Download GDAV Free Java Code

README// w ww  .j a v  a  2s .c  o  m
build.xml
gdav-das-server/README
gdav-das-server/build.xml
gdav-das-server/das.war
gdav-das-server/src/org/biojava/servlets/dazzle/DazzleServlet.java
gdav-das-server/src/org/biojava/servlets/dazzle/datasource/AbstractDataSource.java
gdav-das-server/src/org/biojava/servlets/dazzle/datasource/DazzleDataSource.java
gdav-das-server/src/org/vectorbase/gdav/dazzle/AlignmentSource.java
gdav-das-server/src/org/vectorbase/gdav/dazzle/GeneSource.java
gdav-das-server/webapp/WEB-INF/classes/org/biojava/servlets/dazzle/DazzleServlet$1$1.class
gdav-das-server/webapp/WEB-INF/classes/org/biojava/servlets/dazzle/DazzleServlet$1.class
gdav-das-server/webapp/WEB-INF/classes/org/biojava/servlets/dazzle/DazzleServlet$DataSourceXFFHelper.class
gdav-das-server/webapp/WEB-INF/classes/org/biojava/servlets/dazzle/DazzleServlet$Segment.class
gdav-das-server/webapp/WEB-INF/classes/org/biojava/servlets/dazzle/DazzleServlet.class
gdav-das-server/webapp/WEB-INF/classes/org/biojava/servlets/dazzle/datasource/AbstractDataSource.class
gdav-das-server/webapp/WEB-INF/classes/org/biojava/servlets/dazzle/datasource/DazzleDataSource$1.class
gdav-das-server/webapp/WEB-INF/classes/org/biojava/servlets/dazzle/datasource/DazzleDataSource$MatchType.class
gdav-das-server/webapp/WEB-INF/classes/org/biojava/servlets/dazzle/datasource/DazzleDataSource.class
gdav-das-server/webapp/WEB-INF/classes/org/vectorbase/gdav/dazzle/AlignmentSource.class
gdav-das-server/webapp/WEB-INF/classes/org/vectorbase/gdav/dazzle/GeneSource.class
gdav-das-server/webapp/WEB-INF/lib/biojava.jar
gdav-das-server/webapp/WEB-INF/lib/bytecode.jar
gdav-das-server/webapp/WEB-INF/lib/commons-collections-2.1.jar
gdav-das-server/webapp/WEB-INF/lib/commons-dbcp-1.1.jar
gdav-das-server/webapp/WEB-INF/lib/commons-pool-1.1.jar
gdav-das-server/webapp/WEB-INF/lib/dazzle.jar
gdav-das-server/webapp/WEB-INF/lib/gdav.jar
gdav-das-server/webapp/WEB-INF/lib/mysql-connector-java-3.0.10-stable-bin.jar
gdav-das-server/webapp/WEB-INF/lib/servlet.jar
gdav-das-server/webapp/WEB-INF/web.xml
gdav-das-server/webapp/dazzlecfg.xml
gdav-das-server/webapp/empty.style
gdav-das-server/webapp/welcome.html
gdav-db-utils/loader_scripts/load-alignments-from-gff3.pl
gdav-db-utils/loader_scripts/load-annotations-from-tsv.pl
gdav-db-utils/loader_scripts/load-seqs-from-fasta.pl
gdav-db-utils/utility_scripts/blastx-top-hit-to-tsv.pl
gdav-db-utils/utility_scripts/iprscan-raw-to-tsv.pl
gdav-db-utils/utility_scripts/reformat-exonerate-targetgff-to-gff3.pl
gdav-db-utils/utility_scripts/tgi-cluster-ace-to-tsv.pl
gdav-tutorial/README
gdav-tutorial/example-data/README
gdav-tutorial/example-data/fasta/Aedes5.fasta
gdav-tutorial/example-data/gff3/Aedes5-vs-AgamP3.coding2genome.gff3
gdav-tutorial/example-data/gff3/Aedes5-vs-AgamP3.tblastx.gff3
gdav-tutorial/example-data/raw_output/Aedes5-vs-AgamP3.4.blastx.out
gdav-tutorial/example-data/raw_output/Aedes5-vs-AgamP3.coding2genome.out
gdav-tutorial/example-data/raw_output/Aedes5-vs-AgamP3.tblastx.out
gdav-tutorial/example-data/raw_output/Aedes5.iprscan.raw
gdav-tutorial/example-data/tsv/Aedes5-vs-AgamP3.4.blastx-best.tsv
gdav-tutorial/example-data/tsv/Aedes5.cluster-info.tsv
gdav-tutorial/example-data/tsv/Aedes5.iprscan.tsv
gdav-webapp/build.xml
gdav-webapp/build/classes/org/vectorbase/gdav/ConfigInfo.class
gdav-webapp/build/classes/org/vectorbase/gdav/DBSQL/DBConnection.class
gdav-webapp/build/classes/org/vectorbase/gdav/DisplayServlet.class
gdav-webapp/build/classes/org/vectorbase/gdav/GdavServlet.class
gdav-webapp/build/classes/org/vectorbase/gdav/ServletInfo.class
gdav-webapp/build/classes/org/vectorbase/gdav/beans/Alignment.class
gdav-webapp/build/classes/org/vectorbase/gdav/beans/AnnotationRow.class
gdav-webapp/build/classes/org/vectorbase/gdav/beans/AnnotationTable.class
gdav-webapp/build/classes/org/vectorbase/gdav/beans/Model.class
gdav-webapp/build/classes/org/vectorbase/gdav/beans/Submission.class
gdav-webapp/gdav.war
gdav-webapp/lib/biojava-ensembl.jar
gdav-webapp/lib/biojava.jar
gdav-webapp/lib/bytecode.jar
gdav-webapp/lib/commons-beanutils-1.7.0.jar
gdav-webapp/lib/commons-collections-3.1.jar
gdav-webapp/lib/commons-dbcp-1.1.jar
gdav-webapp/lib/commons-lang-2.3.jar
gdav-webapp/lib/commons-logging-1.1.1.jar
gdav-webapp/lib/commons-pool-1.1.jar
gdav-webapp/lib/dazzle.jar
gdav-webapp/lib/displaytag-1.2.jar
gdav-webapp/lib/gdav.jar
gdav-webapp/lib/jstl.jar
gdav-webapp/lib/log4j-1.2.13.jar
gdav-webapp/lib/mysql-connector-java-3.0.10-stable-bin.jar
gdav-webapp/lib/standard.jar
gdav-webapp/sql/schema.sql
gdav-webapp/src/org/vectorbase/gdav/ConfigInfo.java
gdav-webapp/src/org/vectorbase/gdav/DBSQL/DBConnection.java
gdav-webapp/src/org/vectorbase/gdav/DisplayServlet.java
gdav-webapp/src/org/vectorbase/gdav/GdavServlet.java
gdav-webapp/src/org/vectorbase/gdav/ServletInfo.java
gdav-webapp/src/org/vectorbase/gdav/beans/Alignment.java
gdav-webapp/src/org/vectorbase/gdav/beans/AnnotationRow.java
gdav-webapp/src/org/vectorbase/gdav/beans/AnnotationTable.java
gdav-webapp/src/org/vectorbase/gdav/beans/Model.java
gdav-webapp/src/org/vectorbase/gdav/beans/Submission.java
gdav-webapp/src_war/WEB-INF/tld/c-1_0-rt.tld
gdav-webapp/src_war/WEB-INF/tld/c-1_0.tld
gdav-webapp/src_war/WEB-INF/tld/c.tld
gdav-webapp/src_war/WEB-INF/tld/fmt-1_0-rt.tld
gdav-webapp/src_war/WEB-INF/tld/fmt-1_0.tld
gdav-webapp/src_war/WEB-INF/tld/fmt.tld
gdav-webapp/src_war/WEB-INF/tld/fn.tld
gdav-webapp/src_war/WEB-INF/tld/permittedTaglibs.tld
gdav-webapp/src_war/WEB-INF/tld/scriptfree.tld
gdav-webapp/src_war/WEB-INF/tld/sql-1_0-rt.tld
gdav-webapp/src_war/WEB-INF/tld/sql-1_0.tld
gdav-webapp/src_war/WEB-INF/tld/sql.tld
gdav-webapp/src_war/WEB-INF/tld/x-1_0-rt.tld
gdav-webapp/src_war/WEB-INF/tld/x-1_0.tld
gdav-webapp/src_war/WEB-INF/tld/x.tld
gdav-webapp/src_war/config.xml
gdav-webapp/src_war/docs/api/allclasses-frame.html
gdav-webapp/src_war/docs/api/allclasses-noframe.html
gdav-webapp/src_war/docs/api/constant-values.html
gdav-webapp/src_war/docs/api/deprecated-list.html
gdav-webapp/src_war/docs/api/help-doc.html
gdav-webapp/src_war/docs/api/index-all.html
gdav-webapp/src_war/docs/api/index.html
gdav-webapp/src_war/docs/api/org/vectorbase/gdav/ConfigInfo.html
gdav-webapp/src_war/docs/api/org/vectorbase/gdav/DBSQL/DBConnection.html
gdav-webapp/src_war/docs/api/org/vectorbase/gdav/DBSQL/package-frame.html
gdav-webapp/src_war/docs/api/org/vectorbase/gdav/DBSQL/package-summary.html
gdav-webapp/src_war/docs/api/org/vectorbase/gdav/DBSQL/package-tree.html
gdav-webapp/src_war/docs/api/org/vectorbase/gdav/DisplayServlet.html
gdav-webapp/src_war/docs/api/org/vectorbase/gdav/GdavServlet.html
gdav-webapp/src_war/docs/api/org/vectorbase/gdav/ServletInfo.html
gdav-webapp/src_war/docs/api/org/vectorbase/gdav/beans/Alignment.html
gdav-webapp/src_war/docs/api/org/vectorbase/gdav/beans/AnnotationRow.html
gdav-webapp/src_war/docs/api/org/vectorbase/gdav/beans/AnnotationTable.html
gdav-webapp/src_war/docs/api/org/vectorbase/gdav/beans/Model.html
gdav-webapp/src_war/docs/api/org/vectorbase/gdav/beans/Submission.html
gdav-webapp/src_war/docs/api/org/vectorbase/gdav/beans/package-frame.html
gdav-webapp/src_war/docs/api/org/vectorbase/gdav/beans/package-summary.html
gdav-webapp/src_war/docs/api/org/vectorbase/gdav/beans/package-tree.html
gdav-webapp/src_war/docs/api/org/vectorbase/gdav/package-frame.html
gdav-webapp/src_war/docs/api/org/vectorbase/gdav/package-summary.html
gdav-webapp/src_war/docs/api/org/vectorbase/gdav/package-tree.html
gdav-webapp/src_war/docs/api/overview-frame.html
gdav-webapp/src_war/docs/api/overview-summary.html
gdav-webapp/src_war/docs/api/overview-tree.html
gdav-webapp/src_war/docs/api/package-list
gdav-webapp/src_war/docs/api/resources/inherit.gif
gdav-webapp/src_war/docs/api/serialized-form.html
gdav-webapp/src_war/docs/api/stylesheet.css
gdav-webapp/src_war/gdav.xml
gdav-webapp/src_war/images/VectorBase-logo.png
gdav-webapp/src_war/images/VectorBase-logo_lg.png
gdav-webapp/src_war/images/VectorBase-logo_tx.png
gdav-webapp/src_war/images/gdav-logo.png
gdav-webapp/src_war/images/logo.jpg
gdav-webapp/src_war/includes/headers.jsp
gdav-webapp/src_war/includes/logoPanel.jsp
gdav-webapp/src_war/includes/menu.jsp
gdav-webapp/src_war/includes/searchForm.jsp
gdav-webapp/src_war/model.jsp
gdav-webapp/src_war/models.jsp
gdav-webapp/src_war/stylesheets/stylesheet.css
gdav-webapp/src_war/submission.jsp
gdav-webapp/src_war/submissions.jsp
gdav-webapp/src_war/web.xml
gdav-webapp/src_war/welcome.jsp
gpl.txt