Example usage for com.google.gson JsonObject getAsJsonPrimitive

List of usage examples for com.google.gson JsonObject getAsJsonPrimitive

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Introduction

In this page you can find the example usage for com.google.gson JsonObject getAsJsonPrimitive.

Prototype

public JsonPrimitive getAsJsonPrimitive(String memberName)

Source Link

Document

Convenience method to get the specified member as a JsonPrimitive element.

Usage

From source file:org.broad.igv.ga4gh.Ga4ghAPIHelper.java

License:Open Source License

private static String getErrorMessage(HttpURLConnection connection) throws IOException {
    BufferedReader br = new BufferedReader(
            new InputStreamReader(new GZIPInputStream(connection.getErrorStream())));
    StringBuffer sb = new StringBuffer();
    String str = br.readLine();/*from  w  ww.ja v  a2s  . com*/
    while (str != null) {
        sb.append(str);
        str = br.readLine();
    }
    br.close();

    JsonParser parser = new JsonParser();
    JsonObject obj = parser.parse(sb.toString()).getAsJsonObject();

    JsonObject errorObject = obj.getAsJsonObject("error");
    if (errorObject != null) {
        JsonPrimitive msg = errorObject.getAsJsonPrimitive("message");
        if (msg != null)
            return msg.getAsString();
    }

    return sb.toString();
}

From source file:org.broad.igv.ga4gh.OAuthUtils.java

License:Open Source License

private void fetchTokens(String redirect) throws IOException {

    // properties moved to early init dwm08
    //if (clientId == null) fetchOauthProperties();

    URL url = new URL(tokenURI);

    Map<String, String> params = new HashMap<String, String>();
    params.put("code", authorizationCode);
    params.put("client_id", clientId);
    params.put("client_secret", clientSecret);
    params.put("redirect_uri", redirect);
    params.put("grant_type", "authorization_code");

    // set the resource if it necessary for the auth provider dwm08
    if (appIdURI != null) {
        params.put("resource", appIdURI);
    }/*  w w w .j  a v a2s .c  o m*/

    String response = HttpUtils.getInstance().doPost(url, params);
    JsonParser parser = new JsonParser();
    JsonObject obj = parser.parse(response).getAsJsonObject();

    accessToken = obj.getAsJsonPrimitive("access_token").getAsString();
    refreshToken = obj.getAsJsonPrimitive("refresh_token").getAsString();
    expirationTime = System.currentTimeMillis() + (obj.getAsJsonPrimitive("expires_in").getAsInt() * 1000);

    // Try to store in java.util.prefs
    saveRefreshToken();
}

From source file:org.broad.igv.ga4gh.OAuthUtils.java

License:Open Source License

/**
 * Fetch a new access token from a refresh token.
 *
 * @throws IOException// w  ww  .  java 2  s .c  o m
 */
private void refreshAccessToken() throws IOException {

    // properties moved to early init dwm08
    //if (clientId == null) fetchOauthProperties();

    URL url = new URL(tokenURI);

    Map<String, String> params = new HashMap<String, String>();
    params.put("refresh_token", refreshToken);
    params.put("client_id", clientId);
    params.put("client_secret", clientSecret);
    params.put("grant_type", "refresh_token");

    // set the resource if it necessary for the auth provider dwm08
    if (appIdURI != null) {
        params.put("resource", appIdURI);
    }

    String response = HttpUtils.getInstance().doPost(url, params);
    JsonParser parser = new JsonParser();
    JsonObject obj = parser.parse(response).getAsJsonObject();

    JsonPrimitive atprim = obj.getAsJsonPrimitive("access_token");
    if (atprim != null) {
        accessToken = obj.getAsJsonPrimitive("access_token").getAsString();
        expirationTime = System.currentTimeMillis() + (obj.getAsJsonPrimitive("expires_in").getAsInt() * 1000);
        fetchUserProfile();
    } else {
        // Refresh token has failed, reauthorize from scratch
        reauthorize();
    }

}

From source file:org.broad.igv.google.Ga4ghAlignmentReader.java

License:Open Source License

private void loadMetadata() throws IOException {

    String authKey = provider.apiKey;
    String baseURL = provider.baseURL;

    URL url = HttpUtils//from ww w  .  j a v a  2 s. co  m
            .createURL(baseURL + "/readgroupsets/" + readsetId + (authKey == null ? "" : "?key=" + authKey)); // TODO -- field selection?

    Map<String, String> headers = new HashMap<String, String>();
    String token = OAuthUtils.getInstance().getAccessToken();
    if (token != null) {
        headers.put("Authorization", "Bearer " + token);
    }

    String result = HttpUtils.getInstance().getContentsAsString(url, headers);
    JsonParser parser = new JsonParser();
    JsonObject root = parser.parse(result).getAsJsonObject();

    if (root.has("referenceSetId")) {
        String referenceSetId = root.getAsJsonPrimitive("referenceSetId").getAsString();

        List<JsonObject> refererences = Ga4ghAPIHelper.searchReferences(provider, referenceSetId, 1000);

        sequenceNames = new ArrayList();

        for (JsonObject refObject : refererences) {
            sequenceNames.add(refObject.getAsJsonPrimitive("name").getAsString());
        }
    }
}

From source file:org.broad.igv.google.OAuthUtils.java

License:Open Source License

private void fetchTokens(String redirect) throws IOException {

    // properties moved to early init dwm08
    //if (clientId == null) fetchOauthProperties();

    URL url = HttpUtils.createURL(tokenURI);

    Map<String, String> params = new HashMap<String, String>();
    params.put("code", authorizationCode);
    params.put("client_id", clientId);
    params.put("client_secret", clientSecret);
    params.put("redirect_uri", redirect);
    params.put("grant_type", "authorization_code");

    // set the resource if it necessary for the auth provider dwm08
    if (appIdURI != null) {
        params.put("resource", appIdURI);
    }/*from w ww .j av  a2s  .co m*/

    String response = HttpUtils.getInstance().doPost(url, params);
    JsonParser parser = new JsonParser();
    JsonObject obj = parser.parse(response).getAsJsonObject();

    accessToken = obj.getAsJsonPrimitive("access_token").getAsString();
    refreshToken = obj.getAsJsonPrimitive("refresh_token").getAsString();
    expirationTime = System.currentTimeMillis() + (obj.getAsJsonPrimitive("expires_in").getAsInt() * 1000);

    // Try to store in java.util.prefs
    saveRefreshToken();
}

From source file:org.broad.igv.google.OAuthUtils.java

License:Open Source License

/**
 * Fetch a new access token from a refresh token.
 *
 * @throws IOException//from   w ww.java  2s.c o m
 */
private void refreshAccessToken() throws IOException {

    // properties moved to early init dwm08
    //if (clientId == null) fetchOauthProperties();

    URL url = HttpUtils.createURL(tokenURI);

    Map<String, String> params = new HashMap<String, String>();
    params.put("refresh_token", refreshToken);
    params.put("client_id", clientId);
    params.put("client_secret", clientSecret);
    params.put("grant_type", "refresh_token");

    // set the resource if it necessary for the auth provider dwm08
    if (appIdURI != null) {
        params.put("resource", appIdURI);
    }

    String response = HttpUtils.getInstance().doPost(url, params);
    JsonParser parser = new JsonParser();
    JsonObject obj = parser.parse(response).getAsJsonObject();

    JsonPrimitive atprim = obj.getAsJsonPrimitive("access_token");
    if (atprim != null) {
        accessToken = obj.getAsJsonPrimitive("access_token").getAsString();
        expirationTime = System.currentTimeMillis() + (obj.getAsJsonPrimitive("expires_in").getAsInt() * 1000);
        fetchUserProfile();
    } else {
        // Refresh token has failed, reauthorize from scratch
        reauthorize();
    }

}

From source file:org.crsh.web.GistsServlet.java

License:Open Source License

@Override
protected void doPost(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException {

    ///*from   w w w .j a v  a 2  s  . com*/
    String pathInfo = req.getPathInfo();
    if (pathInfo != null && pathInfo.length() > 0) {
        resp.sendError(HttpServletResponse.SC_BAD_REQUEST, "No gist id must be provided");
    } else {
        // Build body
        JsonObject body = new JsonObject();
        body.addProperty("description", "A set of shell JVM commands for CRaSH http://try.crashub.org");
        body.addProperty("public", true);
        JsonObject files = new JsonObject();
        for (Map.Entry<String, String[]> parameter : req.getParameterMap().entrySet()) {
            String script = parameter.getValue()[0];
            JsonObject file = new JsonObject();
            file.addProperty("content", script);
            files.add(parameter.getKey() + ".groovy", file);
        }
        body.add("files", files);

        // Perform request
        Client c = Client.create();
        WebResource r = c.resource("https://api.github.com/gists");
        ClientResponse response = r.accept(MediaType.APPLICATION_JSON_TYPE)
                .type(MediaType.APPLICATION_JSON_TYPE).post(ClientResponse.class, body.toString());
        String entity = response.getEntity(String.class);

        //
        int status = response.getStatus();
        if (status >= 200 && status <= 299) {
            JsonObject object = (JsonObject) new JsonParser().parse(entity);
            String id = object.getAsJsonPrimitive("id").getAsString();
            log.log(Level.INFO, req.getRemoteHost() + " created gist " + id);
            resp.sendRedirect(req.getContextPath() + "/gists/" + id);
        } else {
            log.log(Level.SEVERE,
                    req.getRemoteHost() + " could not create gist status =" + status + " entity = " + entity);
            resp.sendError(HttpServletResponse.SC_INTERNAL_SERVER_ERROR,
                    "Could not create gist status =" + status + " entity = " + entity);
        }
    }
}

From source file:org.cvasilak.jboss.mobile.admin.fragments.DataSourceMetricsViewFragment.java

License:Open Source License

public void refresh() {
    progress = ProgressDialog.show(getSherlockActivity(), "", getString(R.string.queryingServer));

    application.getOperationsManager().fetchDataSourceMetrics(this.dsName, this.dsType, new Callback() {
        @Override/*from w w w . java2  s  .  com*/
        public void onSuccess(JsonElement reply) {
            progress.dismiss();

            JsonObject jsonObj = reply.getAsJsonObject();

            Map<String, String> info = new HashMap<String, String>();

            JsonObject jsonPool = jsonObj.getAsJsonObject("step-1").getAsJsonObject("result");
            int availCount = jsonPool.getAsJsonPrimitive("AvailableCount").getAsInt();
            int activeCount = jsonPool.getAsJsonPrimitive("ActiveCount").getAsInt();
            int maxUsedCount = jsonPool.getAsJsonPrimitive("MaxUsedCount").getAsInt();

            float usedPerc = (availCount != 0 ? ((float) activeCount / availCount) * 100 : 0);

            info.put("AvailableCount", String.format("%d", availCount));
            info.put("ActiveCount", String.format("%d (%.0f%%)", activeCount, usedPerc));
            info.put("MaxUsedCount", String.format("%d", maxUsedCount));

            for (Metric metric : poolMetrics) {
                metric.setValue(info.get(metric.getKey()));
            }

            JsonObject jsonJDBC = jsonObj.getAsJsonObject("step-2").getAsJsonObject("result");
            int curSize = jsonJDBC.getAsJsonPrimitive("PreparedStatementCacheCurrentSize").getAsInt();
            int hitCount = jsonJDBC.getAsJsonPrimitive("PreparedStatementCacheHitCount").getAsInt();
            float hitPerc = (curSize != 0 ? ((float) hitCount / curSize) * 100 : 0);

            int misUsed = jsonJDBC.getAsJsonPrimitive("PreparedStatementCacheMissCount").getAsInt();
            float misPerc = (curSize != 0 ? ((float) misUsed / curSize) * 100 : 0);

            info.put("PreparedStatementCacheCurrentSize", String.format("%d", curSize));
            info.put("PreparedStatementCacheHitCount", String.format("%d (%.0f%%)", hitCount, hitPerc));
            info.put("PreparedStatementCacheMissCount", String.format("%d (%.0f%%)", misUsed, misPerc));

            for (Metric metric : prepStatementMetrics) {
                metric.setValue(info.get(metric.getKey()));
            }

            // refresh table
            ((MergeAdapter) getListAdapter()).notifyDataSetChanged();
        }

        @Override
        public void onFailure(Exception e) {
            progress.dismiss();

            AlertDialog.Builder alertDialog = new AlertDialog.Builder(getActivity());

            alertDialog.setTitle(R.string.dialog_error_title).setMessage(e.getMessage())
                    .setPositiveButton(R.string.dialog_button_Bummer, null).setCancelable(false)
                    .setIcon(android.R.drawable.ic_dialog_alert).show();

        }
    });
}

From source file:org.cvasilak.jboss.mobile.admin.fragments.JMSQueueMetricsViewFragment.java

License:Open Source License

public void refresh() {
    progress = ProgressDialog.show(getSherlockActivity(), "", getString(R.string.queryingServer));

    application.getOperationsManager().fetchJMSQueueMetrics(queueName, JMSType.QUEUE, new Callback() {
        @Override//from   w  w w  . j av a2  s .  c  o m
        public void onSuccess(JsonElement reply) {
            progress.dismiss();

            JsonObject jsonObj = reply.getAsJsonObject();

            Map<String, String> info = new HashMap<String, String>();

            int msgCount = jsonObj.getAsJsonPrimitive("message-count").getAsInt();
            int delivCount = jsonObj.getAsJsonPrimitive("delivering-count").getAsInt();
            float delivPerc = (msgCount != 0 ? ((float) delivCount / msgCount) * 100 : 0);
            int msgAdded = jsonObj.getAsJsonPrimitive("messages-added").getAsInt();

            info.put("message-count", String.format("%d", msgCount));
            info.put("delivering-count", String.format("%d (%.0f%%)", delivCount, delivPerc));
            for (Metric metric : inFlightMetrics) {
                metric.setValue(info.get(metric.getKey()));
            }

            int schCount = jsonObj.getAsJsonPrimitive("scheduled-count").getAsInt();
            info.put("messages-added", String.format("%d", msgAdded));
            info.put("scheduled-count", String.format("%d", schCount));

            for (Metric metric : msgProcessedMetrics) {
                metric.setValue(info.get(metric.getKey()));
            }

            int consCount = jsonObj.getAsJsonPrimitive("consumer-count").getAsInt();
            info.put("consumer-count", String.format("%d", consCount));

            for (Metric metric : consumerMetrics) {
                metric.setValue(info.get(metric.getKey()));
            }

            // refresh table
            ((MergeAdapter) getListAdapter()).notifyDataSetChanged();
        }

        @Override
        public void onFailure(Exception e) {
            progress.dismiss();

            AlertDialog.Builder alertDialog = new AlertDialog.Builder(getActivity());

            alertDialog.setTitle(R.string.dialog_error_title).setMessage(e.getMessage())
                    .setPositiveButton(R.string.dialog_button_Bummer, null).setCancelable(false)
                    .setIcon(android.R.drawable.ic_dialog_alert).show();

        }
    });
}

From source file:org.cvasilak.jboss.mobile.admin.fragments.JMSTopicMetricsViewFragment.java

License:Open Source License

public void refresh() {
    progress = ProgressDialog.show(getSherlockActivity(), "", getString(R.string.queryingServer));

    application.getOperationsManager().fetchJMSQueueMetrics(topicName, JMSType.TOPIC, new Callback() {
        @Override/*from   ww w. ja va2  s  . c o m*/
        public void onSuccess(JsonElement reply) {
            progress.dismiss();

            JsonObject jsonObj = reply.getAsJsonObject();

            Map<String, String> info = new HashMap<String, String>();

            // common metrics
            int msgCount = jsonObj.getAsJsonPrimitive("message-count").getAsInt();
            int delivCount = jsonObj.getAsJsonPrimitive("delivering-count").getAsInt();
            float delivPerc = (msgCount != 0 ? ((float) delivCount / msgCount) * 100 : 0);
            int msgAdded = jsonObj.getAsJsonPrimitive("messages-added").getAsInt();

            info.put("message-count", String.format("%d", msgCount));
            info.put("delivering-count", String.format("%d (%.0f%%)", delivCount, delivPerc));
            info.put("messages-added", String.format("%d", msgAdded));

            for (Metric metric : inFlightMetrics) {
                metric.setValue(info.get(metric.getKey()));
            }

            int durCount = jsonObj.getAsJsonPrimitive("durable-message-count").getAsInt();
            float durPerc = (msgAdded != 0 ? ((float) durCount / msgAdded) * 100 : 0);

            int nonDurCount = jsonObj.getAsJsonPrimitive("non-durable-message-count").getAsInt();
            float nonDurPerc = (msgAdded != 0 ? ((float) nonDurCount / msgAdded) * 100 : 0);

            int subCount = jsonObj.getAsJsonPrimitive("subscription-count").getAsInt();
            int durSubCount = jsonObj.getAsJsonPrimitive("durable-subscription-count").getAsInt();
            int nonDurSubCount = jsonObj.getAsJsonPrimitive("non-durable-subscription-count").getAsInt();

            info.put("durable-message-count", String.format("%d (%.0f%%)", durCount, durPerc));
            info.put("non-durable-message-count", String.format("%d (%.0f%%)", nonDurCount, nonDurPerc));
            info.put("subscription-count", String.format("%d", subCount));
            info.put("durable-subscription-count", String.format("%d", durSubCount));
            info.put("non-durable-subscription-count", String.format("%d", nonDurSubCount));

            for (Metric metric : msgProcessedMetrics) {
                metric.setValue(info.get(metric.getKey()));
            }

            for (Metric metric : subscriptionMetrics) {
                metric.setValue(info.get(metric.getKey()));
            }

            // refresh table
            ((MergeAdapter) getListAdapter()).notifyDataSetChanged();
        }

        @Override
        public void onFailure(Exception e) {
            progress.dismiss();

            AlertDialog.Builder alertDialog = new AlertDialog.Builder(getActivity());

            alertDialog.setTitle(R.string.dialog_error_title).setMessage(e.getMessage())
                    .setPositiveButton(R.string.dialog_button_Bummer, null).setCancelable(false)
                    .setIcon(android.R.drawable.ic_dialog_alert).show();

        }
    });
}