List of usage examples for com.vaadin.ui Label setWidth
@Override
public void setWidth(String width)
From source file:probe.com.view.body.QuantCompareDataLayout.java
private VerticalLayout initProteinsDataCapture(int width) { VerticalLayout proteinsDataCapturingMainLayout = new VerticalLayout(); proteinsDataCapturingMainLayout.setSpacing(true); proteinsDataCapturingMainLayout.setMargin(true); String containerWidth = ((width * 2) + 10) + "px"; proteinsDataCapturingMainLayout.setWidth(containerWidth); proteinsDataCapturingMainLayout.setSpacing(true); Label titleLabel = new Label("2. Insert UniProt Proteins Accessions"); titleLabel.setContentMode(ContentMode.HTML); titleLabel.setStyleName("normalheader"); titleLabel.setHeight("20px"); proteinsDataCapturingMainLayout.addComponent(titleLabel); proteinsDataCapturingMainLayout.setComponentAlignment(titleLabel, Alignment.TOP_LEFT); GridLayout insertProteinsLayout = new GridLayout(3, 3); proteinsDataCapturingMainLayout.addComponent(insertProteinsLayout); insertProteinsLayout.setSpacing(true); insertProteinsLayout.setMargin(new MarginInfo(false, false, false, false)); insertProteinsLayout.setWidth(containerWidth); HorizontalLayout hlo1 = new HorizontalLayout(); hlo1.setWidth("100%"); hlo1.setMargin(new MarginInfo(false, true, false, false)); Label highLabel = new Label("<font color='#cc0000'> High</font>"); highLabel.setWidth("40px"); highLabel.setContentMode(ContentMode.HTML); hlo1.addComponent(highLabel);/* w w w.j a v a2 s . c o m*/ HorizontalLayout hlo2 = new HorizontalLayout(); hlo2.setWidth("100%"); hlo2.setMargin(new MarginInfo(false, true, false, false)); Label stableLabel = new Label("<font color='#018df4'> Stable</font>"); stableLabel.setWidth("50px"); stableLabel.setContentMode(ContentMode.HTML); hlo2.addComponent(stableLabel); HorizontalLayout hlo3 = new HorizontalLayout(); hlo3.setWidth("100%"); hlo3.setMargin(new MarginInfo(false, true, false, false)); Label lowLabel = new Label("<font color='#009900'> Low</font>"); lowLabel.setWidth("40px"); lowLabel.setContentMode(ContentMode.HTML); hlo3.addComponent(lowLabel); insertProteinsLayout.addComponent(hlo1, 0, 0); insertProteinsLayout.setComponentAlignment(hlo1, Alignment.MIDDLE_CENTER); insertProteinsLayout.addComponent(hlo2, 1, 0); insertProteinsLayout.setComponentAlignment(hlo2, Alignment.MIDDLE_CENTER); insertProteinsLayout.addComponent(hlo3, 2, 0); insertProteinsLayout.setComponentAlignment(hlo3, Alignment.MIDDLE_CENTER); highTextArea.setWidth("100%"); highTextArea.setHeight("200px"); insertProteinsLayout.addComponent(highTextArea, 0, 1); insertProteinsLayout.setComponentAlignment(highTextArea, Alignment.MIDDLE_CENTER); stableTextArea.setWidth("100%"); stableTextArea.setHeight("200px"); insertProteinsLayout.addComponent(stableTextArea, 1, 1); insertProteinsLayout.setComponentAlignment(stableTextArea, Alignment.MIDDLE_CENTER); lowTextArea.setWidth("100%"); lowTextArea.setHeight("200px"); insertProteinsLayout.addComponent(lowTextArea, 2, 1); insertProteinsLayout.setComponentAlignment(lowTextArea, Alignment.MIDDLE_CENTER); VerticalLayout clear1 = new VerticalLayout(); hlo1.addComponent(clear1); clear1.setDescription("Clear field"); clear1.setStyleName("clearfieldbtn"); clear1.setWidth("20px"); clear1.setHeight("20px"); // insertProteinsLayout.addComponent(clear1, 0, 2); hlo1.setComponentAlignment(clear1, Alignment.MIDDLE_RIGHT); clear1.addLayoutClickListener(new LayoutEvents.LayoutClickListener() { @Override public void layoutClick(LayoutEvents.LayoutClickEvent event) { highTextArea.clear(); } }); VerticalLayout clear2 = new VerticalLayout(); hlo2.addComponent(clear2); clear2.setDescription("Clear field"); clear2.setStyleName("clearfieldbtn"); clear2.setWidth("20px"); clear2.setHeight("20px"); clear2.addLayoutClickListener(new LayoutEvents.LayoutClickListener() { @Override public void layoutClick(LayoutEvents.LayoutClickEvent event) { stableTextArea.clear(); } }); hlo2.setComponentAlignment(clear2, Alignment.MIDDLE_RIGHT); VerticalLayout clear3 = new VerticalLayout(); hlo3.addComponent(clear3); clear3.setDescription("Clear field"); clear3.setStyleName("clearfieldbtn"); clear3.setWidth("20px"); clear3.setHeight("20px"); clear3.addLayoutClickListener(new LayoutEvents.LayoutClickListener() { @Override public void layoutClick(LayoutEvents.LayoutClickEvent event) { lowTextArea.clear(); } }); hlo3.setComponentAlignment(clear3, Alignment.MIDDLE_RIGHT); Label errorLabel = new Label(); proteinsDataCapturingMainLayout.addComponent(errorLabel); HorizontalLayout btnsLayout = new HorizontalLayout(); btnsLayout.setSpacing(true); btnsLayout.setMargin(new MarginInfo(true, false, false, false)); proteinsDataCapturingMainLayout.addComponent(btnsLayout); proteinsDataCapturingMainLayout.setComponentAlignment(btnsLayout, Alignment.MIDDLE_RIGHT); Button sampleBtn = new Button("Sample"); sampleBtn.setStyleName(Reindeer.BUTTON_SMALL); btnsLayout.addComponent(sampleBtn); sampleBtn.addClickListener(new Button.ClickListener() { @Override public void buttonClick(Button.ClickEvent event) { reset(); highTextArea.setValue(highAcc); lowTextArea.setValue(lowAcc); stableTextArea.setValue(stableAcc); diseaseGroupsListA.select("Group A"); diseaseGroupsListB.select("Group B"); compareBtn.focus(); } }); Button resetBtn = new Button("Reset"); resetBtn.setStyleName(Reindeer.BUTTON_SMALL); btnsLayout.addComponent(resetBtn); resetBtn.setId("resetBtn"); resetBtn.addClickListener(this); compareBtn = new Button("Compare"); compareBtn.setStyleName(Reindeer.BUTTON_SMALL); btnsLayout.addComponent(compareBtn); compareBtn.setId("compareBtn"); compareBtn.addClickListener(this); // highTextArea.setValue(highAcc); // lowTextArea.setValue(lowAcc); // stableTextArea.setValue(stableAcc); return proteinsDataCapturingMainLayout; }
From source file:probe.com.view.body.quantdatasetsoverview.diseasegroupsfilters.ComparisonsSelectionOverviewBubbleChart.java
public ComparisonsSelectionOverviewBubbleChart(final QuantCentralManager Quant_Central_Manager, final CSFPRHandler CSFPR_Handler, int chartWidth, int chartHeight, Set<QuantDiseaseGroupsComparison> selectedComparisonList, List<QuantProtein> searchQuantificationProtList) { userDataCounter = 0;/*from ww w .j a v a 2 s . co m*/ this.searchQuantificationProtList = searchQuantificationProtList; Map<String, String> diseaseHashedColorMap = Quant_Central_Manager.getDiseaseHashedColorMap(); for (String str : diseaseHashedColorMap.keySet()) { diseaseColorMap.put(str, Color.decode(diseaseHashedColorMap.get(str))); } this.width = chartWidth; this.height = 600; this.CSFPR_Handler = CSFPR_Handler; this.setWidth(width + "px"); this.setHeightUndefined(); this.Quant_Central_Manager = Quant_Central_Manager; this.Quant_Central_Manager.registerStudySelectionListener(ComparisonsSelectionOverviewBubbleChart.this); this.setSpacing(true); //init toplayout topLayout.setHeight(30 + "px"); topLayout.setSpacing(true); topLayout.setMargin(new MarginInfo(false, false, true, false)); this.addComponent(topLayout); Label overviewLabel = new Label("<font style='margin-left :50px;'>Overview</font> "); overviewLabel.setContentMode(ContentMode.HTML); topLayout.addComponent(overviewLabel); overviewLabel.setStyleName("subtitle"); overviewLabel.setWidth("120px"); InfoPopupBtn info = new InfoPopupBtn( "The bubble chart give an overview for the proteins existed in the selected comparisons.<br/>The diameter of the bubble represents the number of the proteins in the selected comparison and the color represents the trend<br/>"); info.setWidth("16px"); info.setHeight("16px"); topLayout.addComponent(info); this.topLayout.setVisible(false); //end of toplayout //init chartlayout this.chartLayoutContainer.setVisible(false); this.addComponent(chartLayoutContainer); chartLayoutContainer.setWidth(width + "px"); chartLayoutContainer.setHeight(height + "px"); chartLayoutContainer.addComponent(chartImage, "left: " + 0 + "px; top: " + 0 + "px;"); chartLayoutContainer.addComponent(chartLayout, "left: " + 0 + "px; top: " + 0 + "px;"); chartLayout.setWidth(width + "px"); chartLayout.setHeight(height + "px"); chartLayout.addLayoutClickListener(ComparisonsSelectionOverviewBubbleChart.this); //end of chartlayout //init bottomlayout bottomLayout.setWidth("100%"); this.addComponent(bottomLayout); this.setComponentAlignment(bottomLayout, Alignment.BOTTOM_RIGHT); bottomLayout.setVisible(false); HorizontalLayout btnContainerLayout = new HorizontalLayout(); btnContainerLayout.setSpacing(true); // btnContainerLayout.setMargin(new MarginInfo(false, false, false, false)); btnContainerLayout.setWidthUndefined(); btnContainerLayout.setHeightUndefined(); // btnContainerLayout.addStyleName("leftspacer"); bottomLayout.addComponent(btnContainerLayout); bottomLayout.setComponentAlignment(btnContainerLayout, Alignment.TOP_RIGHT); TrendLegend legendLayout = new TrendLegend("bubblechart"); legendLayout.setWidthUndefined(); legendLayout.setHeight("24px"); btnContainerLayout.addComponent(legendLayout); btnContainerLayout.setComponentAlignment(legendLayout, Alignment.TOP_RIGHT); // btnContainerLayout.setExpandRatio(legendLayout, 600); // btnContainerLayout.setExpandRatio(btnContainerLayout, 210); // VerticalLayout stableBtnWrapper = new VerticalLayout(); //// stableBtnWrapper.setWidth("64px"); // HorizontalLayout stableBtn = new HorizontalLayout(); // stableBtnWrapper.addComponent(stableBtn); // stableBtnWrapper.setComponentAlignment(stableBtn, Alignment.TOP_LEFT); // btnContainerLayout.addComponent(stableBtnWrapper); groupSwichBtn = new GroupSwichBtn(Quant_Central_Manager, searchQuantificationProtList); btnContainerLayout.addComponent(groupSwichBtn); final VerticalLayout appliedIcon = new VerticalLayout(); appliedIcon.setStyleName("appliedicon"); appliedIcon.setWidth("24px"); appliedIcon.setHeight("24px"); appliedIcon.setDescription("Hide stable proteins"); btnContainerLayout.addComponent(appliedIcon); // stableBtn.setStyleName("stablebtn"); // stableBtn.setHeight("24px"); // Label stableLabel = new Label("Equal"); // stableLabel.setWidth("44px"); // stableBtn.addComponent(stableLabel); appliedIcon.addLayoutClickListener(new LayoutEvents.LayoutClickListener() { @Override public void layoutClick(LayoutEvents.LayoutClickEvent event) { if (appliedIcon.getStyleName().equalsIgnoreCase("appliedicon")) { appliedIcon.setStyleName("unappliedicon"); Quant_Central_Manager.updateSignificantOnlySelection(true); appliedIcon.setDescription("Show stable proteins"); } else { appliedIcon.setStyleName("appliedicon"); Quant_Central_Manager.updateSignificantOnlySelection(false); appliedIcon.setDescription("Hide stable proteins"); } } }); exportPdfBtn = new Button(""); exportPdfBtn.setWidth("24px"); exportPdfBtn.setHeight("24px"); exportPdfBtn.setPrimaryStyleName("exportpdfbtn"); exportPdfBtn.setDescription("Export chart image"); StreamResource myResource = createResource(); FileDownloader fileDownloader = new FileDownloader(myResource); fileDownloader.extend(exportPdfBtn); btnContainerLayout.addComponent(exportPdfBtn); VerticalLayout unselectAllBtn = new VerticalLayout(); unselectAllBtn.setStyleName("unselectallbtn"); btnContainerLayout.addComponent(unselectAllBtn); btnContainerLayout.setComponentAlignment(unselectAllBtn, Alignment.TOP_LEFT); unselectAllBtn.setDescription("Clear selection"); unselectAllBtn.addLayoutClickListener(new LayoutEvents.LayoutClickListener() { @Override public void layoutClick(LayoutEvents.LayoutClickEvent event) { Quant_Central_Manager.setBubbleChartQuantProteinsSelection(new HashSet<String>(), ""); resetChart(); } }); final VerticalLayout selectMultiBtn = new VerticalLayout(); selectMultiBtn.setStyleName("selectmultiselectedbtn"); btnContainerLayout.addComponent(selectMultiBtn); btnContainerLayout.setComponentAlignment(selectMultiBtn, Alignment.TOP_LEFT); selectMultiBtn.setDescription("Multiple selection"); activeMultiSelect = true; selectMultiBtn.addLayoutClickListener(new LayoutEvents.LayoutClickListener() { @Override public void layoutClick(LayoutEvents.LayoutClickEvent event) { if (selectMultiBtn.getStyleName().equalsIgnoreCase("selectmultiselectedbtn")) { selectMultiBtn.setStyleName("selectmultibtn"); activeMultiSelect = false; } else { selectMultiBtn.setStyleName("selectmultiselectedbtn"); activeMultiSelect = true; } } }); //end of btns layout //init empty layout emptySelectionLayout = new VerticalLayout(); this.addComponent(emptySelectionLayout); emptySelectionLayout.setWidth(100 + "%"); emptySelectionLayout.setHeightUndefined(); VerticalLayout spacer = new VerticalLayout(); spacer.setHeight("100px"); spacer.setWidth("10px"); spacer.setStyleName(Reindeer.LAYOUT_WHITE); emptySelectionLayout.addComponent(spacer); emptySelectionLayout.setComponentAlignment(spacer, Alignment.BOTTOM_RIGHT); Label startLabel = new Label( "<center><h2 style='color:gray;'><b>Select comparison from the table</b></h2></center>"); startLabel.setContentMode(ContentMode.HTML); emptySelectionLayout.addComponent(startLabel); emptySelectionLayout.setComponentAlignment(startLabel, Alignment.MIDDLE_CENTER); Image handleft = new Image(); handleft.setSource(new ThemeResource("img/handleft.png")); emptySelectionLayout.addComponent(handleft); emptySelectionLayout.setComponentAlignment(handleft, Alignment.MIDDLE_CENTER); //init bubble chart }
From source file:probe.com.view.body.quantdatasetsoverview.diseasegroupsfilters.ComparisonsSelectionOverviewBubbleChart.java
public ComparisonsSelectionOverviewBubbleChart(final QuantCentralManager Quant_Central_Manager, final CSFPRHandler CSFPR_Handler, int chartWidth, int chartHeight, Set<QuantDiseaseGroupsComparison> selectedComparisonList, List<QuantProtein> searchQuantificationProtList, QuantDiseaseGroupsComparison userCustomizedComparison) { this.userCustomizedComparison = userCustomizedComparison; userDataCounter = 1;// w w w . ja v a2s .com this.searchQuantificationProtList = searchQuantificationProtList; Map<String, String> diseaseHashedColorMap = Quant_Central_Manager.getDiseaseHashedColorMap(); for (String str : diseaseHashedColorMap.keySet()) { diseaseColorMap.put(str, Color.decode(diseaseHashedColorMap.get(str))); } this.width = chartWidth; this.height = 600; this.CSFPR_Handler = CSFPR_Handler; this.setWidth(width + "px"); this.setHeightUndefined(); this.Quant_Central_Manager = Quant_Central_Manager; this.Quant_Central_Manager.registerStudySelectionListener(ComparisonsSelectionOverviewBubbleChart.this); this.setSpacing(true); //init toplayout topLayout.setHeight(30 + "px"); topLayout.setSpacing(true); topLayout.setMargin(new MarginInfo(false, false, true, false)); this.addComponent(topLayout); Label overviewLabel = new Label("<font style='margin-left :50px;'>Overview</font> "); overviewLabel.setContentMode(ContentMode.HTML); topLayout.addComponent(overviewLabel); overviewLabel.setStyleName("subtitle"); overviewLabel.setWidth("120px"); InfoPopupBtn info = new InfoPopupBtn( "The bubble chart give an overview for the proteins existed in the selected comparisons.<br/>The diameter of the bubble represents the number of the proteins in the selected comparison and the color represents the trend<br/>"); info.setWidth("16px"); info.setHeight("16px"); topLayout.addComponent(info); //end of toplayout //init chartlayout this.chartLayoutContainer.setVisible(false); this.addComponent(chartLayoutContainer); this.addComponent(chartLayoutContainer); chartLayoutContainer.setWidth(width + "px"); chartLayoutContainer.setHeight(height + "px"); chartLayoutContainer.addComponent(chartImage, "left: " + 0 + "px; top: " + 0 + "px;"); chartLayoutContainer.addComponent(chartLayout, "left: " + 0 + "px; top: " + 0 + "px;"); chartLayout.setWidth(width + "px"); chartLayout.setHeight(height + "px"); chartLayout.addLayoutClickListener(ComparisonsSelectionOverviewBubbleChart.this); //end of chartlayout //init bottomlayout bottomLayout.setWidth("100%"); this.addComponent(bottomLayout); this.setComponentAlignment(bottomLayout, Alignment.BOTTOM_RIGHT); bottomLayout.setVisible(false); HorizontalLayout btnContainerLayout = new HorizontalLayout(); btnContainerLayout.setSpacing(true); // btnContainerLayout.setMargin(new MarginInfo(false, false, false, false)); btnContainerLayout.setWidthUndefined(); btnContainerLayout.setHeightUndefined(); // btnContainerLayout.addStyleName("leftspacer"); bottomLayout.addComponent(btnContainerLayout); bottomLayout.setComponentAlignment(btnContainerLayout, Alignment.TOP_RIGHT); TrendLegend legendLayout = new TrendLegend("bubblechart"); legendLayout.setWidthUndefined(); legendLayout.setHeight("24px"); btnContainerLayout.addComponent(legendLayout); btnContainerLayout.setComponentAlignment(legendLayout, Alignment.TOP_RIGHT); Quant_Central_Manager.insertNoftfication("Quantitative Datasets", "Remeber you can flip the disease group comparisons using (Swich disease groups button)<img src='VAADIN/themes/dario-theme/img/flip-v-updated.png' height='25px' width='25' alt='Reorder and select' Align='center'/> ", width, width, "flipnotification"); // btnContainerLayout.setExpandRatio(legendLayout, 600); // btnContainerLayout.setExpandRatio(btnContainerLayout, 210); // VerticalLayout stableBtnWrapper = new VerticalLayout(); //// stableBtnWrapper.setWidth("64px"); // HorizontalLayout stableBtn = new HorizontalLayout(); // stableBtnWrapper.addComponent(stableBtn); // stableBtnWrapper.setComponentAlignment(stableBtn, Alignment.TOP_LEFT); // btnContainerLayout.addComponent(stableBtnWrapper); groupSwichBtn = new GroupSwichBtn(Quant_Central_Manager, searchQuantificationProtList); btnContainerLayout.addComponent(groupSwichBtn); final VerticalLayout appliedIcon = new VerticalLayout(); appliedIcon.setStyleName("appliedicon"); appliedIcon.setWidth("24px"); appliedIcon.setHeight("24px"); appliedIcon.setDescription("Hide stable proteins"); btnContainerLayout.addComponent(appliedIcon); // stableBtn.setStyleName("stablebtn"); // stableBtn.setHeight("24px"); // Label stableLabel = new Label("Equal"); // stableLabel.setWidth("44px"); // stableBtn.addComponent(stableLabel); appliedIcon.addLayoutClickListener(new LayoutEvents.LayoutClickListener() { @Override public void layoutClick(LayoutEvents.LayoutClickEvent event) { if (appliedIcon.getStyleName().equalsIgnoreCase("appliedicon")) { appliedIcon.setStyleName("unappliedicon"); Quant_Central_Manager.updateSignificantOnlySelection(true); appliedIcon.setDescription("Show stable proteins"); } else { appliedIcon.setStyleName("appliedicon"); Quant_Central_Manager.updateSignificantOnlySelection(false); appliedIcon.setDescription("Hide stable proteins"); } } }); exportPdfBtn = new Button(""); exportPdfBtn.setWidth("24px"); exportPdfBtn.setHeight("24px"); exportPdfBtn.setPrimaryStyleName("exportpdfbtn"); exportPdfBtn.setDescription("Export chart image"); StreamResource myResource = createResource(); FileDownloader fileDownloader = new FileDownloader(myResource); fileDownloader.extend(exportPdfBtn); btnContainerLayout.addComponent(exportPdfBtn); VerticalLayout unselectAllBtn = new VerticalLayout(); unselectAllBtn.setStyleName("unselectallbtn"); btnContainerLayout.addComponent(unselectAllBtn); btnContainerLayout.setComponentAlignment(unselectAllBtn, Alignment.TOP_LEFT); unselectAllBtn.setDescription("Clear selection"); unselectAllBtn.addLayoutClickListener(new LayoutEvents.LayoutClickListener() { @Override public void layoutClick(LayoutEvents.LayoutClickEvent event) { Quant_Central_Manager.setBubbleChartQuantProteinsSelection(new HashSet<String>(), ""); resetChart(); } }); final VerticalLayout selectMultiBtn = new VerticalLayout(); selectMultiBtn.setStyleName("selectmultiselectedbtn"); btnContainerLayout.addComponent(selectMultiBtn); btnContainerLayout.setComponentAlignment(selectMultiBtn, Alignment.TOP_LEFT); selectMultiBtn.setDescription("Multiple selection"); activeMultiSelect = true; selectMultiBtn.addLayoutClickListener(new LayoutEvents.LayoutClickListener() { @Override public void layoutClick(LayoutEvents.LayoutClickEvent event) { if (selectMultiBtn.getStyleName().equalsIgnoreCase("selectmultiselectedbtn")) { selectMultiBtn.setStyleName("selectmultibtn"); activeMultiSelect = false; } else { selectMultiBtn.setStyleName("selectmultiselectedbtn"); activeMultiSelect = true; } } }); //end of btns layout //init empty layout emptySelectionLayout = new VerticalLayout(); this.addComponent(emptySelectionLayout); emptySelectionLayout.setWidth(width + "px"); emptySelectionLayout.setHeightUndefined(); VerticalLayout spacer = new VerticalLayout(); spacer.setHeight("100px"); spacer.setWidth("10px"); spacer.setStyleName(Reindeer.LAYOUT_WHITE); emptySelectionLayout.addComponent(spacer); emptySelectionLayout.setComponentAlignment(spacer, Alignment.BOTTOM_RIGHT); Label startLabel = new Label( "<center><h2 style='color:gray;'><b>Select comparison from the table</b></h2></center>"); startLabel.setContentMode(ContentMode.HTML); emptySelectionLayout.addComponent(startLabel); emptySelectionLayout.setComponentAlignment(startLabel, Alignment.MIDDLE_CENTER); Image handleft = new Image(); handleft.setSource(new ThemeResource("img/handleft.png")); emptySelectionLayout.addComponent(handleft); emptySelectionLayout.setComponentAlignment(handleft, Alignment.MIDDLE_CENTER); }
From source file:probe.com.view.body.quantdatasetsoverview.diseasegroupsfilters.GroupSwichBtn.java
private void updateSelectionList() { table.removeAllComponents();/*from ww w . j a va2 s . c o m*/ updatedComparisonList.clear(); selectedComparisonList = this.Quant_Central_Manager .getUpdatedSelectedDiseaseGroupsComparisonListProteins(searchQuantificationProtList);// int row = 1; if (selectedComparisonList != null) { table.addComponent(headerI, 0, 0); table.setComponentAlignment(headerI, Alignment.MIDDLE_CENTER); table.addComponent(headerII, 2, 0); table.setComponentAlignment(headerII, Alignment.MIDDLE_CENTER); setWindowHight(selectedComparisonList.size()); for (QuantDiseaseGroupsComparison comparison : selectedComparisonList) { updatedComparisonList.add(comparison); String header = comparison.getComparisonHeader(); String updatedHeaderI = header.split(" / ")[0].split("\n")[0]; String updatedHeaderII = header.split(" / ")[1].split("\n")[0]; String diseaseColor = this.Quant_Central_Manager .getDiseaseHashedColor(header.split(" / ")[1].split("\n")[1]); Label labelI = new Label("<center><font color='" + diseaseColor + "' style='font-weight: bold;!important'>" + updatedHeaderI + "</font></center>"); Label labelII = new Label("<center><font color='" + diseaseColor + "' style='font-weight: bold;!important'>" + updatedHeaderII + "</font></center>"); labelI.setContentMode(ContentMode.HTML); labelII.setContentMode(ContentMode.HTML); labelI.setWidth("100%"); labelII.setWidth("100%"); VerticalLayout switchBtn = swichIconGenerator(); table.addComponent(labelI, 0, row); table.setComponentAlignment(labelI, Alignment.MIDDLE_CENTER); table.addComponent(switchBtn, 1, row); switchBtn.setData(row - 1); table.setComponentAlignment(switchBtn, Alignment.MIDDLE_CENTER); table.addComponent(labelII, 2, row++); table.setComponentAlignment(labelII, Alignment.MIDDLE_CENTER); } table.addComponent(btnWrapper, 2, row); table.setComponentAlignment(btnWrapper, Alignment.MIDDLE_CENTER); } // comparisonList.addValueChangeListener(GroupSwichBtn.this); }
From source file:probe.com.view.body.quantdatasetsoverview.quantproteinstabsheet.peptidescontainer.popupcomponents.PeptideSequenceContainer.java
private void addTerminalLabels(int top, int width) { VerticalLayout nTerminalEdge = new VerticalLayout(); nTerminalEdge.setWidth("19px"); nTerminalEdge.setHeight("15px"); nTerminalEdge.setStyleName("terminal"); Label nLabel = new Label("N"); nLabel.setWidth("10px"); nLabel.setStyleName("ntermlayout"); nTerminalEdge.addComponent(nLabel);/*from w ww. j a v a 2 s.co m*/ this.addComponent(nTerminalEdge, "left: " + (0) + "px; top: " + (top) + "px;"); VerticalLayout cTerminalEdge = new VerticalLayout(); cTerminalEdge.setWidth("20px"); cTerminalEdge.setHeight("15px"); cTerminalEdge.setStyleName("terminal"); Label cLabel = new Label("C"); cLabel.setStyleName("ctermlayout"); cTerminalEdge.addComponent(cLabel); cLabel.setWidth("10px"); cTerminalEdge.setComponentAlignment(cLabel, Alignment.TOP_RIGHT); this.addComponent(cTerminalEdge, "left: " + (width - 21) + "px; top: " + (top) + "px;"); }
From source file:probe.com.view.body.quantdatasetsoverview.quantproteinstabsheet.studies.PeptidesComparisonsSequenceLayout.java
/** * * @param cp/*w ww .j a v a2 s .com*/ * @param width * @param Quant_Central_Manager */ public PeptidesComparisonsSequenceLayout(QuantCentralManager Quant_Central_Manager, final DiseaseGroupsComparisonsProteinLayout cp, int width) { this.studiesMap = new LinkedHashMap<String, StudyInfoData>(); this.setColumns(4); this.setRows(3); this.setWidthUndefined(); this.setSpacing(true); this.setMargin(new MarginInfo(true, false, false, false)); comparisonTitle = new Label(); comparisonTitle.setContentMode(ContentMode.HTML); comparisonTitle.setStyleName("custChartLabelHeader"); comparisonTitle.setWidth((width - 55) + "px"); this.addComponent(comparisonTitle, 1, 0); this.setComponentAlignment(comparisonTitle, Alignment.TOP_LEFT); closeBtn = new VerticalLayout(); closeBtn.setWidth("20px"); closeBtn.setHeight("20px"); closeBtn.setStyleName("closebtn"); this.addComponent(closeBtn, 2, 0); this.setComponentAlignment(closeBtn, Alignment.TOP_RIGHT); //end of toplayout //init comparison study layout GridLayout proteinSequenceComparisonsContainer = new GridLayout(2, cp.getComparison().getDatasetIndexes().length); proteinSequenceComparisonsContainer.setWidthUndefined(); proteinSequenceComparisonsContainer.setHeightUndefined(); proteinSequenceComparisonsContainer.setStyleName(Reindeer.LAYOUT_WHITE); proteinSequenceComparisonsContainer.setSpacing(true); proteinSequenceComparisonsContainer.setMargin(new MarginInfo(true, false, false, false)); this.addComponent(proteinSequenceComparisonsContainer, 1, 1); coverageWidth = (width - 100 - 180); Map<Integer, Set<QuantPeptide>> dsQuantPepMap = new HashMap<Integer, Set<QuantPeptide>>(); for (QuantPeptide quantPep : cp.getQuantPeptidesList()) { if (!dsQuantPepMap.containsKey(quantPep.getDsKey())) { Set<QuantPeptide> subList = new HashSet<QuantPeptide>(); dsQuantPepMap.put(quantPep.getDsKey(), subList); } Set<QuantPeptide> subList = dsQuantPepMap.get(quantPep.getDsKey()); subList.add(quantPep); dsQuantPepMap.put(quantPep.getDsKey(), subList); } int numb = 0; int panelWidth = Page.getCurrent().getBrowserWindowWidth() - 100; String groupCompTitle = cp.getComparison().getComparisonHeader(); String updatedHeader = groupCompTitle.split(" / ")[0].split("\n")[0] + " / " + groupCompTitle.split(" / ")[1].split("\n")[0];//+ " ( " + groupCompTitle.split(" / ")[1].split("\n")[1] + " )"; ; final StudyInformationPopupComponent studyInformationPopupPanel = new StudyInformationPopupComponent( panelWidth, cp.getProtName(), cp.getUrl(), cp.getComparison().getComparisonFullName()); studyInformationPopupPanel.setVisible(false); LayoutEvents.LayoutClickListener studyListener = new LayoutEvents.LayoutClickListener() { @Override public void layoutClick(LayoutEvents.LayoutClickEvent event) { Integer dsId; if (event.getComponent() instanceof AbsoluteLayout) { dsId = (Integer) ((AbsoluteLayout) event.getComponent()).getData(); } else { dsId = (Integer) ((VerticalLayout) event.getComponent()).getData(); } studyInformationPopupPanel.updateContent(dsToStudyLayoutMap.get(dsId)); } }; TreeSet<QuantProtein> orderSet = new TreeSet<QuantProtein>(cp.getDsQuantProteinsMap().values()); for (QuantProtein quantProtein : orderSet) { StudyInfoData exportData = new StudyInfoData(); exportData.setCoverageWidth(coverageWidth); Label studyTitle = new Label();//"Study " + (numb + 1)); studyTitle.setStyleName("peptideslayoutlabel"); studyTitle.setHeightUndefined(); studyTitle.setWidth("200px"); Label iconTitle = new Label("#Patients (" + (quantProtein.getPatientsGroupIINumber() + quantProtein.getPatientsGroupINumber()) + ")"); exportData.setSubTitle(iconTitle.getValue()); iconTitle.setStyleName("peptideslayoutlabel"); iconTitle.setHeightUndefined(); if (quantProtein.getStringPValue().equalsIgnoreCase("Not Significant") || quantProtein.getStringFCValue().equalsIgnoreCase("Not regulated")) { iconTitle.setStyleName("notregicon"); exportData.setTrend(0); } else if (quantProtein.getStringFCValue().equalsIgnoreCase("Decreased")) { iconTitle.setStyleName("downarricon"); exportData.setTrend(-1); } else { exportData.setTrend(1); iconTitle.setStyleName("uparricon"); } iconTitle.setDescription(cp.getProteinAccssionNumber() + " : #Patients (" + (quantProtein.getPatientsGroupIINumber() + quantProtein.getPatientsGroupINumber()) + ") " + quantProtein.getStringFCValue() + " " + quantProtein.getStringPValue() + ""); VerticalLayout labelContainer = new VerticalLayout(); labelContainer.addComponent(studyTitle); labelContainer.addComponent(iconTitle); proteinSequenceComparisonsContainer.addComponent(labelContainer, 0, numb); proteinSequenceComparisonsContainer.setComponentAlignment(labelContainer, Alignment.TOP_CENTER); Map<Integer, ComparisonDetailsBean> patientGroupsNumToDsIdMap = new HashMap<Integer, ComparisonDetailsBean>(); ComparisonDetailsBean pGr = new ComparisonDetailsBean(); patientGroupsNumToDsIdMap .put((quantProtein.getPatientsGroupIINumber() + quantProtein.getPatientsGroupINumber()), pGr); QuantDatasetObject ds; ds = Quant_Central_Manager.getFullQuantDatasetMap().get(quantProtein.getDsKey()); StudyPopupLayout study = new StudyPopupLayout(panelWidth, quantProtein, ds, cp.getProteinAccssionNumber(), cp.getUrl(), cp.getProtName(), Quant_Central_Manager.getDiseaseHashedColorMap()); Set<QuantDatasetObject> qdsSet = new HashSet<QuantDatasetObject>(); qdsSet.add(ds); study.setInformationData(qdsSet, cp); dsToStudyLayoutMap.put(ds.getDsKey(), study); labelContainer.addLayoutClickListener(studyListener); labelContainer.setData(ds.getDsKey()); studyTitle.setValue("[" + (numb + 1) + "] " + ds.getAuthor()); exportData.setTitle(ds.getAuthor()); if (dsQuantPepMap.get(quantProtein.getDsKey()) == null) { Label noPeptidesInfoLabel = new Label("No Peptide Information Available "); noPeptidesInfoLabel.setHeightUndefined(); noPeptidesInfoLabel.setStyleName("peptideslayoutlabel"); VerticalLayout labelValueContainer = new VerticalLayout(); labelValueContainer.addComponent(noPeptidesInfoLabel); labelValueContainer.addLayoutClickListener(studyListener); labelValueContainer.setData(ds.getDsKey()); proteinSequenceComparisonsContainer.addComponent(labelValueContainer, 1, numb); proteinSequenceComparisonsContainer.setComponentAlignment(labelValueContainer, Alignment.TOP_CENTER); numb++; studiesMap.put((numb + 1) + ds.getAuthor(), exportData); continue; } String key = "_-_" + quantProtein.getDsKey() + "_-_" + cp.getProteinAccssionNumber() + "_-_"; PeptidesInformationOverviewLayout peptideInfoLayout = new PeptidesInformationOverviewLayout( cp.getSequence(), dsQuantPepMap.get(quantProtein.getDsKey()), coverageWidth, true, studyListener, ds.getDsKey()); exportData.setPeptidesInfoList(peptideInfoLayout.getStackedPeptides()); exportData.setLevelsNumber(peptideInfoLayout.getLevel()); hasPTM = peptideInfoLayout.isHasPTM(); peptidesInfoLayoutDSIndexMap.put(key, peptideInfoLayout); proteinSequenceComparisonsContainer.addComponent(peptideInfoLayout, 1, numb); numb++; studiesMap.put((numb + 1) + ds.getAuthor(), exportData); } String rgbColor = Quant_Central_Manager .getDiseaseHashedColor(groupCompTitle.split(" / ")[1].split("\n")[1]); comparisonTitle.setValue("<font color='" + rgbColor + "' style='font-weight: bold;'>" + updatedHeader + " (#Datasets " + numb + "/" + cp.getComparison().getDatasetIndexes().length + ")</font>"); comparisonTitle.setDescription(cp.getComparison().getComparisonFullName()); VerticalLayout bottomSpacer = new VerticalLayout(); bottomSpacer.setWidth((width - 100) + "px"); bottomSpacer.setHeight("10px"); bottomSpacer.setStyleName("dottedline"); this.addComponent(bottomSpacer, 1, 2); }
From source file:probe.com.view.core.InfoPopupBtn.java
public InfoPopupBtn(String infoText) { HorizontalLayout topLayout = new HorizontalLayout(); VerticalLayout mainBody = new VerticalLayout(); mainBody.setWidth("450px"); mainBody.addComponent(topLayout);// w w w .j av a2 s.com Label infoHeaderLabel = new Label( "<h3 style='font-family:verdana;color:black;font-weight:bold;margin-left:20px;margin-right:20px;'>Information</h3>"); infoHeaderLabel.setContentMode(ContentMode.HTML); topLayout.addComponent(infoHeaderLabel); topLayout.setWidth("100%"); Label infoLable = new Label( "<div style='text-align:justify;text-justify:inter-word;'><p style='line-height:60px; font-family:verdana;color:black;margin-left:20px;margin-right:20px;'>" + infoText + "</p></div>"); infoLable.setContentMode(ContentMode.HTML); infoLable.setWidth("450px"); mainBody.addComponent(infoLable); popupBodyLayout.addComponent(mainBody); mainBody.setStyleName("popupmainbody"); VerticalLayout closeBtn = new VerticalLayout(); closeBtn.setWidth("16px"); closeBtn.setHeight("16px"); closeBtn.setStyleName("defaultclosebtn"); topLayout.addComponent(closeBtn); topLayout.setComponentAlignment(closeBtn, Alignment.TOP_RIGHT); popupLayout = new PopupView("", popupBodyLayout); this.setStyleName("infoicon"); this.setWidth("16px"); this.setHeight("16px"); this.setDescription("Information"); this.addLayoutClickListener(InfoPopupBtn.this); this.addComponent(popupLayout); this.popupLayout.setHideOnMouseOut(false); closeBtn.addLayoutClickListener(new LayoutEvents.LayoutClickListener() { @Override public void layoutClick(LayoutEvents.LayoutClickEvent event) { popupLayout.setPopupVisible(false); } }); }
From source file:probe.com.view.core.PopupInfoBtn.java
private VerticalLayout initPopupLayout(VerticalLayout popupLayout, String header) { VerticalLayout popupBodyWrapper = new VerticalLayout(); popupBodyWrapper.setWidth("100%"); popupBodyWrapper.setHeight("100%"); VerticalLayout popupBodyLayout = new VerticalLayout(); popupBodyLayout.setWidth((popupLayout.getWidth() + 2) + "px"); popupBodyLayout.setHeightUndefined(); popupBodyLayout.setStyleName("pupupbody"); popupBodyLayout.setSpacing(true);/*from w w w . j a v a2 s . c o m*/ HorizontalLayout titleLayout = new HorizontalLayout(); titleLayout.setWidthUndefined(); titleLayout.setHeight("40px"); popupBodyLayout.addComponent(titleLayout); popupBodyLayout.addLayoutClickListener(this); Label label = new Label("<b>" + header + "</b>"); label.setStyleName("comparisonHeaders"); label.setContentMode(ContentMode.HTML); label.setWidth((popupLayout.getWidth() - 17) + "px"); titleLayout.addComponent(label); VerticalLayout closeBtn = new VerticalLayout(); closeBtn.setWidth("16px"); closeBtn.setHeight("16px"); closeBtn.setStyleName("closepanelbtn"); closeBtn.addLayoutClickListener(this); titleLayout.addComponent(closeBtn); titleLayout.setComponentAlignment(closeBtn, Alignment.TOP_RIGHT); popupLayout.setMargin(true); popupLayout.setSpacing(true); popupBodyLayout.addComponent(popupLayout); popupBodyWrapper.addComponent(popupBodyLayout); popupBodyWrapper.setComponentAlignment(popupBodyLayout, Alignment.MIDDLE_CENTER); return popupBodyWrapper; }
From source file:probe.com.view.core.QuantDataUploader.java
/** * initialize the upload unit layout//from w ww. j a va 2 s. co m */ private void initLayouts() { Label selectFileTitle = new Label( "<h4 style='font-family:verdana;font-weight:bold;'><strong aligen='center' style='font-family:verdana;color:#00000;'>Upload New File</strong></h4>"); selectFileTitle.setContentMode(ContentMode.HTML); selectFileTitle.setHeight("45px"); selectFileTitle.setWidth("100%"); this.addComponent(selectFileTitle); this.setComponentAlignment(selectFileTitle, Alignment.TOP_CENTER); upload = new Upload(null, this); upload.setStyleName("small"); upload.setVisible(true); upload.setHeight("30px"); upload.setWidth("100%"); upload.setButtonCaption("UPLOAD ADD / EDIT EXPERIMENT"); upload.addSucceededListener(this); this.addComponent(upload); }
From source file:probe.com.view.core.TextFieldFilter.java
/** * * @param controller/*from w w w . ja v a 2s . c o m*/ * @param filterId * @param filterTitle */ public TextFieldFilter(SearchingFiltersControl_t controller, int filterId, String filterTitle) { this.control = controller; this.filterId = filterId; this.setSpacing(true); okBtn = new Button("ok"); okBtn.setStyleName(Reindeer.BUTTON_SMALL); textField = new TextArea(); textField.setStyleName(Reindeer.TEXTFIELD_SMALL); textField.setHeight("60px"); textField.setWidth("200px"); textField.setInputPrompt("Please use one key-word per line"); Label captionLabel = new Label(filterTitle); captionLabel.setWidth("70px"); captionLabel.setStyleName("custLabel"); if (filterTitle != null) { textField.setDescription(filterTitle); } this.addComponent(captionLabel); this.addComponent(textField); this.addComponent(okBtn); filterConfirmLabel = new FilterConfirmLabel(); this.addComponent(filterConfirmLabel); filterBtn = new ClosableFilterLabel(filterTitle, "", filterId, true); filterBtn.getCloseBtn().addClickListener(TextFieldFilter.this); okBtn.addClickListener(new Button.ClickListener() { @Override public void buttonClick(Button.ClickEvent event) { control.removeFilter(filterBtn.getCaption()); filterConfirmLabel.setVisible(false); if (textField.getValue() != null && !textField.getValue().trim().equalsIgnoreCase("")) { filterBtn.setValue(textField.getValue().trim().toUpperCase()); control.addFilter(filterBtn); filterConfirmLabel.setVisible(true); } } }); textField.addFocusListener(TextFieldFilter.this); this.setEnabled(true); this.focus(); }