Download picard-1.25.jar
picard/picard-1.25.jar.zip( 247 k)
The download jar file contains the following class files or Java source files.
META-INF/MANIFEST.MF net.sf.picard.PicardException.class net.sf.picard.analysis.AlignmentSummaryMetrics.class net.sf.picard.analysis.CollectAlignmentSummaryMetrics.class net.sf.picard.analysis.CollectGcBiasMetrics.class net.sf.picard.analysis.CollectInsertSizeMetrics.class net.sf.picard.analysis.GcBiasDetailMetrics.class net.sf.picard.analysis.GcBiasSummaryMetrics.class net.sf.picard.analysis.InsertSizeMetrics.class net.sf.picard.analysis.MeanQualityByCycle.class net.sf.picard.analysis.QualityScoreDistribution.class net.sf.picard.analysis.directed.CalculateHsMetrics.class net.sf.picard.analysis.directed.HsMetrics.class net.sf.picard.analysis.directed.HsMetricsCalculator.class net.sf.picard.cmdline.CommandLineParseException.class net.sf.picard.cmdline.CommandLineParser.class net.sf.picard.cmdline.CommandLineParserDefinitionException.class net.sf.picard.cmdline.CommandLineProgram.class net.sf.picard.cmdline.CreateHtmlDocForProgram.class net.sf.picard.cmdline.Option.class net.sf.picard.cmdline.PositionalArguments.class net.sf.picard.cmdline.StandardOptionDefinitions.class net.sf.picard.cmdline.Usage.class net.sf.picard.fastq.BamToBfq.class net.sf.picard.fastq.BamToBfqWriter.class net.sf.picard.fastq.FastqConstants.class net.sf.picard.fastq.FastqReader.class net.sf.picard.fastq.FastqRecord.class net.sf.picard.fastq.FastqWriter.class net.sf.picard.filter.AggregateFilter.class net.sf.picard.filter.DuplicateReadFilter.class net.sf.picard.filter.FailsVendorReadQualityFilter.class net.sf.picard.filter.FilteringIterator.class net.sf.picard.filter.IntervalFilter.class net.sf.picard.filter.NotPrimaryAlignmentFilter.class net.sf.picard.filter.SamRecordFilter.class net.sf.picard.filter.SolexaNoiseFilter.class net.sf.picard.filter.TagFilter.class net.sf.picard.filter.WholeReadClippedFilter.class net.sf.picard.io.FastLineReader.class net.sf.picard.io.IoUtil.class net.sf.picard.liftover.Chain.class net.sf.picard.liftover.LiftOver.class net.sf.picard.metrics.AggregateMetricCollector.class net.sf.picard.metrics.Header.class net.sf.picard.metrics.MetricBase.class net.sf.picard.metrics.MetricCollector.class net.sf.picard.metrics.MetricsFile.class net.sf.picard.metrics.StringHeader.class net.sf.picard.metrics.VersionHeader.class net.sf.picard.reference.AbstractFastaSequenceFile.class net.sf.picard.reference.FastaSequenceFile.class net.sf.picard.reference.FastaSequenceIndex.class net.sf.picard.reference.FastaSequenceIndexEntry.class net.sf.picard.reference.IndexedFastaSequenceFile.class net.sf.picard.reference.NormalizeFasta.class net.sf.picard.reference.ReferenceSequence.class net.sf.picard.reference.ReferenceSequenceFile.class net.sf.picard.reference.ReferenceSequenceFileFactory.class net.sf.picard.reference.ReferenceSequenceFileWalker.class net.sf.picard.sam.AbstractAlignmentMerger.class net.sf.picard.sam.AbstractDuplicateFindingAlgorithm.class net.sf.picard.sam.CigarClippingIterator.class net.sf.picard.sam.CleanSam.class net.sf.picard.sam.ComparableSamRecordIterator.class net.sf.picard.sam.CompareSAMs.class net.sf.picard.sam.CreateSequenceDictionary.class net.sf.picard.sam.DiskReadEndsMap.class net.sf.picard.sam.DuplicationMetrics.class net.sf.picard.sam.EstimateLibraryComplexity.class net.sf.picard.sam.FastqToSam.class net.sf.picard.sam.FixMateInformation.class net.sf.picard.sam.MarkDuplicates.class net.sf.picard.sam.MergeBamAlignment.class net.sf.picard.sam.MergeSamFiles.class net.sf.picard.sam.MergingSamRecordIterator.class net.sf.picard.sam.RAMReadEndsMap.class net.sf.picard.sam.ReadEnds.class net.sf.picard.sam.ReadEndsCodec.class net.sf.picard.sam.ReadEndsMap.class net.sf.picard.sam.ReplaceSamHeader.class net.sf.picard.sam.ReservedTagConstants.class net.sf.picard.sam.RevertSam.class net.sf.picard.sam.SamAlignmentMerger.class net.sf.picard.sam.SamFileHeaderMerger.class net.sf.picard.sam.SamFileValidator.class net.sf.picard.sam.SamFormatConverter.class net.sf.picard.sam.SamPairUtil.class net.sf.picard.sam.SamToFastq.class net.sf.picard.sam.SortSam.class net.sf.picard.sam.ValidateSamFile.class net.sf.picard.sam.ViewSam.class net.sf.picard.util.BaiToText.class net.sf.picard.util.BuildBamIndex.class net.sf.picard.util.CigarUtil.class net.sf.picard.util.FastqQualityFormat.class net.sf.picard.util.FileAppendStreamLRUCache.class net.sf.picard.util.FormatUtil.class net.sf.picard.util.Histogram.class net.sf.picard.util.IlluminaUtil.class net.sf.picard.util.Interval.class net.sf.picard.util.IntervalCoordinateComparator.class net.sf.picard.util.IntervalList.class net.sf.picard.util.IntervalListReferenceSequenceMask.class net.sf.picard.util.IntervalTree.class net.sf.picard.util.IntervalUtil.class net.sf.picard.util.Locus.class net.sf.picard.util.LocusComparator.class net.sf.picard.util.LocusImpl.class net.sf.picard.util.Log.class net.sf.picard.util.MetricsDoclet.class net.sf.picard.util.OverlapDetector.class net.sf.picard.util.PeekableIterator.class net.sf.picard.util.ProcessExecutor.class net.sf.picard.util.QualityUtil.class net.sf.picard.util.RExecutor.class net.sf.picard.util.ReferenceSequenceMask.class net.sf.picard.util.ResourceLimitedMap.class net.sf.picard.util.ResourceLimitedMapFunctor.class net.sf.picard.util.SamLocusIterator.class net.sf.picard.util.SamRecordIntervalIterator.class net.sf.picard.util.SamRecordIntervalIteratorFactory.class net.sf.picard.util.SolexaQualityConverter.class net.sf.picard.util.WholeGenomeReferenceSequenceMask.class