Download biojava3-core-3.0-sources.jar
biojava3/biojava3-core-3.0-sources.jar.zip( 171 k)
The download jar file contains the following class files or Java source files.
META-INF/MANIFEST.MF
org.biojava3.core.exceptions.CompoundNotFoundError.java
org.biojava3.core.exceptions.FileAccessError.java
org.biojava3.core.exceptions.HeaderParseException.java
org.biojava3.core.exceptions.ParserException.java
org.biojava3.core.exceptions.SequenceLengthError.java
org.biojava3.core.exceptions.TranslationException.java
org.biojava3.core.sequence.AccessionID.java
org.biojava3.core.sequence.BasicSequence.java
org.biojava3.core.sequence.CDSComparator.java
org.biojava3.core.sequence.CDSSequence.java
org.biojava3.core.sequence.ChromosomeSequence.java
org.biojava3.core.sequence.DNASequence.java
org.biojava3.core.sequence.DataSource.java
org.biojava3.core.sequence.ExonComparator.java
org.biojava3.core.sequence.ExonSequence.java
org.biojava3.core.sequence.GeneSequence.java
org.biojava3.core.sequence.IntronSequence.java
org.biojava3.core.sequence.MultipleSequenceAlignment.java
org.biojava3.core.sequence.ProteinSequence.java
org.biojava3.core.sequence.RNASequence.java
org.biojava3.core.sequence.SequenceComparator.java
org.biojava3.core.sequence.SequenceOptimizationHints.java
org.biojava3.core.sequence.StartCodonSequence.java
org.biojava3.core.sequence.StopCodonSequence.java
org.biojava3.core.sequence.Strand.java
org.biojava3.core.sequence.TaxonomyID.java
org.biojava3.core.sequence.TranscriptSequence.java
org.biojava3.core.sequence.compound.AmbiguityDNACompoundSet.java
org.biojava3.core.sequence.compound.AmbiguityRNACompoundSet.java
org.biojava3.core.sequence.compound.AminoAcidCompound.java
org.biojava3.core.sequence.compound.AminoAcidCompoundSet.java
org.biojava3.core.sequence.compound.CodonCompound.java
org.biojava3.core.sequence.compound.DNACompoundSet.java
org.biojava3.core.sequence.compound.NucleotideCompound.java
org.biojava3.core.sequence.compound.RNACompoundSet.java
org.biojava3.core.sequence.edits.Edit.java
org.biojava3.core.sequence.features.AbstractFeature.java
org.biojava3.core.sequence.features.DBReferenceInfo.java
org.biojava3.core.sequence.features.DatabaseReferenceInterface.java
org.biojava3.core.sequence.features.FeatureInterface.java
org.biojava3.core.sequence.features.FeaturesKeyWordInterface.java
org.biojava3.core.sequence.features.QuantityFeature.java
org.biojava3.core.sequence.features.TextFeature.java
org.biojava3.core.sequence.io.BufferedReaderBytesRead.java
org.biojava3.core.sequence.io.DNASequenceCreator.java
org.biojava3.core.sequence.io.FastaGeneWriter.java
org.biojava3.core.sequence.io.FastaReader.java
org.biojava3.core.sequence.io.FastaReaderHelper.java
org.biojava3.core.sequence.io.FastaSequenceParser.java
org.biojava3.core.sequence.io.FastaWriter.java
org.biojava3.core.sequence.io.FastaWriterHelper.java
org.biojava3.core.sequence.io.FileProxyProteinSequenceCreator.java
org.biojava3.core.sequence.io.GenericFastaHeaderFormat.java
org.biojava3.core.sequence.io.GenericFastaHeaderParser.java
org.biojava3.core.sequence.io.IUPACParser.java
org.biojava3.core.sequence.io.ProteinSequenceCreator.java
org.biojava3.core.sequence.io.RNASequenceCreator.java
org.biojava3.core.sequence.io.template.FastaHeaderFormatInterface.java
org.biojava3.core.sequence.io.template.FastaHeaderParserInterface.java
org.biojava3.core.sequence.io.template.SequenceCreatorInterface.java
org.biojava3.core.sequence.io.template.SequenceParserInterface.java
org.biojava3.core.sequence.io.util.ClasspathResource.java
org.biojava3.core.sequence.io.util.IOUtils.java
org.biojava3.core.sequence.loader.ArrayListProxySequenceReader.java
org.biojava3.core.sequence.loader.SequenceFileProxyLoader.java
org.biojava3.core.sequence.loader.StringProxySequenceReader.java
org.biojava3.core.sequence.loader.UniprotProxySequenceReader.java
org.biojava3.core.sequence.location.FuzzyPoint.java
org.biojava3.core.sequence.location.InsdcLocations.java
org.biojava3.core.sequence.location.InsdcParser.java
org.biojava3.core.sequence.location.LocationHelper.java
org.biojava3.core.sequence.location.SequenceLocation.java
org.biojava3.core.sequence.location.SimpleLocation.java
org.biojava3.core.sequence.location.SimplePoint.java
org.biojava3.core.sequence.location.template.AbstractLocation.java
org.biojava3.core.sequence.location.template.AccesionedLocation.java
org.biojava3.core.sequence.location.template.Location.java
org.biojava3.core.sequence.location.template.Point.java
org.biojava3.core.sequence.storage.ArrayListSequenceReader.java
org.biojava3.core.sequence.storage.BitSequenceReader.java
org.biojava3.core.sequence.storage.FourBitSequenceReader.java
org.biojava3.core.sequence.storage.JoiningSequenceReader.java
org.biojava3.core.sequence.storage.SequenceAsStringHelper.java
org.biojava3.core.sequence.storage.SingleCompoundSequenceReader.java
org.biojava3.core.sequence.storage.TwoBitSequenceReader.java
org.biojava3.core.sequence.template.AbstractCompound.java
org.biojava3.core.sequence.template.AbstractCompoundSet.java
org.biojava3.core.sequence.template.AbstractCompoundTranslator.java
org.biojava3.core.sequence.template.AbstractNucleotideCompoundSet.java
org.biojava3.core.sequence.template.AbstractSequence.java
org.biojava3.core.sequence.template.Accessioned.java
org.biojava3.core.sequence.template.ComplementCompound.java
org.biojava3.core.sequence.template.Compound.java
org.biojava3.core.sequence.template.CompoundSet.java
org.biojava3.core.sequence.template.CompoundTranslator.java
org.biojava3.core.sequence.template.LightweightProfile.java
org.biojava3.core.sequence.template.ProxySequenceReader.java
org.biojava3.core.sequence.template.Sequence.java
org.biojava3.core.sequence.template.SequenceMixin.java
org.biojava3.core.sequence.template.SequenceProxyView.java
org.biojava3.core.sequence.template.SequenceReader.java
org.biojava3.core.sequence.template.SequenceView.java
org.biojava3.core.sequence.transcription.CaseInsensitiveCompound.java
org.biojava3.core.sequence.transcription.DNAToRNATranslator.java
org.biojava3.core.sequence.transcription.Frame.java
org.biojava3.core.sequence.transcription.RNAToAminoAcidTranslator.java
org.biojava3.core.sequence.transcription.Table.java
org.biojava3.core.sequence.transcription.TranscriptionEngine.java
org.biojava3.core.sequence.views.ComplementSequenceView.java
org.biojava3.core.sequence.views.ReversedSequenceView.java
org.biojava3.core.sequence.views.RnaSequenceView.java
org.biojava3.core.sequence.views.WindowedSequence.java
org.biojava3.core.util.CRC64Checksum.java
org.biojava3.core.util.ConcurrencyTools.java
org.biojava3.core.util.Equals.java
org.biojava3.core.util.FlatFileCache.java
org.biojava3.core.util.Hashcoder.java
org.biojava3.core.util.InputStreamProvider.java
org.biojava3.core.util.PrettyXMLWriter.java
org.biojava3.core.util.SequenceTools.java
org.biojava3.core.util.SoftHashMap.java
org.biojava3.core.util.UncompressInputStream.java
org.biojava3.core.util.XMLHelper.java
org.biojava3.core.util.XMLWriter.java
org/biojava3/core/sequence/iupac.txt
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