Java String Capitalize capitaliseAndCheckBases(byte[] bases, boolean strict)

Description

capitalise And Check Bases

License

Apache License

Declaration

public static void capitaliseAndCheckBases(byte[] bases, boolean strict) 

Method Source Code

//package com.java2s;
/*******************************************************************************
 * Copyright 2013 EMBL-EBI//from  w  w w.j  a v  a 2 s  . c o m
 * 
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 * 
 *   http://www.apache.org/licenses/LICENSE-2.0
 * 
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 ******************************************************************************/

public class Main {
    public static void capitaliseAndCheckBases(byte[] bases, boolean strict) {
        for (int i = 0; i < bases.length; i++) {
            switch (bases[i]) {
            case 'A':
            case 'C':
            case 'G':
            case 'T':
            case 'N':
                break;
            case 'a':
                bases[i] = 'A';
                break;
            case 'c':
                bases[i] = 'C';
                break;
            case 'g':
                bases[i] = 'G';
                break;
            case 't':
                bases[i] = 'T';
                break;
            case 'n':
                bases[i] = 'N';
                break;

            default:
                if (strict)
                    throw new RuntimeException("Illegal base at " + i + ": " + bases[i]);
                else
                    bases[i] = 'N';
                break;
            }
        }
    }
}

Related

1. capitalise(String str)
2. capitalise(String string)
3. capitalise(String string)
4. capitalise(String string)
5. capitalise(String toCapitalise)
6. capitalised(String name)
7. capitaliseName(String name)
8. capitalizar(String s)
9. capitalizarPalabra(String palabra)