /* Add the popup menu option of the filters */
    final List<MulticastDemand> selectedDemands = (List<MulticastDemand>) (List<?>) getSelectedElements()
            .getFirst();//  w  w  w.  j a  v  a 2 s .com
    if (!selectedDemands.isEmpty()) {
        final JMenu submenuFilters = new JMenu("Filters");
        final JMenuItem filterKeepElementsAffectedThisLayer = new JMenuItem(
                "This layer: Keep elements associated to this demand traffic");
        final JMenuItem filterKeepElementsAffectedAllLayers = new JMenuItem(
                "All layers: Keep elements associated to this demand traffic");
        submenuFilters.add(filterKeepElementsAffectedThisLayer);
        if (callback.getDesign().getNumberOfLayers() > 1)
            submenuFilters.add(filterKeepElementsAffectedAllLayers);
        filterKeepElementsAffectedThisLayer.addActionListener(new ActionListener() {
            @Override
            public void actionPerformed(ActionEvent e) {
                if (selectedDemands.size() > 1)
                    throw new RuntimeException();
                TBFToFromCarriedTraffic filter = new TBFToFromCarriedTraffic(selectedDemands.get(0), true);
                callback.getVisualizationState().updateTableRowFilter(filter);
                callback.updateVisualizationJustTables();
            }
        });
        filterKeepElementsAffectedAllLayers.addActionListener(new ActionListener() {
            @Override
            public void actionPerformed(ActionEvent e) {
                if (selectedDemands.size() > 1)
                    throw new RuntimeException();
                TBFToFromCarriedTraffic filter = new TBFToFromCarriedTraffic(selectedDemands.get(0), false);
                callback.getVisualizationState().updateTableRowFilter(filter);
                callback.updateVisualizationJustTables();
            }
        });
        popup.add(submenuFilters);
        popup.addSeparator();
    }

    if (callback.getVisualizationState().isNetPlanEditable()) {
        popup.add(getAddOption());
        for (JComponent item : getExtraAddOptions())
            popup.add(item);
    }

    if (!demandRowsInTheTable.isEmpty()) {
        if (callback.getVisualizationState().isNetPlanEditable()) {
            if (row != -1) {
                if (popup.getSubElements().length > 0)
                    popup.addSeparator();

                if (networkElementType == NetworkElementType.LAYER
                        && callback.getDesign().getNumberOfLayers() == 1) {

                } else {
                    JMenuItem removeItem = new JMenuItem("Remove " + networkElementType);

                    removeItem.addActionListener(new ActionListener() {
                        @Override
                        public void actionPerformed(ActionEvent e) {
                            NetPlan netPlan = callback.getDesign();

                            try {
                                netPlan.getMulticastDemandFromId((long) itemId).remove();
                                callback.getVisualizationState()
                                        .recomputeCanvasTopologyBecauseOfLinkOrNodeAdditionsOrRemovals();
                                callback.updateVisualizationAfterChanges(
                                        Collections.singleton(NetworkElementType.MULTICAST_DEMAND));
                                callback.getUndoRedoNavigationManager().addNetPlanChange();
                            } catch (Throwable ex) {
                                ErrorHandling.addErrorOrException(ex, getClass());
                                ErrorHandling.showErrorDialog("Unable to remove " + networkElementType);
                            }
                        }
                    });

                    popup.add(removeItem);
                }

                addPopupMenuAttributeOptions(e, row, itemId, popup);
            }
            if (networkElementType != NetworkElementType.LAYER) {
                JMenuItem removeItems = new JMenuItem("Remove all " + networkElementType + "s in table");

                removeItems.addActionListener(new ActionListener() {
                    @Override
                    public void actionPerformed(ActionEvent e) {
                        NetPlan netPlan = callback.getDesign();
                        try {
                            if (rf == null)
                                netPlan.removeAllMulticastDemands();
                            else
                                for (MulticastDemand d : demandRowsInTheTable)
                                    d.remove();
                            callback.getVisualizationState()
                                    .recomputeCanvasTopologyBecauseOfLinkOrNodeAdditionsOrRemovals();
                            callback.updateVisualizationAfterChanges(
                                    Collections.singleton(NetworkElementType.MULTICAST_DEMAND));
                            callback.getUndoRedoNavigationManager().addNetPlanChange();
                        } catch (Throwable ex) {
                            ex.printStackTrace();
                            ErrorHandling.showErrorDialog(ex.getMessage(),
                                    "Unable to remove all " + networkElementType + "s");
                        }
                    }
                });
                popup.add(removeItems);
            }

            List<JComponent> extraOptions = getExtraOptions(row, itemId);
            if (!extraOptions.isEmpty()) {
                if (popup.getSubElements().length > 0)
                    popup.addSeparator();
                for (JComponent item : extraOptions)
                    popup.add(item);
            }
        }

        List<JComponent> forcedOptions = getForcedOptions();
        if (!forcedOptions.isEmpty()) {
            if (popup.getSubElements().length > 0)
                popup.addSeparator();
            for (JComponent item : forcedOptions)
                popup.add(item);
        }
    }

    popup.show(e.getComponent(), e.getX(), e.getY());
}

From source file:base.BasePlayer.Main.java

public Main() {

    super(new GridBagLayout());
    try {//from   ww w .  ja v a 2  s.c o m

        //UIManager.put("PopupMenu.border", BorderFactory.createMatteBorder(0, 20, 0, 0, new Color(230,230,230)));
        //URL fontUrl = new URL("http://www.webpagepublicity.com/" +
        //       "free-fonts/a/Airacobra%20Condensed.ttf");
        //      URL fontUrl = new URL("C:/HY-Data/RKATAINE/WinPython-64bit-3.5.3.1Qt5/python-3.5.3.amd64/share/numdifftools/docs/_build/html/_static/fonts/Inconsolata-Regular.ttf");
        //   URL fonturl = this.getClass().getResource("OpenSans-Regular.ttf");
        //   menuFont = Font.createFont(Font.TRUETYPE_FONT, new File(fonturl.getFile()));
        //   C:\HY-Data\RKATAINE\WinPython-64bit-3.5.3.1Qt5\python-3.5.3.amd64\Lib\site-packages\reportlab\fonts
        Launcher.fromMain = true;
        Launcher.main(args);
        VariantHandler.main(argsit);
        glass = Toolkit.getDefaultToolkit().getImage(getClass().getResource("icons/glass.jpg"));
        ToolTipManager.sharedInstance().setInitialDelay(100);
        // ToolTipManager.sharedInstance().setDismissDelay(2000);
        UIManager.put("ToolTip.background", new Color(255, 255, 214));
        UIManager.put("ToolTip.border", BorderFactory.createCompoundBorder(
                UIManager.getBorder("ToolTip.border"), BorderFactory.createEmptyBorder(4, 4, 4, 4)));
        lineseparator = System.getProperty("line.separator");

        proxysettings = new ProxySettings();
        panel = new JPanel(new GridBagLayout());
        //menuFont = menuFont.deriveFont(Font.PLAIN,12);
        Draw.defaultFont = menuFont;

        gd = GraphicsEnvironment.getLocalGraphicsEnvironment().getDefaultScreenDevice();
        width = gd.getDisplayMode().getWidth();
        height = gd.getDisplayMode().getHeight();
        if (Launcher.fontSize.equals("")) {
            if (width < 1500) {
                defaultFontSize = 11;

                buttonHeight = Main.defaultFontSize * 2;
                buttonWidth = Main.defaultFontSize * 6;

            } else if (width < 2000) {
                defaultFontSize = 12;

                buttonHeight = Main.defaultFontSize * 2 + 4;
                buttonWidth = Main.defaultFontSize * 6 + 4;

            } else if (width < 3000) {
                defaultFontSize = 15;
                buttonHeight = Main.defaultFontSize * 2 + 4;
                buttonWidth = Main.defaultFontSize * 6 + 4;
            } else {
                defaultFontSize = 19;
                buttonHeight = Main.defaultFontSize * 2 + 4;
                buttonWidth = Main.defaultFontSize * 6 + 4;
            }
        } else {
            try {
                defaultFontSize = Integer.parseInt(Launcher.fontSize);
            } catch (Exception e) {
                defaultFontSize = 12;
            }
        }

        menuFont = new Font("SansSerif", Font.PLAIN, Main.defaultFontSize);
        menuFontBold = new Font("SansSerif", Font.BOLD, Main.defaultFontSize);
        //   menuFont = new Font("SansSerif", Font.BOLD, Main.defaultFontSize);
    } catch (Exception e) {
        e.printStackTrace();
    }
    FileSystemView fsv = FileSystemView.getFileSystemView();
    File[] paths = File.listRoots();

    for (File path : paths) {
        if (fsv.getSystemDisplayName(path).contains("merit")) {
            pleiades = true;
        }
    }

    screenSize = new Dimension(width, height);

    drawHeight = (int) (screenSize.getHeight() * 0.6);
    sidebarWidth = (int) (screenSize.getWidth() * 0.1);
    drawWidth = (int) (screenSize.getWidth() - sidebarWidth);
    thisMainListener = this;
    try {
        htsjdk.samtools.util.Log.setGlobalLogLevel(htsjdk.samtools.util.Log.LogLevel.ERROR);
        /*   for(int i=0;i<snow.length; i++) {
              snow[i][0] = (height*Math.random());
              snow[i][1] = (4*Math.random() +1);
              snow[i][2] = (12*Math.random() -6);
              snow[i][3] = (2*Math.random() +1);
           }*/
        frame.addWindowListener(new java.awt.event.WindowAdapter() {
            @Override
            public void windowClosing(java.awt.event.WindowEvent windowEvent) {
                /*if (JOptionPane.showConfirmDialog(frame, "Are you sure to close this window?", "Really Closing?", JOptionPane.YES_NO_OPTION, JOptionPane.QUESTION_MESSAGE) == JOptionPane.YES_OPTION){
                    System.exit(0);
                }*/
                if (configChanged) {

                    try {
                        BufferedWriter fileWriter = new BufferedWriter(new FileWriter(Launcher.configfile));
                        for (int i = 0; i < Launcher.config.size(); i++) {
                            fileWriter.write(Launcher.config.get(i) + lineseparator);
                        }
                        fileWriter.close();

                    } catch (Exception e) {
                        e.printStackTrace();
                    }
                }

            }
        });
        baseMap.put((byte) 'A', 1);
        baseMap.put((byte) 'C', 2);
        baseMap.put((byte) 'G', 3);
        baseMap.put((byte) 'T', 4);
        baseMap.put((byte) 'N', 5);
        baseMap.put((byte) 'I', 6);
        baseMap.put((byte) 'D', 7);
        mutTypes.put("TA", 0);
        mutTypes.put("AT", 0);
        mutTypes.put("TC", 1);
        mutTypes.put("AG", 1);
        mutTypes.put("TG", 2);
        mutTypes.put("AC", 2);
        mutTypes.put("CA", 3);
        mutTypes.put("GT", 3);
        mutTypes.put("CG", 4);
        mutTypes.put("GC", 4);
        mutTypes.put("CT", 5);
        mutTypes.put("GA", 5);

        getBase.put((byte) 'A', "A");
        getBase.put((byte) 'C', "C");
        getBase.put((byte) 'G', "G");
        getBase.put((byte) 'T', "T");
        getBase.put((byte) 'N', "N");
        getBase.put((byte) 'a', "A");
        getBase.put((byte) 'c', "C");
        getBase.put((byte) 'g', "G");
        getBase.put((byte) 't', "T");
        getBase.put((byte) 'n', "N");
        java.net.URL imgUrl = getClass().getResource("icons/save.gif");
        save = new ImageIcon(imgUrl);
        imgUrl = getClass().getResource("icons/open.gif");
        open = new ImageIcon(imgUrl);
        imgUrl = getClass().getResource("icons/settings.png");
        settingsIcon = new ImageIcon(imgUrl);
        userDir = new File(Main.class.getProtectionDomain().getCodeSource().getLocation().getPath()).getParent()
                .replace("%20", " ");
        settings = new JMenuItem("Settings", settingsIcon);

        //   Average.frame.setVisible(false);

        try {

            savedir = Launcher.defaultSaveDir;
            path = Launcher.defaultDir;
            gerp = Launcher.gerpfile;
            defaultGenome = Launcher.defaultGenome;
            defaultAnnotation = Launcher.defaultAnnotation;
            isProxy = Launcher.isProxy;
            proxyHost = Launcher.proxyHost;
            proxyPort = Launcher.proxyPort;
            proxyType = Launcher.proxyType;
            if (isProxy) {
                ProxySettings.useProxy.setSelected(true);
            }
            if (!proxyHost.equals("")) {
                ProxySettings.hostField.setText(proxyHost);
            }
            if (!proxyPort.equals("")) {
                ProxySettings.portField.setText(proxyPort);
            }
            if (!Launcher.proxyType.equals("")) {
                ProxySettings.proxytypes.setSelectedItem(proxyType);
            }
            if (Launcher.backColor.equals("")) {
                Draw.backColor = new Color(90, 90, 90);
            }

            else {

                Draw.backColor = new Color(Integer.parseInt(Launcher.backColor),
                        Integer.parseInt(Launcher.backColor), Integer.parseInt(Launcher.backColor));
                Settings.graySlider.setValue(Integer.parseInt(Launcher.backColor));
            }

            if (Launcher.genomeDir.equals("")) {

                genomeDir = new File(userDir + "/genomes/");
            } else {
                if (new File(Launcher.genomeDir).exists()) {

                    genomeDir = new File(Launcher.genomeDir);
                } else {
                    genomeDir = new File(userDir + "/genomes/");
                }
            }

            annotationfile = defaultAnnotation;
            controlDir = Launcher.ctrldir;
            trackDir = Launcher.trackDir;
            projectDir = Launcher.projectDir;
            downloadDir = Launcher.downloadDir;
        } catch (Exception e) {
            e.printStackTrace();
        }
        File[] genomes = genomeDir.listFiles(new FilenameFilter() {
            public boolean accept(File dir, String name) {
                return !name.contains(".txt") && !name.startsWith(".");
            }
        });
        chromHeight = (int) (drawHeight * 0.1);
        drawDimensions = new Dimension(drawWidth, drawHeight - chromHeight);
        bedDimensions = new Dimension(drawWidth, bedHeight);
        chromDimensions = new Dimension(drawWidth - Main.sidebarWidth - 1, drawHeight);
        drawCanvas = new Draw((int) drawDimensions.getWidth(), (int) drawDimensions.getHeight());
        controlDraw = new ControlCanvas((int) bedDimensions.getWidth(), (int) bedDimensions.getHeight());
        iconImage = Toolkit.getDefaultToolkit().getImage(getClass().getResource("icons/icon.png"));
        frame.setIconImage(iconImage);
        /*   if(args.length > 0) {
               for(int i = 0; i<args.length; i++) {
                  if(args[i].startsWith("-opendir")) {
                     path = args[i].substring(9).replace(" ", "");
                  }
                  else if(args[i].startsWith("-ctrldir")) {
                     Control.path = args[i].substring(9).replace(" ", "");
                  }             
               }       
            }*/

        //   BGZIPInputStream in = this.getClass().getResourceAsStream("SELEX_1505_representative_matrices.bedhead.gz");
        searchField.getDocument().addDocumentListener(new DocumentListener() {
            private String searchstring;

            public void changedUpdate(DocumentEvent e) {
                if (searchField.getText().contains(";")) {
                    searchList = searchField.getText().split(";");
                    for (int i = 0; i < searchList.length; i++) {
                        warn(searchList[i].replace(" ", ""));
                    }
                } else {
                    warn(searchField.getText().replace(" ", ""));
                }

            }

            public void removeUpdate(DocumentEvent e) {
                if (searchField.getText().contains(";")) {
                    searchList = searchField.getText().split(";");
                    for (int i = 0; i < searchList.length; i++) {
                        warn(searchList[i].replace(" ", ""));
                    }
                } else {
                    warn(searchField.getText().replace(" ", ""));
                }
            }

            public void insertUpdate(DocumentEvent e) {
                if (searchField.getText().contains(";")) {
                    searchList = searchField.getText().split(";");
                    for (int i = 0; i < searchList.length; i++) {
                        warn(searchList[i].replace(" ", ""));
                    }
                } else {
                    warn(searchField.getText().replace(" ", ""));
                }
            }

            public void warn(String searchtext) {

                if (searchTable.containsKey(searchtext.toUpperCase())) {
                    if (searchTable.get(searchtext.toUpperCase())[0]
                            .equals(Main.chromosomeDropdown.getSelectedItem())) {
                        searchChrom = searchTable.get(searchtext.toUpperCase())[0];
                        searchStart = Integer.parseInt(searchTable.get(searchtext.toUpperCase())[1]);
                        searchEnd = Integer.parseInt(searchTable.get(searchtext.toUpperCase())[2]);
                    } else {
                        chromDraw.repaint();
                        searchStart = -1;
                        searchEnd = -1;
                    }
                    chromDraw.repaint();
                    searchField.setForeground(Color.black);
                } else if (searchField.getText().toUpperCase().matches("CHR.{1,2}(?!:)")) {

                    if (Main.chromnamevector.contains(searchtext.toUpperCase().substring(3))) {
                        searchField.setForeground(Color.black);

                    } else {
                        chromDraw.repaint();
                        searchField.setForeground(Color.red);
                    }
                } else if (searchtext.toUpperCase().replace(",", "").matches("(CHR)?(.+:)?\\d+(-\\d+)?")) {

                    searchField.setForeground(Color.black);
                    if (searchtext.contains(":")) {
                        searchstring = searchtext.substring(searchtext.indexOf(":") + 1).replace(",", "");
                    } else {
                        chromDraw.repaint();
                        searchstring = searchtext.replace(",", "");
                    }

                    if (!searchstring.contains("-")) {
                        try {
                            searchStart = Integer.parseInt(searchstring);
                        } catch (Exception ex) {

                        }
                        searchEnd = -1;
                    } else {
                        try {
                            searchStart = Integer
                                    .parseInt(searchstring.substring(0, searchstring.indexOf("-")));
                            searchEnd = Integer.parseInt(searchstring.substring(searchstring.indexOf("-") + 1));
                        } catch (Exception ex) {

                        }
                    }
                    chromDraw.repaint();

                } else {
                    chromDraw.repaint();
                    searchField.setForeground(Color.red);
                    searchStart = -1;
                    searchEnd = -1;
                }
            }
        });

        try {

            A = Toolkit.getDefaultToolkit().getImage(getClass().getResource("SELEX/A.png"));
            C = Toolkit.getDefaultToolkit().getImage(getClass().getResource("SELEX/C.png"));
            G = Toolkit.getDefaultToolkit().getImage(getClass().getResource("SELEX/G.png"));
            T = Toolkit.getDefaultToolkit().getImage(getClass().getResource("SELEX/T.png"));

        } catch (Exception e) {
            e.printStackTrace();
        }
        ErrorLog.main(args);

        this.setBackground(Color.black);
        UIManager.put("FileChooser.readOnly", Boolean.TRUE);

        panel.setBackground(Draw.sidecolor);
        panel.setBorder(BorderFactory.createLineBorder(Color.white));
        searchField.addKeyListener(this);

        frame.addKeyListener(this);
        frame.getContentPane().setBackground(Color.black);

        glassPane.addMouseListener(this);
        glassPane.addMouseMotionListener(new MouseMotionListener() {

            @Override
            public void mouseDragged(MouseEvent arg0) {

            }

            @Override
            public void mouseMoved(MouseEvent event) {

                // g.drawRect(drawScroll.getWidth()/2-Main.canceltextwidth/2-Main.defaultFontSize/2, Main.drawScroll.getViewport().getHeight()*2/3+Draw.loadingFont.getSize()*3-Main.defaultFontSize/4, Main.canceltextwidth+Main.defaultFontSize, Draw.loadingFont.getSize()+Main.defaultFontSize/2);                

                if (drawCanvas.loading
                        && event.getX() > drawScroll.getWidth() / 2 - Main.canceltextwidth / 2
                                - Main.defaultFontSize / 2
                        && event.getX() < drawScroll.getWidth() / 2 + Main.canceltextwidth / 2
                                + Main.defaultFontSize / 2
                        && event.getY() > frame.getHeight() * 1 / 3 + Draw.loadingFont.getSize() * 3
                                - Main.defaultFontSize / 4
                        && event.getY() < frame.getHeight() * 1 / 3 + Draw.loadingFont.getSize() * 4
                                + Main.defaultFontSize / 2) {
                    if (!Main.cancelhover) {
                        Main.cancelhover = true;
                        Main.glassPane.requestFocus();
                    }
                } else {
                    if (Main.cancelhover) {
                        Main.cancelhover = false;
                        Main.glassPane.requestFocus(false);
                    }
                }
            }
        });

        background.put((byte) 'A', 0.3);
        background.put((byte) 'C', 0.2);
        background.put((byte) 'G', 0.2);
        background.put((byte) 'T', 0.3);

        bases = new Hashtable<String, String>();
        bases.put("A", "A");
        bases.put("C", "C");
        bases.put("G", "G");
        bases.put("T", "T");
        bases.put("N", "N");
        bases.put("delA", "delA");
        bases.put("delC", "delC");
        bases.put("delG", "delG");
        bases.put("delT", "delT");
        bases.put("insA", "insA");
        bases.put("insC", "insC");
        bases.put("insG", "insG");
        bases.put("insT", "insT");

        chromDraw = new ChromDraw(drawWidth, chromHeight);

        VariantCaller.main(argsit);
        PeakCaller.main(argsit);
        tablebrowser = new TableBrowser();
        bedconverter = new BEDconvert();

        try {

            File annodir;

            File[] annotations;
            addGenome.addMouseListener(this);
            genome = new JMenu("Genomes");
            genome.setName("genomeMenu");
            genome.add(addGenome);
            genome.addComponentListener(this);
            File[] fastadir;
            String[] empty = {};

            refModel = new DefaultComboBoxModel<String>(empty);

            refDropdown = new SteppedComboBox(refModel);
            refDropdown.addMouseListener(this);
            String[] emptygenes = {};
            refDropdown.addActionListener(refDropActionListener);

            geneModel = new DefaultComboBoxModel<String>(emptygenes);
            geneDropdown = new SteppedComboBox(geneModel);
            geneDropdown.addMouseListener(this);
            if (genomes != null) {
                for (int i = 0; i < genomes.length; i++) {
                    if (!genomes[i].isDirectory()) {
                        continue;
                    }
                    annodir = new File(genomes[i].getAbsolutePath() + "/annotation/");
                    if (genomes[i].isDirectory()) {
                        fastadir = genomes[i].listFiles();
                        for (int f = 0; f < fastadir.length; f++) {
                            if (fastadir[f].isDirectory()) {
                                continue;
                            }
                            if (fastadir[f].getName().contains(".fai")) {
                                continue;
                            } else if (fastadir[f].getName().contains(".fa")) {
                                fastahash.put(genomes[i].getName(), fastadir[f]);
                            }
                        }
                    }

                    annotations = annodir.listFiles();
                    genomehash.put(genomes[i].getName(), new ArrayList<File>());

                    refModel.addElement(genomes[i].getName());
                    if (genomes[i].getName().length() > reflength) {
                        reflength = genomes[i].getName().length();
                    }
                    JMenu addMenu = new JMenu(genomes[i].getName());
                    addMenu.addMouseListener(this);
                    addMenu.setName(genomes[i].getName());
                    JMenuItem addAnnotation = new JMenuItem("Add new annotation file...");
                    addAnnotation.addMouseListener(this);
                    addAnnotation.setName("add_annotation");
                    addMenu.add(addAnnotation);
                    JLabel addLabel = new JLabel("  Select annotation: ");
                    labels.add(addLabel);
                    addMenu.add(addLabel);
                    addMenu.add(new JSeparator());

                    genome.add(addMenu);
                    addMenu.addComponentListener(this);
                    if (annotations != null) {
                        for (int j = 0; j < annotations.length; j++) {
                            annofiles = annotations[j].listFiles();
                            for (int f = 0; f < annofiles.length; f++) {
                                if (annofiles[f].getName().endsWith(".bed.gz")) {
                                    if (annofiles[f].getName()
                                            .substring(0, annofiles[f].getName().indexOf(".bed.gz"))
                                            .length() > annolength) {
                                        annolength = annofiles[f].getName().length();
                                    }

                                    genomehash.get(genomes[i].getName()).add(annofiles[f].getAbsoluteFile());
                                    JMenuItem additem = new JMenuItem(annofiles[f].getName().substring(0,
                                            annofiles[f].getName().indexOf(".bed.gz")));
                                    additem.setName(annofiles[f].getName().substring(0,
                                            annofiles[f].getName().indexOf(".bed.gz")));
                                    additem.addMouseListener(this);
                                    addMenu.add(additem);
                                    additem.addComponentListener(this);
                                    break;
                                }
                            }
                        }
                    }
                }
                refModel.addElement("Add new reference...");

            }

            if (genomes.length == 0) {
                /*if(Launcher.firstStart) {
                   Main.writeToConfig("FirstStart=false");
                }*/
                AddGenome.createAndShowGUI();
                AddGenome.frame.setTitle("Add new genome");

                AddGenome.remove.setEnabled(false);
                AddGenome.download.setEnabled(false);

                AddGenome.frame.setLocation((int) (screenSize.getWidth() / 2 - AddGenome.frame.getWidth() / 2),
                        (int) (screenSize.getHeight() / 6));

                AddGenome.frame.setState(JFrame.NORMAL);
                AddGenome.frame.setVisible(true);
                AddGenome.frame.setAlwaysOnTop(true);
                /*
                WelcomeScreen.main(args);
                WelcomeScreen.frame.setVisible(true);
                WelcomeScreen.frame.setLocation(frame.getLocationOnScreen().x+frame.getWidth()/2 - WelcomeScreen.frame.getWidth()/2, frame.getLocationOnScreen().y+frame.getHeight()/6);
                */
                if (genomes.length != 0) {
                    if (!genomehash.containsKey(defaultGenome)) {

                        setChromDrop(genomes[0].getName());
                        defaultGenome = genomes[0].getName();
                    } else {

                        setChromDrop(defaultGenome);
                    }
                    getBands();
                    getExons();
                } else {
                    setChromDrop(null);
                }
            } else {
                if (!genomehash.containsKey(defaultGenome)) {

                    setChromDrop(genomes[0].getName());
                    defaultGenome = genomes[0].getName();

                } else {

                    setChromDrop(defaultGenome);
                }
                getBands();
                getExons();
            }

            if (Launcher.firstStart) {

                WelcomeScreen.createAndShowGUI();
                WelcomeScreen.frame.setLocation(
                        (int) (screenSize.getWidth() / 2 - WelcomeScreen.frame.getWidth() / 2),
                        (int) (screenSize.getHeight() / 6));
                WelcomeScreen.frame.setVisible(true);
            }
            setMenuBar();
            setButtons();
            Settings.main(args);

            // Settings.main(args);
            frame.requestFocus();

            drawCanvas.addKeyListener(this);
            bedCanvas.addKeyListener(this);
            setFonts();
            chromLabel.setText("Chromosome " + chromosomeDropdown.getSelectedItem().toString());
            CheckUpdates check = new CheckUpdates();
            check.execute();
            //   Main.drawCanvas.loading("test");
            Main.drawCanvas.splits.get(0)
                    .setCytoImage(Main.chromDraw.createBands(Main.drawCanvas.splits.get(0)));
        } catch (Exception e) {
            e.printStackTrace();
        }

    } catch (Exception ex) {
        ex.printStackTrace();
        Main.showError(ex.getMessage(), "Error");

    }

}

From source file:app.RunApp.java

/**
 * Action when mouse released of Co-ocurrence panel
 * //from   w w  w  .j a  v a  2 s.  c  o  m
 * @param evt Event
 */
private void panelCoOcurrenceMouseReleased(java.awt.event.MouseEvent evt) {//GEN-FIRST:event_panelCoOcurrenceMouseReleased
    if (evt.getButton() == MouseEvent.BUTTON3) {
        jPopupMenu1.removeAll();

        JMenuItem saver = new JMenuItem("Save as...");

        saver.addActionListener(new java.awt.event.ActionListener() {
            @Override
            public void actionPerformed(java.awt.event.ActionEvent evt) {
                try {
                    saveCoocurrenceGraph();
                } catch (AWTException | IOException ex) {
                    Logger.getLogger(RunApp.class.getName()).log(Level.SEVERE, null, ex);
                }
            }
        });

        jPopupMenu1.add(saver);
        jPopupMenu1.show(evt.getComponent(), evt.getX(), evt.getY());
    }
}

From source file:com.peterbochs.PeterBochsDebugger.java

private void jELFTableMouseClicked(MouseEvent evt) {
    if (SwingUtilities.isRightMouseButton(evt)) {
        // select
        Point p = evt.getPoint();
        int rowNumber = elfTable.rowAtPoint(p);
        int columnNumber = elfTable.columnAtPoint(p);
        ListSelectionModel model = elfTable.getSelectionModel();
        model.setSelectionInterval(rowNumber, rowNumber);
        elfTable.getColumnModel().getSelectionModel().setSelectionInterval(columnNumber, columnNumber);
        // end select

        getJELFTablePopupMenu().show(evt.getComponent(), evt.getX(), evt.getY());
    }/*from w  w w .  j  ava2s.c  o  m*/
}

From source file:com.peterbochs.PeterBochsDebugger.java

private void jHexTable1MouseClicked(MouseEvent evt) {
    if (SwingUtilities.isRightMouseButton(evt)) {
        // select
        Point p = evt.getPoint();
        int rowNumber = jHexTable1.rowAtPoint(p);
        int columnNumber = jHexTable1.columnAtPoint(p);
        ListSelectionModel model = jHexTable1.getSelectionModel();
        model.setSelectionInterval(rowNumber, rowNumber);
        jHexTable1.getColumnModel().getSelectionModel().setSelectionInterval(columnNumber, columnNumber);
        // end select

        getJHexTablePopupMenu().show(evt.getComponent(), evt.getX(), evt.getY());
    }/*from   w  w  w.ja  va  2 s  .  co  m*/
}

From source file:com.peterbochs.PeterBochsDebugger.java

private void breakpointTableMouseClicked(MouseEvent evt) {
    if (SwingUtilities.isRightMouseButton(evt)) {
        // select
        Point p = evt.getPoint();
        int rowNumber = breakpointTable.rowAtPoint(p);
        int columnNumber = breakpointTable.columnAtPoint(p);
        ListSelectionModel model = breakpointTable.getSelectionModel();
        model.setSelectionInterval(rowNumber, rowNumber);
        breakpointTable.getColumnModel().getSelectionModel().setSelectionInterval(columnNumber, columnNumber);
        // end select

        getJBreakpointPopupMenu().show(evt.getComponent(), evt.getX(), evt.getY());
    }//from ww  w .j  a  va 2s . co m
}

From source file:com.peterbochs.PeterBochsDebugger.java

private void jSearchMemoryTableMouseClicked(MouseEvent evt) {
    if (SwingUtilities.isRightMouseButton(evt)) {
        // select
        Point p = evt.getPoint();
        int rowNumber = jSearchMemoryTable.rowAtPoint(p);
        int columnNumber = jSearchMemoryTable.columnAtPoint(p);
        ListSelectionModel model = jSearchMemoryTable.getSelectionModel();
        model.setSelectionInterval(rowNumber, rowNumber);
        jSearchMemoryTable.getColumnModel().getSelectionModel().setSelectionInterval(columnNumber,
                columnNumber);/*from   ww  w.j  a v  a  2  s . com*/
        // end select

        getJSearchMemoryTablePopupMenu().show(evt.getComponent(), evt.getX(), evt.getY());
    }
}

From source file:com.peterbochs.PeterBochsDebugger.java

public void instructionTableMouseClicked(MouseEvent evt) {
    if (SwingUtilities.isRightMouseButton(evt)) {
        JTable jTable = (JTable) evt.getSource();

        if (jTable == instructionTable) {
            Global.clickedWhichInstructionPanel = 0;
        } else {/*  w w w.  jav a2  s. c  om*/
            Global.clickedWhichInstructionPanel = 1;
        }

        // select
        Point p = evt.getPoint();
        int rowNumber = jTable.rowAtPoint(p);
        int columnNumber = jTable.columnAtPoint(p);
        ListSelectionModel model = jTable.getSelectionModel();
        model.setSelectionInterval(rowNumber, rowNumber);

        jTable.getColumnModel().getSelectionModel().setSelectionInterval(columnNumber, columnNumber);
        // end select

        getJInstructionPanelPopupMenu().show(evt.getComponent(), evt.getX(), evt.getY());
    }
}