Example usage for com.google.gson JsonElement getAsString

Introduction

In this page you can find the example usage for com.google.gson JsonElement getAsString.

Prototype

public String getAsString() 

Source Link

Document

convenience method to get this element as a string value.

Usage

From source file:cl.niclabs.tscrypto.common.datatypes.BigIntegerBase64TypeAdapter.java

License:Open Source License

@Override
public BigInteger deserialize(JsonElement json, Type typeOfT, JsonDeserializationContext context)
        throws JsonParseException {
    return new BigInteger(Base64.decodeBase64(json.getAsString()));
}

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From source file:classes.analysis.Analysis.java

License:Open Source License

private String generateXMLContent(JsonElement jsonCode, int level) {
    String content = "";
    if (jsonCode.isJsonPrimitive()) {
        content += jsonCode.getAsString();
    } else if (jsonCode.isJsonArray()) {
        content += "\n";
        for (JsonElement subelement : jsonCode.getAsJsonArray()) {
            content += this.generateXMLContent(subelement, level + 1);
        }/*  w  ww  .j a va  2  s .co  m*/
        content += "\n";
        content += String.join("", Collections.nCopies(level - 1, "\t"));
    } else if (jsonCode.isJsonObject()) {
        for (Map.Entry<String, JsonElement> entry : jsonCode.getAsJsonObject().entrySet()) {
            content += String.join("", Collections.nCopies(level, "\t")) + "<" + entry.getKey() + ">"
                    + this.generateXMLContent(entry.getValue(), level + 1) + "</" + entry.getKey() + ">\n";
        }
    }
    return content;
}

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From source file:classes.analysis.non_processed_data.IntermediateData.java

License:Open Source License

public static IntermediateData parseStepGalaxyData(JsonObject step_json_object, JsonObject analysisData,
        String emsuser) {//  w  ww. j  a va 2 s  .com
    IntermediateData step = new IntermediateData("STxxxx." + step_json_object.get("id").getAsString());
    step.setIntermediateDataType("preprocessing_step");
    step.setSoftware(step_json_object.get("tool_id").getAsString());
    step.setSoftwareVersion(step_json_object.get("tool_version").getAsString());
    HashSet<String> used_data = new HashSet<String>();
    if (step_json_object.has("used_data")) {
        for (JsonElement data : step_json_object.get("used_data").getAsJsonArray()) {
            used_data.add(data.getAsString());
        }
    }
    step.setUsedData(used_data.toArray(new String[] {}));

    String prefix = analysisData.get("experiment_id").getAsString() + "/"
            + analysisData.get("analysis_id").getAsString() + "/";
    ArrayList<String> outputs = new ArrayList<String>();
    for (JsonElement output : step_json_object.get("outputs").getAsJsonArray()) {
        outputs.add(prefix + output.getAsJsonObject().get("file").getAsString().replaceAll(" ", "_") + "."
                + output.getAsJsonObject().get("extension").getAsString());
    }
    step.setFilesLocation(outputs.toArray(new String[] {}));

    String description = "Step " + step_json_object.get("id").getAsString() + " in Galaxy history "
            + analysisData.get("history_id").getAsString() + ".\n";
    description += "The tool exited with code " + step_json_object.get("exit_code").getAsString() + "\n";
    description += "Outputs:\n";
    for (JsonElement output : step_json_object.get("outputs").getAsJsonArray()) {
        description += "  - " + output.getAsJsonObject().get("file").getAsString() + " (id:"
                + output.getAsJsonObject().get("id").getAsString() + ")\n";
    }
    step.setResults(description);

    description = "Step inputs:\n";
    for (JsonElement input : step_json_object.get("inputs").getAsJsonArray()) {
        description += "  - " + input.getAsJsonObject().get("file").getAsString() + " (id:"
                + input.getAsJsonObject().get("id").getAsString() + ")\n";
    }
    description += "\n";
    description += "Parameters:\n";
    for (JsonElement input : step_json_object.get("parameters").getAsJsonArray()) {
        description += Step.getParameterDescription(input.getAsJsonObject(), 1);
    }

    step.setSoftwareConfiguration(description);

    Date dateNow = new Date();
    SimpleDateFormat dateFormat = new SimpleDateFormat("yyyyMMdd");
    step.setSubmissionDate(dateFormat.format(dateNow));
    step.setLastEditionDate(dateFormat.format(dateNow));
    step.addOwner(new User(emsuser, ""));
    if (step_json_object.has("step_name")) {
        step.setStepName(step_json_object.get("step_name").getAsString());
    } else {
        step.setStepName(step_json_object.get("tool_id").getAsString());
    }
    step.setStepNumber(step_json_object.get("id").getAsInt());

    return step;
}

---

From source file:classes.analysis.ProcessedData.java

License:Open Source License

public static ProcessedData parseStepGalaxyData(JsonObject step_json_object, JsonObject analysisData,
        String emsuser) {/*from   w  w  w . j  a va2 s  . c o m*/
    ProcessedData step = new ProcessedData("STxxxx." + step_json_object.get("id").getAsString());
    step.setProcessedDataType("quantification_step");
    step.setSoftware(step_json_object.get("tool_id").getAsString());
    step.setSoftwareVersion(step_json_object.get("tool_version").getAsString());
    HashSet<String> used_data = new HashSet<String>();
    if (step_json_object.has("used_data")) {
        for (JsonElement data : step_json_object.get("used_data").getAsJsonArray()) {
            used_data.add(data.getAsString());
        }
    }
    step.setUsedData(used_data.toArray(new String[] {}));

    String prefix = analysisData.get("experiment_id").getAsString() + "/"
            + analysisData.get("analysis_id").getAsString() + "/";
    ArrayList<String> outputs = new ArrayList<String>();
    for (JsonElement output : step_json_object.get("outputs").getAsJsonArray()) {
        outputs.add(prefix + output.getAsJsonObject().get("file").getAsString().replaceAll(" ", "_") + "."
                + output.getAsJsonObject().get("extension").getAsString());
    }
    step.setFilesLocation(outputs.toArray(new String[] {}));

    String description = "Step " + step_json_object.get("id").getAsString() + " in Galaxy history "
            + analysisData.get("history_id").getAsString() + ".\n";
    description += "The tool exited with code " + step_json_object.get("exit_code").getAsString() + "\n";
    description += "Outputs:\n";
    for (JsonElement output : step_json_object.get("outputs").getAsJsonArray()) {
        description += "  - " + output.getAsJsonObject().get("file").getAsString() + " (id:"
                + output.getAsJsonObject().get("id").getAsString() + ")\n";
    }
    step.setResults(description);

    description = "Step inputs:\n";
    for (JsonElement input : step_json_object.get("inputs").getAsJsonArray()) {
        description += "  - " + input.getAsJsonObject().get("file").getAsString() + " (id:"
                + input.getAsJsonObject().get("id").getAsString() + ")\n";
    }
    description += "\n";
    description += "Parameters:\n";
    for (JsonElement input : step_json_object.get("parameters").getAsJsonArray()) {
        description += Step.getParameterDescription(input.getAsJsonObject(), 1);
    }

    step.setSoftwareConfiguration(description);

    Date dateNow = new Date();
    SimpleDateFormat dateFormat = new SimpleDateFormat("yyyyMMdd");
    step.setSubmissionDate(dateFormat.format(dateNow));
    step.setLastEditionDate(dateFormat.format(dateNow));
    step.addOwner(new User(emsuser, ""));
    step.setStepName(step_json_object.get("tool_id").getAsString());
    step.setStepNumber(step_json_object.get("id").getAsInt());

    return step;
}

---

From source file:classes.analysis.Step.java

License:Open Source License

protected static String getParameterDescription(JsonElement parameter, int level) {
    if (parameter.isJsonPrimitive()) {
        return parameter.getAsString() + "\n";
    }/*from www  .j a  v a2s.c  o  m*/

    if (parameter.isJsonArray()) {
        String description = "";
        String prefix = "";
        for (int i = 0; i < level; i++) {
            prefix += "  ";
        }

        for (JsonElement element : parameter.getAsJsonArray()) {
            description += prefix + Step.getParameterDescription(element, level + 1);
        }

        return description;
    }

    if (parameter.isJsonObject()) {
        String description = "";
        String prefix = "";
        for (int i = 0; i < level; i++) {
            prefix += "  ";
        }

        for (Map.Entry<String, JsonElement> member : parameter.getAsJsonObject().entrySet()) {
            description += prefix + "- " + member.getKey() + ": "
                    + Step.getParameterDescription(member.getValue(), level + 1);
        }
        return description;
    }

    return "";
}

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From source file:client.utils.Settings.java

License:Apache License

private void getSettingsFromJson() throws IOException {
    JsonParser parser = new JsonParser();
    if (!this.fo.exists() || !this.fo.exists() || !(this.fi.length() > 0)) {
        this.writeDefault();
    }//  www.  j  a  v a2s .c  o  m
    JsonElement obj = parser.parse(new FileReader("settings/config.json"));
    this.settings = obj.getAsJsonObject();
    if (this.settings.toString().contains("null")) {
        System.out.println("Please set up your settings first");
        System.exit(0);
    } else {
        this.user = this.settings.get("username").getAsString();
        this.token = this.settings.get("token").getAsString();
        this.clientid = this.settings.get("clientid").getAsString();
        this.oauth = this.settings.get("oauth").getAsString();
        this.pointsToAdd = this.settings.get("point_increment").getAsInt();
        this.interval = this.settings.get("point_interval").getAsInt();
        JsonArray arr = this.settings.get("channels").getAsJsonArray();
        for (JsonElement chan : arr) {
            channels.add(chan.getAsString());
        }
    }
}

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From source file:cloud.google.datastore.entity.commit.Commit.java

License:Apache License

private String getTransaction() {
    String result = ConnectionService
            .connect(GCDStatic.getDatastoreApiUrl() + config.getProjectName() + "/beginTransaction").body("")
            .accessToken(AuthenticationFactory.getInstance(config).getAccessToken()).post();
    JsonElement jelement = new JsonParser().parse(result);
    JsonObject jobject = jelement.getAsJsonObject();
    jelement = jobject.get("transaction");
    return jelement != null ? jelement.getAsString() : "";
}

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From source file:cloud.google.oauth2.MyWayAuthentication.java

License:Apache License

/**
 * Just return access token//from   w w w . j  a  v  a2  s  . c om
 * */
@Override
public String getAccessToken() {
    try {
        long iat = (System.currentTimeMillis() / 1000) - 60;
        long exp = iat + 3600;
        String urlParameters = "grant_type=" + GCDStatic.getGrant() + "&assertion=" + getAssertion(exp, iat);

        String result = ConnectionService.connect(GCDStatic.getAud()).body(urlParameters)
                .header("Content-Type", "application/x-www-form-urlencoded").post();
        JsonElement jelement = new JsonParser().parse(result);
        JsonObject jobject = jelement.getAsJsonObject();
        jelement = jobject.get("access_token");
        return jelement != null ? jelement.getAsString() : "";
    } catch (Exception e) {
        e.printStackTrace();
    }
    return "";
}

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From source file:cmput301.f13t01.elasticsearch.InterfaceAdapter.java

License:GNU General Public License

private Type typeForName(final JsonElement typeElem) {
    try {/*from   ww  w. ja  va 2s . c  om*/
        return Class.forName(typeElem.getAsString());
    } catch (ClassNotFoundException e) {
        throw new JsonParseException(e);
    }
}

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From source file:cn.edu.zjnu.acm.judge.util.excel.ExcelUtil.java

License:Apache License

private static <T> List<T> parse(Workbook workbook, FormulaEvaluator evaluator, Class<T> type, Locale locale) {
    MetaInfo metaInfo = MetaInfo.forType(type, locale);
    Sheet sheet = workbook.getSheetAt(workbook.getActiveSheetIndex());
    Iterator<Row> rows = sheet.rowIterator();
    if (!rows.hasNext()) {
        return Collections.emptyList();
    }/*from w ww.j  ava2  s .  c o  m*/
    Row firstRow = rows.next();
    Map<Integer, String> columnIndexToFieldName = Maps.newHashMapWithExpectedSize(metaInfo.size());
    for (Iterator<Cell> it = firstRow.cellIterator(); it.hasNext();) {
        Cell cell = it.next();
        JsonElement jsonElement = parseAsJsonElement(cell, evaluator);
        if (jsonElement != null) {
            Field field = metaInfo.getField(jsonElement.getAsString());
            if (field != null) {
                String name = field.getName();
                int index = cell.getColumnIndex();
                columnIndexToFieldName.put(index, name);
            }
        }
    }
    if (columnIndexToFieldName.isEmpty()) {
        return Collections.emptyList();
    }
    List<T> result = new ArrayList<>(sheet.getLastRowNum() - sheet.getFirstRowNum());
    while (rows.hasNext()) {
        result.add(parseRow(evaluator, rows.next(), columnIndexToFieldName, type));
    }
    return result;
}

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