You can download picard-1.102.0.jar in this page.
Apache 2
picard-1.102.0.jar file has the following types.
META-INF/MANIFEST.MF net.sf.picard.PicardException.class net.sf.picard.Test.class net.sf.picard.analysis.AlignmentSummaryMetrics.class net.sf.picard.analysis.AlignmentSummaryMetricsCollector.class net.sf.picard.analysis.CollectAlignmentSummaryMetrics.class net.sf.picard.analysis.CollectGcBiasMetrics.class net.sf.picard.analysis.CollectInsertSizeMetrics.class net.sf.picard.analysis.CollectMultipleMetrics.class net.sf.picard.analysis.CollectRnaSeqMetrics.class net.sf.picard.analysis.GcBiasDetailMetrics.class net.sf.picard.analysis.GcBiasSummaryMetrics.class net.sf.picard.analysis.InsertSizeMetrics.class net.sf.picard.analysis.MeanQualityByCycle.class net.sf.picard.analysis.MetricAccumulationLevel.class net.sf.picard.analysis.QualityScoreDistribution.class net.sf.picard.analysis.RnaSeqMetrics.class net.sf.picard.analysis.SinglePassSamProgram.class net.sf.picard.analysis.directed.CalculateHsMetrics.class net.sf.picard.analysis.directed.CollectTargetedMetrics.class net.sf.picard.analysis.directed.CollectTargetedPcrMetrics.class net.sf.picard.analysis.directed.HsMetricCollector.class net.sf.picard.analysis.directed.HsMetrics.class net.sf.picard.analysis.directed.InsertSizeCollectorArgs.class net.sf.picard.analysis.directed.InsertSizeMetricsCollector.class net.sf.picard.analysis.directed.RnaSeqMetricsCollector.class net.sf.picard.analysis.directed.TargetMetrics.class net.sf.picard.analysis.directed.TargetMetricsCollector.class net.sf.picard.analysis.directed.TargetedPcrMetrics.class net.sf.picard.analysis.directed.TargetedPcrMetricsCollector.class net.sf.picard.annotation.AnnotationException.class net.sf.picard.annotation.Gene.class net.sf.picard.annotation.GeneAnnotationReader.class net.sf.picard.annotation.LocusFunction.class net.sf.picard.annotation.RefFlatReader.class net.sf.picard.cmdline.CommandLineParseException.class net.sf.picard.cmdline.CommandLineParser.class net.sf.picard.cmdline.CommandLineParserDefinitionException.class net.sf.picard.cmdline.CommandLineProgram.class net.sf.picard.cmdline.CreateHtmlDocForProgram.class net.sf.picard.cmdline.CreateHtmlDocForStandardOptions.class net.sf.picard.cmdline.NestedOptions.class net.sf.picard.cmdline.Option.class net.sf.picard.cmdline.PositionalArguments.class net.sf.picard.cmdline.StandardOptionDefinitions.class net.sf.picard.cmdline.Usage.class net.sf.picard.fastq.AsyncFastqWriter.class net.sf.picard.fastq.BamToBfq.class net.sf.picard.fastq.BamToBfqWriter.class net.sf.picard.fastq.BasicFastqWriter.class net.sf.picard.fastq.Casava18ReadNameEncoder.class net.sf.picard.fastq.FastqConstants.class net.sf.picard.fastq.FastqReader.class net.sf.picard.fastq.FastqRecord.class net.sf.picard.fastq.FastqWriter.class net.sf.picard.fastq.FastqWriterFactory.class net.sf.picard.fastq.IlluminaReadNameEncoder.class net.sf.picard.fastq.ReadNameEncoder.class net.sf.picard.filter.AggregateFilter.class net.sf.picard.filter.AlignedFilter.class net.sf.picard.filter.DuplicateReadFilter.class net.sf.picard.filter.FailsVendorReadQualityFilter.class net.sf.picard.filter.FilteringIterator.class net.sf.picard.filter.IntervalFilter.class net.sf.picard.filter.NotPrimaryAlignmentFilter.class net.sf.picard.filter.ReadNameFilter.class net.sf.picard.filter.SamRecordFilter.class net.sf.picard.filter.SecondaryOrSupplementaryFilter.class net.sf.picard.filter.SolexaNoiseFilter.class net.sf.picard.filter.TagFilter.class net.sf.picard.filter.WholeReadClippedFilter.class net.sf.picard.illumina.CheckIlluminaDirectory.class net.sf.picard.illumina.ClusterDataToSamConverter.class net.sf.picard.illumina.ExtractIlluminaBarcodes.class net.sf.picard.illumina.IlluminaBasecallsConverter.class net.sf.picard.illumina.IlluminaBasecallsToFastq.class net.sf.picard.illumina.IlluminaBasecallsToSam.class net.sf.picard.illumina.MarkIlluminaAdapters.class net.sf.picard.illumina.parser.BarcodeData.class net.sf.picard.illumina.parser.BarcodeParser.class net.sf.picard.illumina.parser.BaseData.class net.sf.picard.illumina.parser.BclData.class net.sf.picard.illumina.parser.BclParser.class net.sf.picard.illumina.parser.CifParser.class net.sf.picard.illumina.parser.ClusterData.class net.sf.picard.illumina.parser.ClusterIntensityFileReader.class net.sf.picard.illumina.parser.CnfParser.class net.sf.picard.illumina.parser.CycleFilesIterator.class net.sf.picard.illumina.parser.CycleIlluminaFileMap.class net.sf.picard.illumina.parser.FilterParser.class net.sf.picard.illumina.parser.FourChannelIntensityData.class net.sf.picard.illumina.parser.IlluminaData.class net.sf.picard.illumina.parser.IlluminaDataProvider.class net.sf.picard.illumina.parser.IlluminaDataProviderFactory.class net.sf.picard.illumina.parser.IlluminaDataType.class net.sf.picard.illumina.parser.IlluminaFileMap.class net.sf.picard.illumina.parser.IlluminaFileNotFoundException.class net.sf.picard.illumina.parser.IlluminaFileUtil.class net.sf.picard.illumina.parser.IlluminaIntensityParser.class net.sf.picard.illumina.parser.IlluminaParser.class net.sf.picard.illumina.parser.IlluminaTextIterator.class net.sf.picard.illumina.parser.IntensityChannel.class net.sf.picard.illumina.parser.NoiseData.class net.sf.picard.illumina.parser.OutputMapping.class net.sf.picard.illumina.parser.PerTileParser.class net.sf.picard.illumina.parser.PerTilePerCycleParser.class net.sf.picard.illumina.parser.PfData.class net.sf.picard.illumina.parser.PosParser.class net.sf.picard.illumina.parser.PositionalData.class net.sf.picard.illumina.parser.QseqParser.class net.sf.picard.illumina.parser.QseqReadData.class net.sf.picard.illumina.parser.QseqReadParser.class net.sf.picard.illumina.parser.QualityData.class net.sf.picard.illumina.parser.Range.class net.sf.picard.illumina.parser.RawIntensityData.class net.sf.picard.illumina.parser.ReadData.class net.sf.picard.illumina.parser.ReadDescriptor.class net.sf.picard.illumina.parser.ReadStructure.class net.sf.picard.illumina.parser.ReadType.class net.sf.picard.illumina.parser.TileMetricsUtil.class net.sf.picard.illumina.parser.readers.AbstractIlluminaPositionFileReader.class net.sf.picard.illumina.parser.readers.BarcodeFileReader.class net.sf.picard.illumina.parser.readers.BclQualityEvaluationStrategy.class net.sf.picard.illumina.parser.readers.BclReader.class net.sf.picard.illumina.parser.readers.BinaryFileIterator.class net.sf.picard.illumina.parser.readers.ClocsFileReader.class net.sf.picard.illumina.parser.readers.FilterFileReader.class net.sf.picard.illumina.parser.readers.LocsFileReader.class net.sf.picard.illumina.parser.readers.MMapBackedIteratorFactory.class net.sf.picard.illumina.parser.readers.PosFileReader.class net.sf.picard.illumina.parser.readers.TileMetricsOutReader.class net.sf.picard.io.CustomGzipOutputStream.class net.sf.picard.io.FastLineReader.class net.sf.picard.io.IoUtil.class net.sf.picard.liftover.Chain.class net.sf.picard.liftover.LiftOver.class net.sf.picard.metrics.Header.class net.sf.picard.metrics.MetricBase.class net.sf.picard.metrics.MetricsFile.class net.sf.picard.metrics.MultiLevelCollector.class net.sf.picard.metrics.MultilevelMetrics.class net.sf.picard.metrics.PerUnitMetricCollector.class net.sf.picard.metrics.SAMRecordAndReference.class net.sf.picard.metrics.SAMRecordAndReferenceMultiLevelCollector.class net.sf.picard.metrics.SAMRecordMultiLevelCollector.class net.sf.picard.metrics.StringHeader.class net.sf.picard.metrics.VersionHeader.class net.sf.picard.pedigree.PedFile.class net.sf.picard.pedigree.PedTrio.class net.sf.picard.pedigree.Sex.class net.sf.picard.reference.AbstractFastaSequenceFile.class net.sf.picard.reference.ExtractSequences.class net.sf.picard.reference.FastaSequenceFile.class net.sf.picard.reference.FastaSequenceIndex.class net.sf.picard.reference.FastaSequenceIndexEntry.class net.sf.picard.reference.IndexedFastaSequenceFile.class net.sf.picard.reference.NormalizeFasta.class net.sf.picard.reference.ReferenceSequence.class net.sf.picard.reference.ReferenceSequenceFile.class net.sf.picard.reference.ReferenceSequenceFileFactory.class net.sf.picard.reference.ReferenceSequenceFileWalker.class net.sf.picard.sam.AbstractAlignmentMerger.class net.sf.picard.sam.AbstractDuplicateFindingAlgorithm.class net.sf.picard.sam.AddOrReplaceReadGroups.class net.sf.picard.sam.BamIndexStats.class net.sf.picard.sam.BestEndMapqPrimaryAlignmentStrategy.class net.sf.picard.sam.BestMapqPrimaryAlignmentSelectionStrategy.class net.sf.picard.sam.BuildBamIndex.class net.sf.picard.sam.CleanSam.class net.sf.picard.sam.ComparableSamRecordIterator.class net.sf.picard.sam.CompareSAMs.class net.sf.picard.sam.CoordinateSortedPairInfoMap.class net.sf.picard.sam.CreateSequenceDictionary.class net.sf.picard.sam.DiskReadEndsMap.class net.sf.picard.sam.DownsampleSam.class net.sf.picard.sam.DuplicationMetrics.class net.sf.picard.sam.EarliestFragmentPrimaryAlignmentSelectionStrategy.class net.sf.picard.sam.EstimateLibraryComplexity.class net.sf.picard.sam.FastqToSam.class net.sf.picard.sam.FilterSamReads.class net.sf.picard.sam.FixMateInformation.class net.sf.picard.sam.HitsForInsert.class net.sf.picard.sam.MarkDuplicates.class net.sf.picard.sam.MergeBamAlignment.class net.sf.picard.sam.MergeSamFiles.class net.sf.picard.sam.MergingSamRecordIterator.class net.sf.picard.sam.MostDistantPrimaryAlignmentSelectionStrategy.class net.sf.picard.sam.MultiHitAlignedReadIterator.class net.sf.picard.sam.PrimaryAlignmentSelectionStrategy.class net.sf.picard.sam.RAMReadEndsMap.class net.sf.picard.sam.ReadEnds.class net.sf.picard.sam.ReadEndsCodec.class net.sf.picard.sam.ReadEndsMap.class net.sf.picard.sam.ReorderSam.class net.sf.picard.sam.ReplaceSamHeader.class net.sf.picard.sam.ReservedTagConstants.class net.sf.picard.sam.RevertSam.class net.sf.picard.sam.SamAlignmentMerger.class net.sf.picard.sam.SamFileHeaderMerger.class net.sf.picard.sam.SamFileValidator.class net.sf.picard.sam.SamFormatConverter.class net.sf.picard.sam.SamPairUtil.class net.sf.picard.sam.SamToFastq.class net.sf.picard.sam.SortSam.class net.sf.picard.sam.ValidateSamFile.class net.sf.picard.sam.ViewSam.class net.sf.picard.util.AbstractInputParser.class net.sf.picard.util.AdapterPair.class net.sf.picard.util.AsyncIterator.class net.sf.picard.util.BasicInputParser.class net.sf.picard.util.CigarUtil.class net.sf.picard.util.ClippingUtility.class net.sf.picard.util.CsvInputParser.class net.sf.picard.util.DelimitedTextFileWithHeaderIterator.class net.sf.picard.util.FastqQualityFormat.class net.sf.picard.util.FileAppendStreamLRUCache.class net.sf.picard.util.FileChannelJDKBugWorkAround.class net.sf.picard.util.FormatUtil.class net.sf.picard.util.Histogram.class net.sf.picard.util.IlluminaUtil.class net.sf.picard.util.Interval.class net.sf.picard.util.IntervalCoordinateComparator.class net.sf.picard.util.IntervalList.class net.sf.picard.util.IntervalListReferenceSequenceMask.class net.sf.picard.util.IntervalListTools.class net.sf.picard.util.IntervalTree.class net.sf.picard.util.IntervalTreeMap.class net.sf.picard.util.IntervalUtil.class net.sf.picard.util.IterableAdapter.class net.sf.picard.util.IterableOnceIterator.class net.sf.picard.util.Locus.class net.sf.picard.util.LocusComparator.class net.sf.picard.util.LocusImpl.class net.sf.picard.util.Log.class net.sf.picard.util.MathUtil.class net.sf.picard.util.MergingIterator.class net.sf.picard.util.OverlapDetector.class net.sf.picard.util.PeekableIterator.class net.sf.picard.util.ProcessExecutor.class net.sf.picard.util.ProgressLogger.class net.sf.picard.util.QualityEncodingDetector.class net.sf.picard.util.QualityUtil.class net.sf.picard.util.RExecutor.class net.sf.picard.util.ReferenceSequenceMask.class net.sf.picard.util.ResourceLimitedMap.class net.sf.picard.util.ResourceLimitedMapFunctor.class net.sf.picard.util.SamLocusIterator.class net.sf.picard.util.SamRecordIntervalIterator.class net.sf.picard.util.SamRecordIntervalIteratorFactory.class net.sf.picard.util.SolexaQualityConverter.class net.sf.picard.util.TabbedInputParser.class net.sf.picard.util.TabbedTextFileWithHeaderParser.class net.sf.picard.util.UnsignedTypeUtil.class net.sf.picard.util.WholeGenomeReferenceSequenceMask.class net.sf.picard.vcf.MakeSitesOnlyVcf.class net.sf.picard.vcf.MergeVcfs.class net.sf.picard.vcf.SplitVcfs.class net.sf.picard.vcf.VcfFormatConverter.class net.sf.samtools.AbstractBAMFileIndex.class net.sf.samtools.AbstractSAMHeaderRecord.class net.sf.samtools.AlignmentBlock.class net.sf.samtools.AsyncSAMFileWriter.class net.sf.samtools.BAMFileConstants.class net.sf.samtools.BAMFileReader.class net.sf.samtools.BAMFileSpan.class net.sf.samtools.BAMFileWriter.class net.sf.samtools.BAMIndex.class net.sf.samtools.BAMIndexContent.class net.sf.samtools.BAMIndexMetaData.class net.sf.samtools.BAMIndexWriter.class net.sf.samtools.BAMIndexer.class net.sf.samtools.BAMRecord.class net.sf.samtools.BAMRecordCodec.class net.sf.samtools.BamIndexValidator.class net.sf.samtools.Bin.class net.sf.samtools.BinList.class net.sf.samtools.BinaryBAMIndexWriter.class net.sf.samtools.BinaryCigarCodec.class net.sf.samtools.BinaryTagCodec.class net.sf.samtools.BrowseableBAMIndex.class net.sf.samtools.CachingBAMFileIndex.class net.sf.samtools.Chunk.class net.sf.samtools.Cigar.class net.sf.samtools.CigarElement.class net.sf.samtools.CigarOperator.class net.sf.samtools.DefaultSAMRecordFactory.class net.sf.samtools.Defaults.class net.sf.samtools.DiskBasedBAMFileIndex.class net.sf.samtools.FileTruncatedException.class net.sf.samtools.FixBAMFile.class net.sf.samtools.LinearIndex.class net.sf.samtools.NotPrimarySkippingIterator.class net.sf.samtools.SAMBinaryTagAndUnsignedArrayValue.class net.sf.samtools.SAMBinaryTagAndValue.class net.sf.samtools.SAMException.class net.sf.samtools.SAMFileHeader.class net.sf.samtools.SAMFileReader.class net.sf.samtools.SAMFileSource.class net.sf.samtools.SAMFileSpan.class net.sf.samtools.SAMFileTruncatedReader.class net.sf.samtools.SAMFileWriter.class net.sf.samtools.SAMFileWriterFactory.class net.sf.samtools.SAMFileWriterImpl.class net.sf.samtools.SAMFormatException.class net.sf.samtools.SAMLineParser.class net.sf.samtools.SAMProgramRecord.class net.sf.samtools.SAMReadGroupRecord.class net.sf.samtools.SAMRecord.class net.sf.samtools.SAMRecordComparator.class net.sf.samtools.SAMRecordCoordinateComparator.class net.sf.samtools.SAMRecordFactory.class net.sf.samtools.SAMRecordIterator.class net.sf.samtools.SAMRecordQueryNameComparator.class net.sf.samtools.SAMRecordSetBuilder.class net.sf.samtools.SAMRecordUtil.class net.sf.samtools.SAMSequenceDictionary.class net.sf.samtools.SAMSequenceRecord.class net.sf.samtools.SAMSortOrderChecker.class net.sf.samtools.SAMTag.class net.sf.samtools.SAMTagUtil.class net.sf.samtools.SAMTestUtil.class net.sf.samtools.SAMTextHeaderCodec.class net.sf.samtools.SAMTextReader.class net.sf.samtools.SAMTextWriter.class net.sf.samtools.SAMTools.class net.sf.samtools.SAMUtils.class net.sf.samtools.SAMValidationError.class net.sf.samtools.SQTagUtil.class net.sf.samtools.SecondaryOrSupplementarySkippingIterator.class net.sf.samtools.TagValueAndUnsignedArrayFlag.class net.sf.samtools.TextCigarCodec.class net.sf.samtools.TextTagCodec.class net.sf.samtools.TextualBAMIndexWriter.class net.sf.samtools.apps.TimeChannel.class net.sf.samtools.apps.TimeRandomAccessFile.class net.sf.samtools.example.ExampleSamUsage.class net.sf.samtools.seekablestream.ISeekableStreamFactory.class net.sf.samtools.seekablestream.SeekableBufferedStream.class net.sf.samtools.seekablestream.SeekableFTPStream.class net.sf.samtools.seekablestream.SeekableFTPStreamHelper.class net.sf.samtools.seekablestream.SeekableFileStream.class net.sf.samtools.seekablestream.SeekableHTTPStream.class net.sf.samtools.seekablestream.SeekableStream.class net.sf.samtools.seekablestream.SeekableStreamFactory.class net.sf.samtools.seekablestream.UserPasswordInput.class net.sf.samtools.util.AbstractAsyncWriter.class net.sf.samtools.util.AbstractIterator.class net.sf.samtools.util.AsciiWriter.class net.sf.samtools.util.BinaryCodec.class net.sf.samtools.util.BlockCompressedFilePointerUtil.class net.sf.samtools.util.BlockCompressedInputStream.class net.sf.samtools.util.BlockCompressedOutputStream.class net.sf.samtools.util.BlockCompressedStreamConstants.class net.sf.samtools.util.BlockGunzipper.class net.sf.samtools.util.BufferedLineReader.class net.sf.samtools.util.CloseableIterator.class net.sf.samtools.util.CloserUtil.class net.sf.samtools.util.CollectionUtil.class net.sf.samtools.util.CoordMath.class net.sf.samtools.util.DateParser.class net.sf.samtools.util.DelegatingIterator.class net.sf.samtools.util.HttpUtils.class net.sf.samtools.util.IOUtil.class net.sf.samtools.util.Iso8601Date.class net.sf.samtools.util.LineReader.class net.sf.samtools.util.Md5CalculatingInputStream.class net.sf.samtools.util.Md5CalculatingOutputStream.class net.sf.samtools.util.PeekIterator.class net.sf.samtools.util.RelativeIso8601Date.class net.sf.samtools.util.RuntimeEOFException.class net.sf.samtools.util.RuntimeIOException.class net.sf.samtools.util.SequenceUtil.class net.sf.samtools.util.SnappyLoader.class net.sf.samtools.util.SortingCollection.class net.sf.samtools.util.SortingLongCollection.class net.sf.samtools.util.StopWatch.class net.sf.samtools.util.StringLineReader.class net.sf.samtools.util.StringUtil.class net.sf.samtools.util.TempStreamFactory.class net.sf.samtools.util.TestUtil.class net.sf.samtools.util.Tuple.class net.sf.samtools.util.ftp.FTPClient.class net.sf.samtools.util.ftp.FTPReply.class net.sf.samtools.util.ftp.FTPStream.class net.sf.samtools.util.ftp.FTPUtils.class org.broad.tribble.AbstractFeatureCodec.class org.broad.tribble.AbstractFeatureReader.class org.broad.tribble.AsciiFeatureCodec.class org.broad.tribble.BasicFeature.class org.broad.tribble.BinaryFeatureCodec.class org.broad.tribble.CloseableTribbleIterator.class org.broad.tribble.Feature.class org.broad.tribble.FeatureCodec.class org.broad.tribble.FeatureCodecHeader.class org.broad.tribble.FeatureReader.class org.broad.tribble.NameAwareCodec.class org.broad.tribble.TabixFeatureReader.class org.broad.tribble.Tribble.class org.broad.tribble.TribbleException.class org.broad.tribble.TribbleIndexedFeatureReader.class org.broad.tribble.annotation.Strand.class org.broad.tribble.bed.BEDCodec.class org.broad.tribble.bed.BEDFeature.class org.broad.tribble.bed.FullBEDFeature.class org.broad.tribble.bed.SimpleBEDFeature.class org.broad.tribble.dbsnp.OldDbSNPCodec.class org.broad.tribble.dbsnp.OldDbSNPFeature.class org.broad.tribble.example.CountRecords.class org.broad.tribble.example.ExampleBinaryCodec.class org.broad.tribble.example.IndexToTable.class org.broad.tribble.example.IndicesAreEqual.class org.broad.tribble.example.ProfileIndexReading.class org.broad.tribble.exception.CodecLineParsingException.class org.broad.tribble.exception.UnsortedFileException.class org.broad.tribble.gelitext.DiploidGenotype.class org.broad.tribble.gelitext.DiploidGenotypeException.class org.broad.tribble.gelitext.GeliTextCodec.class org.broad.tribble.gelitext.GeliTextFeature.class org.broad.tribble.index.AbstractIndex.class org.broad.tribble.index.Block.class org.broad.tribble.index.ChrIndex.class org.broad.tribble.index.DynamicIndexCreator.class org.broad.tribble.index.Index.class org.broad.tribble.index.IndexCreator.class org.broad.tribble.index.IndexFactory.class org.broad.tribble.index.interval.Interval.class org.broad.tribble.index.interval.IntervalIndexCreator.class org.broad.tribble.index.interval.IntervalTree.class org.broad.tribble.index.interval.IntervalTreeIndex.class org.broad.tribble.index.interval.MutableInterval.class org.broad.tribble.index.linear.LinearIndex.class org.broad.tribble.index.linear.LinearIndexCreator.class org.broad.tribble.readers.AsciiLineReader.class org.broad.tribble.readers.AsciiLineReaderIterator.class org.broad.tribble.readers.AsynchronousLineReader.class org.broad.tribble.readers.LineIterator.class org.broad.tribble.readers.LineIteratorImpl.class org.broad.tribble.readers.LineReader.class org.broad.tribble.readers.LineReaderUtil.class org.broad.tribble.readers.LocationAware.class org.broad.tribble.readers.LongLineBufferedReader.class org.broad.tribble.readers.Positional.class org.broad.tribble.readers.PositionalBufferedStream.class org.broad.tribble.readers.TabixIteratorLineReader.class org.broad.tribble.readers.TabixReader.class org.broad.tribble.util.FTPHelper.class org.broad.tribble.util.HTTPHelper.class org.broad.tribble.util.LittleEndianInputStream.class org.broad.tribble.util.LittleEndianOutputStream.class org.broad.tribble.util.MathUtils.class org.broad.tribble.util.ParsingUtils.class org.broad.tribble.util.RemoteURLHelper.class org.broad.tribble.util.TabixUtils.class org.broad.tribble.util.URLHelper.class org.broad.tribble.util.popgen.HardyWeinbergCalculation.class org.broadinstitute.variant.bcf2.BCF2Codec.class org.broadinstitute.variant.bcf2.BCF2Decoder.class org.broadinstitute.variant.bcf2.BCF2GenotypeFieldDecoders.class org.broadinstitute.variant.bcf2.BCF2LazyGenotypesDecoder.class org.broadinstitute.variant.bcf2.BCF2Type.class org.broadinstitute.variant.bcf2.BCF2Utils.class org.broadinstitute.variant.bcf2.BCFVersion.class org.broadinstitute.variant.utils.GeneralUtils.class org.broadinstitute.variant.variantcontext.Allele.class org.broadinstitute.variant.variantcontext.CommonInfo.class org.broadinstitute.variant.variantcontext.FastGenotype.class org.broadinstitute.variant.variantcontext.Genotype.class org.broadinstitute.variant.variantcontext.GenotypeBuilder.class org.broadinstitute.variant.variantcontext.GenotypeLikelihoods.class org.broadinstitute.variant.variantcontext.GenotypeType.class org.broadinstitute.variant.variantcontext.GenotypesContext.class org.broadinstitute.variant.variantcontext.JEXLMap.class org.broadinstitute.variant.variantcontext.LazyGenotypesContext.class org.broadinstitute.variant.variantcontext.VariantContext.class org.broadinstitute.variant.variantcontext.VariantContextBuilder.class org.broadinstitute.variant.variantcontext.VariantContextComparator.class org.broadinstitute.variant.variantcontext.VariantContextUtils.class org.broadinstitute.variant.variantcontext.VariantJEXLContext.class org.broadinstitute.variant.variantcontext.writer.BCF2Encoder.class org.broadinstitute.variant.variantcontext.writer.BCF2FieldEncoder.class org.broadinstitute.variant.variantcontext.writer.BCF2FieldWriter.class org.broadinstitute.variant.variantcontext.writer.BCF2FieldWriterManager.class org.broadinstitute.variant.variantcontext.writer.BCF2Writer.class org.broadinstitute.variant.variantcontext.writer.IndexingVariantContextWriter.class org.broadinstitute.variant.variantcontext.writer.IntGenotypeFieldAccessors.class org.broadinstitute.variant.variantcontext.writer.Options.class org.broadinstitute.variant.variantcontext.writer.PositionalOutputStream.class org.broadinstitute.variant.variantcontext.writer.SortingVariantContextWriter.class org.broadinstitute.variant.variantcontext.writer.SortingVariantContextWriterBase.class org.broadinstitute.variant.variantcontext.writer.VCFWriter.class org.broadinstitute.variant.variantcontext.writer.VariantContextWriter.class org.broadinstitute.variant.variantcontext.writer.VariantContextWriterFactory.class org.broadinstitute.variant.vcf.AbstractVCFCodec.class org.broadinstitute.variant.vcf.VCF3Codec.class org.broadinstitute.variant.vcf.VCF3Parser.class org.broadinstitute.variant.vcf.VCF4Parser.class org.broadinstitute.variant.vcf.VCFCodec.class org.broadinstitute.variant.vcf.VCFCompoundHeaderLine.class org.broadinstitute.variant.vcf.VCFConstants.class org.broadinstitute.variant.vcf.VCFContigHeaderLine.class org.broadinstitute.variant.vcf.VCFEncoder.class org.broadinstitute.variant.vcf.VCFFileReader.class org.broadinstitute.variant.vcf.VCFFilterHeaderLine.class org.broadinstitute.variant.vcf.VCFFormatHeaderLine.class org.broadinstitute.variant.vcf.VCFHeader.class org.broadinstitute.variant.vcf.VCFHeaderLine.class org.broadinstitute.variant.vcf.VCFHeaderLineCount.class org.broadinstitute.variant.vcf.VCFHeaderLineTranslator.class org.broadinstitute.variant.vcf.VCFHeaderLineType.class org.broadinstitute.variant.vcf.VCFHeaderVersion.class org.broadinstitute.variant.vcf.VCFIDHeaderLine.class org.broadinstitute.variant.vcf.VCFInfoHeaderLine.class org.broadinstitute.variant.vcf.VCFLineParser.class org.broadinstitute.variant.vcf.VCFRecordCodec.class org.broadinstitute.variant.vcf.VCFSimpleHeaderLine.class org.broadinstitute.variant.vcf.VCFStandardHeaderLines.class org.broadinstitute.variant.vcf.VCFUtils.class
picard-1.102.0.pom file content.
<?xml version='1.0' encoding='UTF-8'?>
<project xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://maven.apache.org/POM/4.0.0">
<modelVersion>4.0.0</modelVersion>
<groupId>org.utgenome.thirdparty</groupId>
<artifactId>picard</artifactId>
<packaging>jar</packaging>
<description>Picard library for manipulating SAM/BAM format data</description>
<version>1.102.0</version>
<name>picard</name>
<organization>
<name>utgenome.org</name>
<url>http://utgenome.org/</url>
</organization>
<url>http://utgenome.org/</url>
<licenses>
<license>
<name>Apache 2</name>
<url>http://www.apache.org/licenses/LICENSE-2.0.txt</url>
</license>
</licenses>
<scm>
<connection>scm:git:github.com/utgenome/picard.git</connection>
<developerConnection>scm:git:git@github.com:utgenome/picard.git</developerConnection>
<url>github.com/utgenome/picard.git</url>
</scm>
<properties>
<scala.version> 2.10.0 </scala.version>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
</properties>
<developers>
<developer>
<id>leo</id>
<name>Taro L. Saito</name>
<url>http://xerial.org/leo</url>
</developer>
</developers>
<dependencies>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.10</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.apache.ant</groupId>
<artifactId>ant</artifactId>
<version>1.8.4</version>
</dependency>
<dependency>
<groupId>org.xerial.snappy</groupId>
<artifactId>snappy-java</artifactId>
<version>1.1.0</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-jexl</artifactId>
<version>2.1.1</version>
</dependency>
<dependency>
<groupId>commons-logging</groupId>
<artifactId>commons-logging</artifactId>
<version>1.1.1</version>
</dependency>
<dependency>
<groupId>org.apache.ant</groupId>
<artifactId>ant-apache-bcel</artifactId>
<version>1.8.4</version>
</dependency>
</dependencies>
</project>
<dependency> <groupId>org.utgenome.thirdparty</groupId> <artifactId>picard</artifactId> <version>1.102.0</version> </dependency>
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