Java FileWriter Write saveSeqAln(String[] alnSequences, String filePath)

Description

Save a multiple sequence alignment result as a fasta file.

License

GNU General Public License

Declaration

public static void saveSeqAln(String[] alnSequences, String filePath) throws IOException 

Method Source Code

//package com.java2s;
/**/*ww w  .  ja  va2s .  c  om*/
 *                    BioJava development code
 *
 * This code may be freely distributed and modified under the
 * terms of the GNU Lesser General Public Licence.  This should
 * be distributed with the code.  If you do not have a copy,
 * see:
 *
 *      http://www.gnu.org/copyleft/lesser.html
 *
 * Copyright for this code is held jointly by the individual
 * authors.  These should be listed in @author doc comments.
 *
 * For more information on the BioJava project and its aims,
 * or to join the biojava-l mailing list, visit the home page
 * at:
 *
 *      http://www.biojava.org/
 *
 * Created on Oct 5, 2011
 * Created by Andreas Prlic
 *
 * @since 3.0.2
 */

import java.io.FileWriter;
import java.io.IOException;

public class Main {
    /**
     *  Save a multiple sequence alignment result as a fasta file.
     */
    public static void saveSeqAln(String[] alnSequences, String filePath) throws IOException {

        FileWriter writer = new FileWriter(filePath);

        for (int su = 0; su < alnSequences.length; su++) {
            writer.append(">Subunit_" + (su + 1) + "\n");
            writer.append(alnSequences[su] + "\n");
        }

        writer.flush();
        writer.close();
    }
}

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3. saveMetadata(Map metadata, File file)
4. saveModelInFile(final String model, final String filename)
5. savePValue2File(double[] pValue, String fileName)
6. saveSimpleTextFile(String data, String path, String filename)
7. saveStats(String filename, String log)
8. saveString(File filename, String content)
9. saveString(String filePath, String content)