Download picard-1.26.jar
picard/picard-1.26.jar.zip( 249 k)
The download jar file contains the following class files or Java source files.
META-INF/MANIFEST.MF
net.sf.picard.PicardException.class
net.sf.picard.analysis.AlignmentSummaryMetrics.class
net.sf.picard.analysis.CollectAlignmentSummaryMetrics.class
net.sf.picard.analysis.CollectGcBiasMetrics.class
net.sf.picard.analysis.CollectInsertSizeMetrics.class
net.sf.picard.analysis.GcBiasDetailMetrics.class
net.sf.picard.analysis.GcBiasSummaryMetrics.class
net.sf.picard.analysis.InsertSizeMetrics.class
net.sf.picard.analysis.MeanQualityByCycle.class
net.sf.picard.analysis.QualityScoreDistribution.class
net.sf.picard.analysis.directed.CalculateHsMetrics.class
net.sf.picard.analysis.directed.HsMetrics.class
net.sf.picard.analysis.directed.HsMetricsCalculator.class
net.sf.picard.cmdline.CommandLineParseException.class
net.sf.picard.cmdline.CommandLineParser.class
net.sf.picard.cmdline.CommandLineParserDefinitionException.class
net.sf.picard.cmdline.CommandLineProgram.class
net.sf.picard.cmdline.CreateHtmlDocForProgram.class
net.sf.picard.cmdline.Option.class
net.sf.picard.cmdline.PositionalArguments.class
net.sf.picard.cmdline.StandardOptionDefinitions.class
net.sf.picard.cmdline.Usage.class
net.sf.picard.fastq.BamToBfq.class
net.sf.picard.fastq.BamToBfqWriter.class
net.sf.picard.fastq.FastqConstants.class
net.sf.picard.fastq.FastqReader.class
net.sf.picard.fastq.FastqRecord.class
net.sf.picard.fastq.FastqWriter.class
net.sf.picard.filter.AggregateFilter.class
net.sf.picard.filter.DuplicateReadFilter.class
net.sf.picard.filter.FailsVendorReadQualityFilter.class
net.sf.picard.filter.FilteringIterator.class
net.sf.picard.filter.IntervalFilter.class
net.sf.picard.filter.NotPrimaryAlignmentFilter.class
net.sf.picard.filter.SamRecordFilter.class
net.sf.picard.filter.SolexaNoiseFilter.class
net.sf.picard.filter.TagFilter.class
net.sf.picard.filter.WholeReadClippedFilter.class
net.sf.picard.io.FastLineReader.class
net.sf.picard.io.IoUtil.class
net.sf.picard.liftover.Chain.class
net.sf.picard.liftover.LiftOver.class
net.sf.picard.metrics.AggregateMetricCollector.class
net.sf.picard.metrics.Header.class
net.sf.picard.metrics.MetricBase.class
net.sf.picard.metrics.MetricCollector.class
net.sf.picard.metrics.MetricsFile.class
net.sf.picard.metrics.StringHeader.class
net.sf.picard.metrics.VersionHeader.class
net.sf.picard.reference.AbstractFastaSequenceFile.class
net.sf.picard.reference.FastaSequenceFile.class
net.sf.picard.reference.FastaSequenceIndex.class
net.sf.picard.reference.FastaSequenceIndexEntry.class
net.sf.picard.reference.IndexedFastaSequenceFile.class
net.sf.picard.reference.NormalizeFasta.class
net.sf.picard.reference.ReferenceSequence.class
net.sf.picard.reference.ReferenceSequenceFile.class
net.sf.picard.reference.ReferenceSequenceFileFactory.class
net.sf.picard.reference.ReferenceSequenceFileWalker.class
net.sf.picard.sam.AbstractAlignmentMerger.class
net.sf.picard.sam.AbstractDuplicateFindingAlgorithm.class
net.sf.picard.sam.CigarClippingIterator.class
net.sf.picard.sam.CleanSam.class
net.sf.picard.sam.ComparableSamRecordIterator.class
net.sf.picard.sam.CompareSAMs.class
net.sf.picard.sam.CreateSequenceDictionary.class
net.sf.picard.sam.DiskReadEndsMap.class
net.sf.picard.sam.DuplicationMetrics.class
net.sf.picard.sam.EstimateLibraryComplexity.class
net.sf.picard.sam.FastqToSam.class
net.sf.picard.sam.FixMateInformation.class
net.sf.picard.sam.MarkDuplicates.class
net.sf.picard.sam.MergeBamAlignment.class
net.sf.picard.sam.MergeSamFiles.class
net.sf.picard.sam.MergingSamRecordIterator.class
net.sf.picard.sam.RAMReadEndsMap.class
net.sf.picard.sam.ReadEnds.class
net.sf.picard.sam.ReadEndsCodec.class
net.sf.picard.sam.ReadEndsMap.class
net.sf.picard.sam.ReplaceSamHeader.class
net.sf.picard.sam.ReservedTagConstants.class
net.sf.picard.sam.RevertSam.class
net.sf.picard.sam.SamAlignmentMerger.class
net.sf.picard.sam.SamFileHeaderMerger.class
net.sf.picard.sam.SamFileValidator.class
net.sf.picard.sam.SamFormatConverter.class
net.sf.picard.sam.SamPairUtil.class
net.sf.picard.sam.SamToFastq.class
net.sf.picard.sam.SortSam.class
net.sf.picard.sam.ValidateSamFile.class
net.sf.picard.sam.ViewSam.class
net.sf.picard.util.BaiToText.class
net.sf.picard.util.BamIndexStats.class
net.sf.picard.util.BuildBamIndex.class
net.sf.picard.util.CigarUtil.class
net.sf.picard.util.FastqQualityFormat.class
net.sf.picard.util.FileAppendStreamLRUCache.class
net.sf.picard.util.FormatUtil.class
net.sf.picard.util.Histogram.class
net.sf.picard.util.IlluminaUtil.class
net.sf.picard.util.Interval.class
net.sf.picard.util.IntervalCoordinateComparator.class
net.sf.picard.util.IntervalList.class
net.sf.picard.util.IntervalListReferenceSequenceMask.class
net.sf.picard.util.IntervalTree.class
net.sf.picard.util.IntervalUtil.class
net.sf.picard.util.Locus.class
net.sf.picard.util.LocusComparator.class
net.sf.picard.util.LocusImpl.class
net.sf.picard.util.Log.class
net.sf.picard.util.MetricsDoclet.class
net.sf.picard.util.OverlapDetector.class
net.sf.picard.util.PeekableIterator.class
net.sf.picard.util.ProcessExecutor.class
net.sf.picard.util.QualityUtil.class
net.sf.picard.util.RExecutor.class
net.sf.picard.util.ReferenceSequenceMask.class
net.sf.picard.util.ResourceLimitedMap.class
net.sf.picard.util.ResourceLimitedMapFunctor.class
net.sf.picard.util.SamLocusIterator.class
net.sf.picard.util.SamRecordIntervalIterator.class
net.sf.picard.util.SamRecordIntervalIteratorFactory.class
net.sf.picard.util.SolexaQualityConverter.class
net.sf.picard.util.WholeGenomeReferenceSequenceMask.class
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