List of usage examples for com.vaadin.ui GridLayout setMargin
@Override
public void setMargin(MarginInfo marginInfo)
From source file:org.vaadin.addons.sitekit.viewlet.administrator.user.UserFlowlet.java
License:Apache License
@Override public void initialize() { entityManager = getSite().getSiteContext().getObject(EntityManager.class); final GridLayout layout = new GridLayout(2, 3); layout.setSizeFull();//from w w w .j ava 2 s .c o m layout.setMargin(false); layout.setSpacing(true); layout.setRowExpandRatio(1, 1f); layout.setColumnExpandRatio(1, 1f); setViewContent(layout); editor = new ValidatingEditor(SiteFields.getFieldDescriptors(User.class)); editor.setCaption("User"); editor.addListener((ValidatingEditorStateListener) this); editor.setWidth("380px"); layout.addComponent(editor, 0, 1); final List<FieldDescriptor> childFieldDescriptors = SiteFields.getFieldDescriptors(GroupMember.class); final List<FilterDescriptor> childFilterDescriptors = new ArrayList<FilterDescriptor>(); childContainer = new EntityContainer<GroupMember>(entityManager, GroupMember.class, "groupMemberId", 1000, true, false, false); childContainer.getQueryView().getQueryDefinition().setDefaultSortState( new String[] { "user.firstName", "user.lastName" }, new boolean[] { true, true }); ContainerUtil.addContainerProperties(childContainer, childFieldDescriptors); final Table childTable = new FormattingTable(); childGrid = new Grid(childTable, childContainer); childGrid.setFields(childFieldDescriptors); childGrid.setFilters(childFilterDescriptors); childTable.setColumnCollapsed("created", true); layout.addComponent(childGrid, 1, 1); final HorizontalLayout editorButtonLayout = new HorizontalLayout(); editorButtonLayout.setSpacing(true); layout.addComponent(editorButtonLayout, 0, 2); saveButton = new Button("Save"); saveButton.setImmediate(true); editorButtonLayout.addComponent(saveButton); saveButton.addListener(new ClickListener() { /** Serial version UID. */ private static final long serialVersionUID = 1L; @Override public void buttonClick(final ClickEvent event) { editor.commit(); entityManager.getTransaction().begin(); try { if (user.getPasswordHash() != null) { final int hashSize = 64; if (user.getPasswordHash().length() != hashSize) { final byte[] passwordAndSaltBytes = (user.getEmailAddress() + ":" + user.getPasswordHash()).getBytes(Charset.forName("UTF-8")); try { final MessageDigest md = MessageDigest.getInstance("SHA-256"); final byte[] passwordAndSaltDigest = md.digest(passwordAndSaltBytes); user.setPasswordHash(StringUtil.toHexString(passwordAndSaltDigest)); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } } } // UserLogic.updateUser(user, // UserDao.getGroupMembers(entityManager, user)); user = entityManager.merge(user); entityManager.persist(user); entityManager.getTransaction().commit(); editor.setItem(new BeanItem<User>(user), false); //entityManager.detach(user); } catch (final Throwable t) { if (entityManager.getTransaction().isActive()) { entityManager.getTransaction().rollback(); } throw new RuntimeException("Failed to save entity: " + user, t); } } }); discardButton = new Button("Discard"); discardButton.setImmediate(true); editorButtonLayout.addComponent(discardButton); discardButton.addListener(new ClickListener() { /** Serial version UID. */ private static final long serialVersionUID = 1L; @Override public void buttonClick(final ClickEvent event) { editor.discard(); } }); childListButtonLayout = new HorizontalLayout(); childListButtonLayout.setSpacing(true); childListButtonLayout.setSizeUndefined(); layout.addComponent(childListButtonLayout, 1, 0); final Button addButton = getSite().getButton("add"); childListButtonLayout.addComponent(addButton); addButton.addClickListener(new ClickListener() { /** Serial version UID. */ private static final long serialVersionUID = 1L; @Override public void buttonClick(final ClickEvent event) { final GroupMember userElement = new GroupMember(); userElement.setUser(user); userElement.setCreated(new Date()); final UserGroupMemberFlowlet userGroupMemberFlowlet = getFlow() .forward(UserGroupMemberFlowlet.class); userGroupMemberFlowlet.edit(userElement, true); } }); final Button removeButton = getSite().getButton("remove"); childListButtonLayout.addComponent(removeButton); removeButton.addClickListener(new ClickListener() { /** Serial version UID. */ private static final long serialVersionUID = 1L; @Override public void buttonClick(final ClickEvent event) { childContainer.removeItem(childGrid.getSelectedItemId()); childContainer.commit(); } }); }
From source file:org.vaadin.addons.sitekit.viewlet.administrator.user.UserGroupMemberFlowlet.java
License:Apache License
@Override public void initialize() { entityManager = getSite().getSiteContext().getObject(EntityManager.class); final GridLayout gridLayout = new GridLayout(1, 2); gridLayout.setSizeFull();//from w ww.j av a 2s . c om gridLayout.setMargin(false); gridLayout.setSpacing(true); gridLayout.setRowExpandRatio(1, 1f); setViewContent(gridLayout); final List<FieldDescriptor> fieldDescriptors = new ArrayList<FieldDescriptor>( SiteFields.getFieldDescriptors(GroupMember.class)); for (final FieldDescriptor fieldDescriptor : fieldDescriptors) { if ("user".equals(fieldDescriptor.getId())) { fieldDescriptors.remove(fieldDescriptor); break; } } groupMemberEditor = new ValidatingEditor(fieldDescriptors); groupMemberEditor.setCaption("GroupMember"); groupMemberEditor.addListener(this); gridLayout.addComponent(groupMemberEditor, 0, 0); final HorizontalLayout buttonLayout = new HorizontalLayout(); buttonLayout.setSpacing(true); gridLayout.addComponent(buttonLayout, 0, 1); saveButton = new Button("Save"); saveButton.setImmediate(true); buttonLayout.addComponent(saveButton); saveButton.addListener(new ClickListener() { /** Serial version UID. */ private static final long serialVersionUID = 1L; @Override public void buttonClick(final ClickEvent event) { groupMemberEditor.commit(); entityManager.getTransaction().begin(); try { entity = entityManager.merge(entity); entityManager.persist(entity); entityManager.getTransaction().commit(); //entityManager.detach(entity); } catch (final Throwable t) { if (entityManager.getTransaction().isActive()) { entityManager.getTransaction().rollback(); } throw new RuntimeException("Failed to save entity: " + entity, t); } } }); discardButton = new Button("Discard"); discardButton.setImmediate(true); buttonLayout.addComponent(discardButton); discardButton.addListener(new ClickListener() { /** Serial version UID. */ private static final long serialVersionUID = 1L; @Override public void buttonClick(final ClickEvent event) { groupMemberEditor.discard(); } }); }
From source file:org.vaadin.addons.sitekit.viewlet.administrator.user.UsersFlowlet.java
License:Apache License
@Override public void initialize() { final List<FieldDescriptor> fieldDescriptors = SiteFields.getFieldDescriptors(User.class); final List<FilterDescriptor> filterDefinitions = new ArrayList<FilterDescriptor>(); final EntityManager entityManager = getSite().getSiteContext().getObject(EntityManager.class); container = new EntityContainer<User>(entityManager, true, false, false, User.class, 1000, new String[] { "lastName", "firstName" }, new boolean[] { true, true }, "userId"); ContainerUtil.addContainerProperties(container, fieldDescriptors); final GridLayout gridLayout = new GridLayout(1, 2); gridLayout.setSizeFull();// w w w . jav a 2 s .c om gridLayout.setMargin(false); gridLayout.setSpacing(true); gridLayout.setRowExpandRatio(1, 1f); setViewContent(gridLayout); final HorizontalLayout buttonLayout = new HorizontalLayout(); buttonLayout.setSpacing(true); buttonLayout.setSizeUndefined(); gridLayout.addComponent(buttonLayout, 0, 0); final Table table = new FormattingTable(); grid = new Grid(table, container); grid.setFields(fieldDescriptors); grid.setFilters(filterDefinitions); table.setColumnCollapsed("created", true); table.setColumnCollapsed("modified", true); table.setColumnCollapsed("passwordHash", true); table.setColumnCollapsed("openIdIdentifier", true); gridLayout.addComponent(grid, 0, 1); final Button addButton = getSite().getButton("add"); buttonLayout.addComponent(addButton); addButton.addClickListener(new ClickListener() { /** Serial version UID. */ private static final long serialVersionUID = 1L; @Override public void buttonClick(final ClickEvent event) { final User user = new User(); user.setCreated(new Date()); user.setModified(user.getCreated()); user.setOwner((Company) getSite().getSiteContext().getObject(Company.class)); final UserFlowlet userView = getFlow().getFlowlet(UserFlowlet.class); userView.edit(user, true); getFlow().forward(UserFlowlet.class); } }); final Button editButton = getSite().getButton("edit"); buttonLayout.addComponent(editButton); editButton.addClickListener(new ClickListener() { /** Serial version UID. */ private static final long serialVersionUID = 1L; @Override public void buttonClick(final ClickEvent event) { final User entity = container.getEntity(grid.getSelectedItemId()); final UserFlowlet userView = getFlow().getFlowlet(UserFlowlet.class); userView.edit(entity, false); getFlow().forward(UserFlowlet.class); } }); final Button removeButton = getSite().getButton("remove"); buttonLayout.addComponent(removeButton); removeButton.addClickListener(new ClickListener() { /** Serial version UID. */ private static final long serialVersionUID = 1L; @Override public void buttonClick(final ClickEvent event) { final User entity = container.getEntity(grid.getSelectedItemId()); final List<Group> groups = UserDao.getUserGroups(entityManager, (Company) getSite().getSiteContext().getObject(Company.class), entity); for (final Group group : groups) { UserDao.removeGroupMember(entityManager, group, entity); } final List<Privilege> privileges = UserDao.getUserPrivileges(entityManager, entity); for (final Privilege privilege : privileges) { UserDao.removeUserPrivilege(entityManager, entity, privilege.getKey(), privilege.getDataId()); } container.removeItem(grid.getSelectedItemId()); container.commit(); } }); final Button lockButton = getSite().getButton("lock"); lockButton.setImmediate(true); buttonLayout.addComponent(lockButton); lockButton.addClickListener(new ClickListener() { /** Serial version UID. */ private static final long serialVersionUID = 1L; @Override public void buttonClick(final ClickEvent event) { final User user = container.getEntity(grid.getSelectedItemId()); user.setLockedOut(true); UserDao.updateUser(entityManager, entityManager.merge(user)); container.refresh(); } }); final Button unlockButton = getSite().getButton("unlock"); unlockButton.setImmediate(true); buttonLayout.addComponent(unlockButton); unlockButton.addClickListener(new ClickListener() { /** Serial version UID. */ private static final long serialVersionUID = 1L; @Override public void buttonClick(final ClickEvent event) { final User user = container.getEntity(grid.getSelectedItemId()); user.setLockedOut(false); user.setFailedLoginCount(0); UserDao.updateUser(entityManager, entityManager.merge(user)); container.refresh(); } }); final Company company = getSite().getSiteContext().getObject(Company.class); container.removeDefaultFilters(); container.addDefaultFilter(new Compare.Equal("owner.companyId", company.getCompanyId())); grid.refresh(); }
From source file:org.vaadin.addons.sitekit.viewlet.user.AccountFlowlet.java
License:Apache License
@Override public void initialize() { final List<FieldDescriptor> fieldDefinitions = SiteFields.getFieldDescriptors(Customer.class); final List<FilterDescriptor> filterDefinitions = new ArrayList<FilterDescriptor>(); filterDefinitions.add(new FilterDescriptor("companyName", "companyName", "Company Name", new TextField(), 101, "=", String.class, "")); filterDefinitions.add(new FilterDescriptor("lastName", "lastName", "Last Name", new TextField(), 101, "=", String.class, "")); final EntityManager entityManager = getSite().getSiteContext().getObject(EntityManager.class); entityContainer = new EntityContainer<Customer>(entityManager, true, false, false, Customer.class, 1000, new String[] { "companyName", "lastName" }, new boolean[] { false, false }, "customerId"); for (final FieldDescriptor fieldDefinition : fieldDefinitions) { entityContainer.addContainerProperty(fieldDefinition.getId(), fieldDefinition.getValueType(), fieldDefinition.getDefaultValue(), fieldDefinition.isReadOnly(), fieldDefinition.isSortable()); }/*from www. ja v a2 s. c om*/ final GridLayout gridLayout = new GridLayout(1, 6); gridLayout.setRowExpandRatio(0, 0.0f); gridLayout.setRowExpandRatio(1, 0.0f); gridLayout.setRowExpandRatio(2, 0.0f); gridLayout.setRowExpandRatio(3, 0.0f); gridLayout.setRowExpandRatio(4, 0.0f); gridLayout.setRowExpandRatio(5, 1.0f); gridLayout.setSizeFull(); gridLayout.setMargin(false); gridLayout.setSpacing(true); gridLayout.setRowExpandRatio(4, 1f); setViewContent(gridLayout); final HorizontalLayout userAccountTitle = new HorizontalLayout(); userAccountTitle.setMargin(new MarginInfo(false, false, false, false)); userAccountTitle.setSpacing(true); final Embedded userAccountTitleIcon = new Embedded(null, getSite().getIcon("view-icon-user")); userAccountTitleIcon.setWidth(32, UNITS_PIXELS); userAccountTitleIcon.setHeight(32, UNITS_PIXELS); userAccountTitle.addComponent(userAccountTitleIcon); final Label userAccountTitleLabel = new Label("<h2>User Account</h2>", Label.CONTENT_XHTML); userAccountTitle.addComponent(userAccountTitleLabel); gridLayout.addComponent(userAccountTitle, 0, 0); final HorizontalLayout titleLayout = new HorizontalLayout(); titleLayout.setMargin(new MarginInfo(true, false, false, false)); titleLayout.setSpacing(true); final Embedded titleIcon = new Embedded(null, getSite().getIcon("view-icon-customer")); titleIcon.setWidth(32, UNITS_PIXELS); titleIcon.setHeight(32, UNITS_PIXELS); titleLayout.addComponent(titleIcon); final Label titleLabel = new Label("<h2>Customer Accounts</h2>", Label.CONTENT_XHTML); titleLayout.addComponent(titleLabel); gridLayout.addComponent(titleLayout, 0, 3); final Table table = new Table(); table.setPageLength(10); entityGrid = new Grid(table, entityContainer); entityGrid.setFields(fieldDefinitions); entityGrid.setFilters(filterDefinitions); //entityGrid.setFixedWhereCriteria("e.owner.companyId=:companyId"); table.setColumnCollapsed("created", true); table.setColumnCollapsed("modified", true); table.setColumnCollapsed("company", true); gridLayout.addComponent(entityGrid, 0, 5); final Button editUserButton = new Button("Edit User Account"); editUserButton.setIcon(getSite().getIcon("button-icon-edit")); gridLayout.addComponent(editUserButton, 0, 2); editUserButton.addListener(new ClickListener() { /** Serial version UID. */ private static final long serialVersionUID = 1L; @Override public void buttonClick(final ClickEvent event) { final User entity = ((SecurityProviderSessionImpl) getSite().getSecurityProvider()) .getUserFromSession(); final UserAccountFlowlet customerView = getFlow().getFlowlet(UserAccountFlowlet.class); customerView.edit(entity, false); getFlow().forward(UserAccountFlowlet.class); } }); final Company company = getSite().getSiteContext().getObject(Company.class); if (company.isOpenIdLogin()) { final Panel openIdPanel = new Panel(); openIdPanel.setStyleName(Reindeer.PANEL_LIGHT); openIdPanel.setCaption("Choose OpenID Provider:"); gridLayout.addComponent(openIdPanel, 0, 1); final HorizontalLayout openIdLayout = new HorizontalLayout(); openIdPanel.setContent(openIdLayout); openIdLayout.setMargin(new MarginInfo(false, false, true, false)); openIdLayout.setSpacing(true); final String returnViewName = "openidlink"; final Map<String, String> urlIconMap = OpenIdUtil.getOpenIdProviderUrlIconMap(); for (final String url : urlIconMap.keySet()) { openIdLayout.addComponent(OpenIdUtil.getLoginButton(url, urlIconMap.get(url), returnViewName)); } } final HorizontalLayout customerButtonsLayout = new HorizontalLayout(); gridLayout.addComponent(customerButtonsLayout, 0, 4); customerButtonsLayout.setMargin(false); customerButtonsLayout.setSpacing(true); final Button editCustomerDetailsButton = new Button("Edit Customer Details"); customerButtonsLayout.addComponent(editCustomerDetailsButton); editCustomerDetailsButton.setEnabled(false); editCustomerDetailsButton.setIcon(getSite().getIcon("button-icon-edit")); editCustomerDetailsButton.addListener(new ClickListener() { /** Serial version UID. */ private static final long serialVersionUID = 1L; @Override public void buttonClick(final ClickEvent event) { final Customer entity = entityContainer.getEntity(entityGrid.getSelectedItemId()); final CustomerFlowlet customerView = getFlow().forward(CustomerFlowlet.class); customerView.edit(entity, false); } }); final Button editCustomerMembersButton = new Button("Edit Customer Members"); customerButtonsLayout.addComponent(editCustomerMembersButton); editCustomerMembersButton.setEnabled(false); editCustomerMembersButton.setIcon(getSite().getIcon("button-icon-edit")); editCustomerMembersButton.addListener(new ClickListener() { /** Serial version UID. */ private static final long serialVersionUID = 1L; @Override public void buttonClick(final ClickEvent event) { final Customer entity = entityContainer.getEntity(entityGrid.getSelectedItemId()); final GroupFlowlet view = getFlow().forward(GroupFlowlet.class); view.edit(entity.getMemberGroup(), false); } }); final Button editCustomerAdminsButton = new Button("Edit Customer Admins"); customerButtonsLayout.addComponent(editCustomerAdminsButton); editCustomerAdminsButton.setEnabled(false); editCustomerAdminsButton.setIcon(getSite().getIcon("button-icon-edit")); editCustomerAdminsButton.addListener(new ClickListener() { /** Serial version UID. */ private static final long serialVersionUID = 1L; @Override public void buttonClick(final ClickEvent event) { final Customer entity = entityContainer.getEntity(entityGrid.getSelectedItemId()); final GroupFlowlet view = getFlow().forward(GroupFlowlet.class); view.edit(entity.getAdminGroup(), false); } }); table.addValueChangeListener(new Property.ValueChangeListener() { @Override public void valueChange(final Property.ValueChangeEvent event) { editCustomerDetailsButton.setEnabled(table.getValue() != null); editCustomerMembersButton.setEnabled(table.getValue() != null); editCustomerAdminsButton.setEnabled(table.getValue() != null); } }); }
From source file:org.vaadin.addons.sitekit.viewlet.user.UserAccountFlowlet.java
License:Apache License
@Override public void initialize() { entityManager = getSite().getSiteContext().getObject(EntityManager.class); final GridLayout layout = new GridLayout(1, 3); layout.setSizeFull();/*ww w . j a v a 2s . c o m*/ layout.setMargin(false); layout.setSpacing(true); layout.setRowExpandRatio(1, 1f); layout.setColumnExpandRatio(1, 1f); setViewContent(layout); editor = new ValidatingEditor(SiteFields.getFieldDescriptors(User.class)); editor.setCaption("User"); editor.addListener((ValidatingEditorStateListener) this); editor.setWidth("380px"); layout.addComponent(editor, 0, 1); final HorizontalLayout editorButtonLayout = new HorizontalLayout(); editorButtonLayout.setSpacing(true); layout.addComponent(editorButtonLayout, 0, 2); saveButton = new Button("Save"); saveButton.setImmediate(true); editorButtonLayout.addComponent(saveButton); saveButton.addListener(new ClickListener() { /** Serial version UID. */ private static final long serialVersionUID = 1L; @Override public void buttonClick(final ClickEvent event) { editor.commit(); entityManager.getTransaction().begin(); try { if (user.getPasswordHash() != null) { final int hashSize = 64; if (user.getPasswordHash().length() != hashSize) { final byte[] passwordAndSaltBytes = (user.getEmailAddress() + ":" + user.getPasswordHash()).getBytes(Charset.forName("UTF-8")); try { final MessageDigest md = MessageDigest.getInstance("SHA-256"); final byte[] passwordAndSaltDigest = md.digest(passwordAndSaltBytes); user.setPasswordHash(StringUtil.toHexString(passwordAndSaltDigest)); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } } } // UserLogic.updateUser(user, // UserDao.getGroupMembers(entityManager, user)); user = entityManager.merge(user); entityManager.persist(user); entityManager.getTransaction().commit(); editor.setItem(new BeanItem<User>(user), false); entityManager.detach(user); } catch (final Throwable t) { if (entityManager.getTransaction().isActive()) { entityManager.getTransaction().rollback(); } throw new RuntimeException("Failed to save entity: " + user, t); } } }); discardButton = new Button("Discard"); discardButton.setImmediate(true); editorButtonLayout.addComponent(discardButton); discardButton.addListener(new ClickListener() { /** Serial version UID. */ private static final long serialVersionUID = 1L; @Override public void buttonClick(final ClickEvent event) { editor.discard(); } }); }
From source file:probe.com.view.body.QuantCompareDataLayout.java
private VerticalLayout initProteinsDataCapture(int width) { VerticalLayout proteinsDataCapturingMainLayout = new VerticalLayout(); proteinsDataCapturingMainLayout.setSpacing(true); proteinsDataCapturingMainLayout.setMargin(true); String containerWidth = ((width * 2) + 10) + "px"; proteinsDataCapturingMainLayout.setWidth(containerWidth); proteinsDataCapturingMainLayout.setSpacing(true); Label titleLabel = new Label("2. Insert UniProt Proteins Accessions"); titleLabel.setContentMode(ContentMode.HTML); titleLabel.setStyleName("normalheader"); titleLabel.setHeight("20px"); proteinsDataCapturingMainLayout.addComponent(titleLabel); proteinsDataCapturingMainLayout.setComponentAlignment(titleLabel, Alignment.TOP_LEFT); GridLayout insertProteinsLayout = new GridLayout(3, 3); proteinsDataCapturingMainLayout.addComponent(insertProteinsLayout); insertProteinsLayout.setSpacing(true); insertProteinsLayout.setMargin(new MarginInfo(false, false, false, false)); insertProteinsLayout.setWidth(containerWidth); HorizontalLayout hlo1 = new HorizontalLayout(); hlo1.setWidth("100%"); hlo1.setMargin(new MarginInfo(false, true, false, false)); Label highLabel = new Label("<font color='#cc0000'> High</font>"); highLabel.setWidth("40px"); highLabel.setContentMode(ContentMode.HTML); hlo1.addComponent(highLabel);//from w ww. ja v a 2 s . c o m HorizontalLayout hlo2 = new HorizontalLayout(); hlo2.setWidth("100%"); hlo2.setMargin(new MarginInfo(false, true, false, false)); Label stableLabel = new Label("<font color='#018df4'> Stable</font>"); stableLabel.setWidth("50px"); stableLabel.setContentMode(ContentMode.HTML); hlo2.addComponent(stableLabel); HorizontalLayout hlo3 = new HorizontalLayout(); hlo3.setWidth("100%"); hlo3.setMargin(new MarginInfo(false, true, false, false)); Label lowLabel = new Label("<font color='#009900'> Low</font>"); lowLabel.setWidth("40px"); lowLabel.setContentMode(ContentMode.HTML); hlo3.addComponent(lowLabel); insertProteinsLayout.addComponent(hlo1, 0, 0); insertProteinsLayout.setComponentAlignment(hlo1, Alignment.MIDDLE_CENTER); insertProteinsLayout.addComponent(hlo2, 1, 0); insertProteinsLayout.setComponentAlignment(hlo2, Alignment.MIDDLE_CENTER); insertProteinsLayout.addComponent(hlo3, 2, 0); insertProteinsLayout.setComponentAlignment(hlo3, Alignment.MIDDLE_CENTER); highTextArea.setWidth("100%"); highTextArea.setHeight("200px"); insertProteinsLayout.addComponent(highTextArea, 0, 1); insertProteinsLayout.setComponentAlignment(highTextArea, Alignment.MIDDLE_CENTER); stableTextArea.setWidth("100%"); stableTextArea.setHeight("200px"); insertProteinsLayout.addComponent(stableTextArea, 1, 1); insertProteinsLayout.setComponentAlignment(stableTextArea, Alignment.MIDDLE_CENTER); lowTextArea.setWidth("100%"); lowTextArea.setHeight("200px"); insertProteinsLayout.addComponent(lowTextArea, 2, 1); insertProteinsLayout.setComponentAlignment(lowTextArea, Alignment.MIDDLE_CENTER); VerticalLayout clear1 = new VerticalLayout(); hlo1.addComponent(clear1); clear1.setDescription("Clear field"); clear1.setStyleName("clearfieldbtn"); clear1.setWidth("20px"); clear1.setHeight("20px"); // insertProteinsLayout.addComponent(clear1, 0, 2); hlo1.setComponentAlignment(clear1, Alignment.MIDDLE_RIGHT); clear1.addLayoutClickListener(new LayoutEvents.LayoutClickListener() { @Override public void layoutClick(LayoutEvents.LayoutClickEvent event) { highTextArea.clear(); } }); VerticalLayout clear2 = new VerticalLayout(); hlo2.addComponent(clear2); clear2.setDescription("Clear field"); clear2.setStyleName("clearfieldbtn"); clear2.setWidth("20px"); clear2.setHeight("20px"); clear2.addLayoutClickListener(new LayoutEvents.LayoutClickListener() { @Override public void layoutClick(LayoutEvents.LayoutClickEvent event) { stableTextArea.clear(); } }); hlo2.setComponentAlignment(clear2, Alignment.MIDDLE_RIGHT); VerticalLayout clear3 = new VerticalLayout(); hlo3.addComponent(clear3); clear3.setDescription("Clear field"); clear3.setStyleName("clearfieldbtn"); clear3.setWidth("20px"); clear3.setHeight("20px"); clear3.addLayoutClickListener(new LayoutEvents.LayoutClickListener() { @Override public void layoutClick(LayoutEvents.LayoutClickEvent event) { lowTextArea.clear(); } }); hlo3.setComponentAlignment(clear3, Alignment.MIDDLE_RIGHT); Label errorLabel = new Label(); proteinsDataCapturingMainLayout.addComponent(errorLabel); HorizontalLayout btnsLayout = new HorizontalLayout(); btnsLayout.setSpacing(true); btnsLayout.setMargin(new MarginInfo(true, false, false, false)); proteinsDataCapturingMainLayout.addComponent(btnsLayout); proteinsDataCapturingMainLayout.setComponentAlignment(btnsLayout, Alignment.MIDDLE_RIGHT); Button sampleBtn = new Button("Sample"); sampleBtn.setStyleName(Reindeer.BUTTON_SMALL); btnsLayout.addComponent(sampleBtn); sampleBtn.addClickListener(new Button.ClickListener() { @Override public void buttonClick(Button.ClickEvent event) { reset(); highTextArea.setValue(highAcc); lowTextArea.setValue(lowAcc); stableTextArea.setValue(stableAcc); diseaseGroupsListA.select("Group A"); diseaseGroupsListB.select("Group B"); compareBtn.focus(); } }); Button resetBtn = new Button("Reset"); resetBtn.setStyleName(Reindeer.BUTTON_SMALL); btnsLayout.addComponent(resetBtn); resetBtn.setId("resetBtn"); resetBtn.addClickListener(this); compareBtn = new Button("Compare"); compareBtn.setStyleName(Reindeer.BUTTON_SMALL); btnsLayout.addComponent(compareBtn); compareBtn.setId("compareBtn"); compareBtn.addClickListener(this); // highTextArea.setValue(highAcc); // lowTextArea.setValue(lowAcc); // stableTextArea.setValue(stableAcc); return proteinsDataCapturingMainLayout; }
From source file:probe.com.view.body.quantdatasetsoverview.diseasegroupsfilters.PopupRecombineDiseaseGroups.java
private void initPopupLayout() { int h = 0;//(default_DiseaseCat_DiseaseGroupMap.size() * 33) + 300; for (Map<String, String> m : default_DiseaseCat_DiseaseGroupMap.values()) { if (h < m.size()) { h = m.size();//from w ww . j a v a2 s.c om } } h = (h * 26) + 200; int w = 700; if (Page.getCurrent().getBrowserWindowHeight() - 280 < h) { h = Page.getCurrent().getBrowserWindowHeight() - 280; } if (Page.getCurrent().getBrowserWindowWidth() < w) { w = Page.getCurrent().getBrowserWindowWidth(); } popupWindow.setWidth(w + "px"); popupWindow.setHeight(h + "px"); popupBodyLayout.setWidth((w - 50) + "px"); Set<String> diseaseSet = Quant_Central_Manager.getDiseaseCategorySet(); diseaseTypeSelectionList.setDescription("Select disease category"); for (String disease : diseaseSet) { diseaseTypeSelectionList.addItem(disease); diseaseTypeSelectionList.setItemCaption(disease, (disease)); } HorizontalLayout diseaseCategorySelectLayout = new HorizontalLayout(); diseaseCategorySelectLayout.setWidthUndefined(); diseaseCategorySelectLayout.setHeight("50px"); diseaseCategorySelectLayout.setSpacing(true); diseaseCategorySelectLayout.setMargin(true); popupBodyLayout.addComponent(diseaseCategorySelectLayout); popupBodyLayout.setComponentAlignment(diseaseCategorySelectLayout, Alignment.TOP_LEFT); Label title = new Label("Disease Category"); title.setStyleName(Reindeer.LABEL_SMALL); diseaseCategorySelectLayout.addComponent(title); diseaseCategorySelectLayout.setComponentAlignment(title, Alignment.BOTTOM_CENTER); diseaseTypeSelectionList.setWidth("200px"); diseaseTypeSelectionList.setNullSelectionAllowed(false); diseaseTypeSelectionList.setValue("All"); diseaseTypeSelectionList.setImmediate(true); diseaseCategorySelectLayout.addComponent(diseaseTypeSelectionList); diseaseCategorySelectLayout.setComponentAlignment(diseaseTypeSelectionList, Alignment.TOP_LEFT); diseaseTypeSelectionList.setStyleName("diseaseselectionlist"); diseaseTypeSelectionList.addValueChangeListener(new Property.ValueChangeListener() { @Override public void valueChange(Property.ValueChangeEvent event) { boolean showAll = false; String value = event.getProperty().getValue().toString(); if (value.equalsIgnoreCase("All")) { showAll = true; } for (String dName : diseaseGroupsGridLayoutMap.keySet()) { if (dName.equalsIgnoreCase(value) || showAll) { diseaseGroupsGridLayoutMap.get(dName).setVisible(true); } else { diseaseGroupsGridLayoutMap.get(dName).setVisible(false); } } } }); VerticalLayout diseaseGroupsNamesContainer = new VerticalLayout(); diseaseGroupsNamesContainer.setWidth("100%"); diseaseGroupsNamesContainer.setHeightUndefined(); popupBodyLayout.addComponent(diseaseGroupsNamesContainer); diseaseGroupsNamesContainer.setStyleName(Reindeer.LAYOUT_WHITE); GridLayout diseaseNamesHeader = new GridLayout(2, 1); diseaseNamesHeader.setWidth("100%"); diseaseNamesHeader.setHeightUndefined(); diseaseNamesHeader.setSpacing(true); diseaseNamesHeader.setMargin(new MarginInfo(true, false, true, false)); diseaseGroupsNamesContainer.addComponent(diseaseNamesHeader); Label col1Label = new Label("Group Name"); diseaseNamesHeader.addComponent(col1Label, 0, 0); col1Label.setStyleName(Reindeer.LABEL_SMALL); Label col2Label = new Label("Suggested Name"); diseaseNamesHeader.addComponent(col2Label, 1, 0); col2Label.setStyleName(Reindeer.LABEL_SMALL); Panel diseaseGroupsNamesFrame = new Panel(); diseaseGroupsNamesFrame.setWidth("100%"); diseaseGroupsNamesFrame.setHeight((h - 200) + "px"); diseaseGroupsNamesContainer.addComponent(diseaseGroupsNamesFrame); diseaseGroupsNamesFrame.setStyleName(Reindeer.PANEL_LIGHT); VerticalLayout diseaseNamesUpdateContainerLayout = new VerticalLayout(); for (String diseaseCategory : diseaseSet) { if (diseaseCategory.equalsIgnoreCase("All")) { continue; } HorizontalLayout diseaseNamesUpdateContainer = initDiseaseNamesUpdateContainer(diseaseCategory); diseaseNamesUpdateContainerLayout.addComponent(diseaseNamesUpdateContainer); diseaseGroupsGridLayoutMap.put(diseaseCategory, diseaseNamesUpdateContainer); } diseaseGroupsNamesFrame.setContent(diseaseNamesUpdateContainerLayout); HorizontalLayout btnLayout = new HorizontalLayout(); btnLayout.setMargin(true); btnLayout.setSpacing(true); Button resetFiltersBtn = new Button("Reset"); resetFiltersBtn.setPrimaryStyleName("resetbtn"); btnLayout.addComponent(resetFiltersBtn); resetFiltersBtn.setWidth("50px"); resetFiltersBtn.setHeight("24px"); resetFiltersBtn.setDescription("Reset group names to default"); resetFiltersBtn.addClickListener(new Button.ClickListener() { @Override public void buttonClick(Button.ClickEvent event) { resetToDefault(); } }); Button resetToOriginalBtn = new Button("Publications Names"); resetToOriginalBtn.setPrimaryStyleName("resetbtn"); btnLayout.addComponent(resetToOriginalBtn); resetToOriginalBtn.setWidth("150px"); resetToOriginalBtn.setHeight("24px"); resetToOriginalBtn.setDescription("Reset group names to original publication names"); resetToOriginalBtn.addClickListener(new Button.ClickListener() { @Override public void buttonClick(Button.ClickEvent event) { resetToPublicationsNames(); } }); Button applyFilters = new Button("Update"); applyFilters.setDescription("Update disease groups with the selected names"); applyFilters.setPrimaryStyleName("resetbtn"); applyFilters.setWidth("50px"); applyFilters.setHeight("24px"); btnLayout.addComponent(applyFilters); applyFilters.addClickListener(new Button.ClickListener() { @Override public void buttonClick(Button.ClickEvent event) { updateGroups(); } }); popupBodyLayout.addComponent(btnLayout); popupBodyLayout.setComponentAlignment(btnLayout, Alignment.MIDDLE_RIGHT); resetToDefault(); }
From source file:probe.com.view.body.quantdatasetsoverview.diseasegroupsfilters.PopupRecombineDiseaseGroups.java
private HorizontalLayout initDiseaseNamesUpdateContainer(String diseaseCategory) { GridLayout diseaseNamesUpdateContainer = new GridLayout(2, (default_DiseaseCat_DiseaseGroupMap.get(diseaseCategory).size() * 2)); diseaseNamesUpdateContainer.setWidth("100%"); diseaseNamesUpdateContainer.setHeightUndefined(); diseaseNamesUpdateContainer.setSpacing(false); diseaseNamesUpdateContainer.setMargin(new MarginInfo(false, false, false, false)); int widthCalc = 0; int row = 0;/*from w ww .j a va 2 s .c om*/ int col = 0; Map<String, ComboBox> diseaseGroupNameToListMap = new LinkedHashMap<String, ComboBox>(); for (String diseaseGroupName : default_DiseaseCat_DiseaseGroupMap.get(diseaseCategory).keySet()) { // if(!diseaseGroupName.contains(diseaseCategory)) // continue; diseaseNamesUpdateContainer.addComponent(generateLabel(diseaseGroupName, diseaseCategory), col, row); ComboBox list = generateLabelList(diseaseCategory); diseaseNamesUpdateContainer.addComponent(list, col + 1, row); diseaseGroupNameToListMap.put(diseaseGroupName, list); col = 0; row++; VerticalLayout spacer1 = new VerticalLayout(); spacer1.setHeight("2px"); spacer1.setWidth("300px"); spacer1.setStyleName(Reindeer.LAYOUT_WHITE); diseaseNamesUpdateContainer.addComponent(spacer1, col, row); VerticalLayout spacer2 = new VerticalLayout(); spacer2.setHeight("2px"); spacer2.setWidth("300px"); spacer2.setStyleName(Reindeer.LAYOUT_WHITE);//"lightgraylayout"); diseaseNamesUpdateContainer.addComponent(spacer2, col + 1, row); col = 0; row++; widthCalc += 26; } diseaseGroupsSelectionListMap.put(diseaseCategory, diseaseGroupNameToListMap); // widthCalc-=26; VerticalLayout diseaseLabelContainer = new VerticalLayout(); Label label = new Label("<center><font color='#ffffff'>" + diseaseCategory + "</font></center>"); label.setContentMode(ContentMode.HTML); diseaseLabelContainer.setHeight(widthCalc + "px"); diseaseLabelContainer.setWidth("20px"); VerticalLayout rotateContainer = new VerticalLayout(); rotateContainer.setWidth(widthCalc + "px"); rotateContainer.setHeight("20px"); diseaseLabelContainer.addComponent(rotateContainer); rotateContainer.setStyleName( "row_" + diseaseStyleMap.get(diseaseCategory.replace(" ", "_").replace("'", "-") + ("_Disease"))); rotateContainer.addComponent(label); HorizontalLayout layout = new HorizontalLayout(); layout.setSpacing(true); layout.addComponent(diseaseLabelContainer); layout.addComponent(diseaseNamesUpdateContainer); return layout; }
From source file:probe.com.view.body.quantdatasetsoverview.quantproteinstabsheet.peptidescontainer.popupcomponents.ProteinsInformationOverviewLayout.java
private GridLayout initProteinsForm(int width) { GridLayout proteinsFormLayout = new GridLayout(4, 5); proteinsFormLayout.setMargin(new MarginInfo(false, true, false, false)); proteinsFormLayout.setWidth(width + "px"); proteinsFormLayout.setHeightUndefined(); accsession = new InformationField("Accession"); proteinsFormLayout.addComponent(accsession, 0, 0); name = new InformationField("Protein Name"); proteinsFormLayout.addComponent(name, 1, 0); quantPeptidesNumber = new InformationField("#Quant Peptides"); proteinsFormLayout.addComponent(quantPeptidesNumber, 2, 0); idPeptidesNumber = new InformationField("#Identified Peptides"); proteinsFormLayout.addComponent(idPeptidesNumber, 3, 0); foldChange = new InformationField("Fold Change"); proteinsFormLayout.addComponent(foldChange, 0, 1); pValue = new InformationField("p-value"); proteinsFormLayout.addComponent(pValue, 1, 1); pvalueSignificanceThreshold = new InformationField("p-value Threshold"); proteinsFormLayout.addComponent(pvalueSignificanceThreshold, 2, 1); pValueComm = new InformationField("Statistical Comments"); proteinsFormLayout.addComponent(pValueComm, 3, 1); roc = new InformationField("ROC AUC"); proteinsFormLayout.addComponent(roc, 0, 2); quantBasisComment = new InformationField("Quantification Basis Comment"); proteinsFormLayout.addComponent(quantBasisComment, 1, 2); additionalComments = new InformationField("Additional Comments"); proteinsFormLayout.addComponent(additionalComments, 2, 2); return proteinsFormLayout; }
From source file:probe.com.view.body.quantdatasetsoverview.quantproteinstabsheet.studies.PeptidesComparisonsSequenceLayout.java
/** * * @param cp/*from ww w . ja va 2 s . c o m*/ * @param width * @param Quant_Central_Manager */ public PeptidesComparisonsSequenceLayout(QuantCentralManager Quant_Central_Manager, final DiseaseGroupsComparisonsProteinLayout cp, int width) { this.studiesMap = new LinkedHashMap<String, StudyInfoData>(); this.setColumns(4); this.setRows(3); this.setWidthUndefined(); this.setSpacing(true); this.setMargin(new MarginInfo(true, false, false, false)); comparisonTitle = new Label(); comparisonTitle.setContentMode(ContentMode.HTML); comparisonTitle.setStyleName("custChartLabelHeader"); comparisonTitle.setWidth((width - 55) + "px"); this.addComponent(comparisonTitle, 1, 0); this.setComponentAlignment(comparisonTitle, Alignment.TOP_LEFT); closeBtn = new VerticalLayout(); closeBtn.setWidth("20px"); closeBtn.setHeight("20px"); closeBtn.setStyleName("closebtn"); this.addComponent(closeBtn, 2, 0); this.setComponentAlignment(closeBtn, Alignment.TOP_RIGHT); //end of toplayout //init comparison study layout GridLayout proteinSequenceComparisonsContainer = new GridLayout(2, cp.getComparison().getDatasetIndexes().length); proteinSequenceComparisonsContainer.setWidthUndefined(); proteinSequenceComparisonsContainer.setHeightUndefined(); proteinSequenceComparisonsContainer.setStyleName(Reindeer.LAYOUT_WHITE); proteinSequenceComparisonsContainer.setSpacing(true); proteinSequenceComparisonsContainer.setMargin(new MarginInfo(true, false, false, false)); this.addComponent(proteinSequenceComparisonsContainer, 1, 1); coverageWidth = (width - 100 - 180); Map<Integer, Set<QuantPeptide>> dsQuantPepMap = new HashMap<Integer, Set<QuantPeptide>>(); for (QuantPeptide quantPep : cp.getQuantPeptidesList()) { if (!dsQuantPepMap.containsKey(quantPep.getDsKey())) { Set<QuantPeptide> subList = new HashSet<QuantPeptide>(); dsQuantPepMap.put(quantPep.getDsKey(), subList); } Set<QuantPeptide> subList = dsQuantPepMap.get(quantPep.getDsKey()); subList.add(quantPep); dsQuantPepMap.put(quantPep.getDsKey(), subList); } int numb = 0; int panelWidth = Page.getCurrent().getBrowserWindowWidth() - 100; String groupCompTitle = cp.getComparison().getComparisonHeader(); String updatedHeader = groupCompTitle.split(" / ")[0].split("\n")[0] + " / " + groupCompTitle.split(" / ")[1].split("\n")[0];//+ " ( " + groupCompTitle.split(" / ")[1].split("\n")[1] + " )"; ; final StudyInformationPopupComponent studyInformationPopupPanel = new StudyInformationPopupComponent( panelWidth, cp.getProtName(), cp.getUrl(), cp.getComparison().getComparisonFullName()); studyInformationPopupPanel.setVisible(false); LayoutEvents.LayoutClickListener studyListener = new LayoutEvents.LayoutClickListener() { @Override public void layoutClick(LayoutEvents.LayoutClickEvent event) { Integer dsId; if (event.getComponent() instanceof AbsoluteLayout) { dsId = (Integer) ((AbsoluteLayout) event.getComponent()).getData(); } else { dsId = (Integer) ((VerticalLayout) event.getComponent()).getData(); } studyInformationPopupPanel.updateContent(dsToStudyLayoutMap.get(dsId)); } }; TreeSet<QuantProtein> orderSet = new TreeSet<QuantProtein>(cp.getDsQuantProteinsMap().values()); for (QuantProtein quantProtein : orderSet) { StudyInfoData exportData = new StudyInfoData(); exportData.setCoverageWidth(coverageWidth); Label studyTitle = new Label();//"Study " + (numb + 1)); studyTitle.setStyleName("peptideslayoutlabel"); studyTitle.setHeightUndefined(); studyTitle.setWidth("200px"); Label iconTitle = new Label("#Patients (" + (quantProtein.getPatientsGroupIINumber() + quantProtein.getPatientsGroupINumber()) + ")"); exportData.setSubTitle(iconTitle.getValue()); iconTitle.setStyleName("peptideslayoutlabel"); iconTitle.setHeightUndefined(); if (quantProtein.getStringPValue().equalsIgnoreCase("Not Significant") || quantProtein.getStringFCValue().equalsIgnoreCase("Not regulated")) { iconTitle.setStyleName("notregicon"); exportData.setTrend(0); } else if (quantProtein.getStringFCValue().equalsIgnoreCase("Decreased")) { iconTitle.setStyleName("downarricon"); exportData.setTrend(-1); } else { exportData.setTrend(1); iconTitle.setStyleName("uparricon"); } iconTitle.setDescription(cp.getProteinAccssionNumber() + " : #Patients (" + (quantProtein.getPatientsGroupIINumber() + quantProtein.getPatientsGroupINumber()) + ") " + quantProtein.getStringFCValue() + " " + quantProtein.getStringPValue() + ""); VerticalLayout labelContainer = new VerticalLayout(); labelContainer.addComponent(studyTitle); labelContainer.addComponent(iconTitle); proteinSequenceComparisonsContainer.addComponent(labelContainer, 0, numb); proteinSequenceComparisonsContainer.setComponentAlignment(labelContainer, Alignment.TOP_CENTER); Map<Integer, ComparisonDetailsBean> patientGroupsNumToDsIdMap = new HashMap<Integer, ComparisonDetailsBean>(); ComparisonDetailsBean pGr = new ComparisonDetailsBean(); patientGroupsNumToDsIdMap .put((quantProtein.getPatientsGroupIINumber() + quantProtein.getPatientsGroupINumber()), pGr); QuantDatasetObject ds; ds = Quant_Central_Manager.getFullQuantDatasetMap().get(quantProtein.getDsKey()); StudyPopupLayout study = new StudyPopupLayout(panelWidth, quantProtein, ds, cp.getProteinAccssionNumber(), cp.getUrl(), cp.getProtName(), Quant_Central_Manager.getDiseaseHashedColorMap()); Set<QuantDatasetObject> qdsSet = new HashSet<QuantDatasetObject>(); qdsSet.add(ds); study.setInformationData(qdsSet, cp); dsToStudyLayoutMap.put(ds.getDsKey(), study); labelContainer.addLayoutClickListener(studyListener); labelContainer.setData(ds.getDsKey()); studyTitle.setValue("[" + (numb + 1) + "] " + ds.getAuthor()); exportData.setTitle(ds.getAuthor()); if (dsQuantPepMap.get(quantProtein.getDsKey()) == null) { Label noPeptidesInfoLabel = new Label("No Peptide Information Available "); noPeptidesInfoLabel.setHeightUndefined(); noPeptidesInfoLabel.setStyleName("peptideslayoutlabel"); VerticalLayout labelValueContainer = new VerticalLayout(); labelValueContainer.addComponent(noPeptidesInfoLabel); labelValueContainer.addLayoutClickListener(studyListener); labelValueContainer.setData(ds.getDsKey()); proteinSequenceComparisonsContainer.addComponent(labelValueContainer, 1, numb); proteinSequenceComparisonsContainer.setComponentAlignment(labelValueContainer, Alignment.TOP_CENTER); numb++; studiesMap.put((numb + 1) + ds.getAuthor(), exportData); continue; } String key = "_-_" + quantProtein.getDsKey() + "_-_" + cp.getProteinAccssionNumber() + "_-_"; PeptidesInformationOverviewLayout peptideInfoLayout = new PeptidesInformationOverviewLayout( cp.getSequence(), dsQuantPepMap.get(quantProtein.getDsKey()), coverageWidth, true, studyListener, ds.getDsKey()); exportData.setPeptidesInfoList(peptideInfoLayout.getStackedPeptides()); exportData.setLevelsNumber(peptideInfoLayout.getLevel()); hasPTM = peptideInfoLayout.isHasPTM(); peptidesInfoLayoutDSIndexMap.put(key, peptideInfoLayout); proteinSequenceComparisonsContainer.addComponent(peptideInfoLayout, 1, numb); numb++; studiesMap.put((numb + 1) + ds.getAuthor(), exportData); } String rgbColor = Quant_Central_Manager .getDiseaseHashedColor(groupCompTitle.split(" / ")[1].split("\n")[1]); comparisonTitle.setValue("<font color='" + rgbColor + "' style='font-weight: bold;'>" + updatedHeader + " (#Datasets " + numb + "/" + cp.getComparison().getDatasetIndexes().length + ")</font>"); comparisonTitle.setDescription(cp.getComparison().getComparisonFullName()); VerticalLayout bottomSpacer = new VerticalLayout(); bottomSpacer.setWidth((width - 100) + "px"); bottomSpacer.setHeight("10px"); bottomSpacer.setStyleName("dottedline"); this.addComponent(bottomSpacer, 1, 2); }