weka.attributeSelection.ASEvaluation.java Source code

Java tutorial

Introduction

Here is the source code for weka.attributeSelection.ASEvaluation.java

Source

/*
 *   This program is free software: you can redistribute it and/or modify
 *   it under the terms of the GNU General Public License as published by
 *   the Free Software Foundation, either version 3 of the License, or
 *   (at your option) any later version.
 *
 *   This program is distributed in the hope that it will be useful,
 *   but WITHOUT ANY WARRANTY; without even the implied warranty of
 *   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *   GNU General Public License for more details.
 *
 *   You should have received a copy of the GNU General Public License
 *   along with this program.  If not, see <http://www.gnu.org/licenses/>.
 */

/*
 *    ASEvaluation.java
 *    Copyright (C) 1999-2012 University of Waikato, Hamilton, New Zealand
 *
 */

package weka.attributeSelection;

import weka.core.Capabilities;
import weka.core.CapabilitiesHandler;
import weka.core.CapabilitiesIgnorer;
import weka.core.CommandlineRunnable;
import weka.core.Instances;
import weka.core.RevisionHandler;
import weka.core.RevisionUtils;
import weka.core.SerializedObject;
import weka.core.Utils;

import java.io.Serializable;

/**
 * Abstract attribute selection evaluation class
 * 
 * @author Mark Hall (mhall@cs.waikato.ac.nz)
 * @version $Revision$
 */
public abstract class ASEvaluation
        implements Serializable, CapabilitiesHandler, CapabilitiesIgnorer, RevisionHandler, CommandlineRunnable {

    /** for serialization */
    private static final long serialVersionUID = 2091705669885950849L;

    /** Whether capabilities should not be checked */
    protected boolean m_DoNotCheckCapabilities = false;

    /**
     * Returns the tip text for this property
     * 
     * @return tip text for this property suitable for displaying in the
     *         explorer/experimenter gui
     */
    public String doNotCheckCapabilitiesTipText() {
        return "If set, evaluator capabilities are not checked before evaluator is built"
                + " (Use with caution to reduce runtime).";
    }

    /**
     * Set whether not to check capabilities.
     * 
     * @param doNotCheckCapabilities true if capabilities are not to be checked.
     */
    @Override
    public void setDoNotCheckCapabilities(boolean doNotCheckCapabilities) {

        m_DoNotCheckCapabilities = doNotCheckCapabilities;
    }

    /**
     * Get whether capabilities checking is turned off.
     * 
     * @return true if capabilities checking is turned off.
     */
    @Override
    public boolean getDoNotCheckCapabilities() {

        return m_DoNotCheckCapabilities;
    }

    // ===============
    // Public methods.
    // ===============

    /**
     * Generates a attribute evaluator. Has to initialize all fields of the
     * evaluator that are not being set via options.
     * 
     * @param data set of instances serving as training data
     * @exception Exception if the evaluator has not been generated successfully
     */
    public abstract void buildEvaluator(Instances data) throws Exception;

    /**
     * Provides a chance for a attribute evaluator to do any special post
     * processing of the selected attribute set. Can also be used to clean up any
     * data structures post attribute selection.
     * 
     * @param attributeSet the set of attributes found by the search
     * @return a possibly ranked list of postprocessed attributes
     * @exception Exception if postprocessing fails for some reason
     */
    public int[] postProcess(int[] attributeSet) throws Exception {
        return attributeSet;
    }

    /**
     * Creates a new instance of an attribute/subset evaluator given it's class
     * name and (optional) arguments to pass to it's setOptions method. If the
     * evaluator implements OptionHandler and the options parameter is non-null,
     * the evaluator will have it's options set.
     * 
     * @param evaluatorName the fully qualified class name of the evaluator
     * @param options an array of options suitable for passing to setOptions. May
     *          be null.
     * @return the newly created evaluator, ready for use.
     * @exception Exception if the evaluator name is invalid, or the options
     *              supplied are not acceptable to the evaluator
     */
    public static ASEvaluation forName(String evaluatorName, String[] options) throws Exception {
        return (ASEvaluation) Utils.forName(ASEvaluation.class, evaluatorName, options);
    }

    /**
     * Creates copies of the current evaluator. Note that this method now uses
     * Serialization to perform a deep copy, so the evaluator object must be fully
     * Serializable. Any currently built model will now be copied as well.
     * 
     * @param model an example evaluator to copy
     * @param num the number of evaluator copies to create.
     * @return an array of evaluators.
     * @exception Exception if an error occurs
     */
    public static ASEvaluation[] makeCopies(ASEvaluation model, int num) throws Exception {

        if (model == null) {
            throw new Exception("No model evaluator set");
        }
        ASEvaluation[] evaluators = new ASEvaluation[num];
        SerializedObject so = new SerializedObject(model);
        for (int i = 0; i < evaluators.length; i++) {
            evaluators[i] = (ASEvaluation) so.getObject();
        }
        return evaluators;
    }

    /**
     * Returns the capabilities of this evaluator.
     * 
     * @return the capabilities of this evaluator
     * @see Capabilities
     */
    @Override
    public Capabilities getCapabilities() {
        Capabilities result = new Capabilities(this);
        result.enableAll();

        return result;
    }

    /**
     * Returns the revision string.
     * 
     * @return the revision
     */
    @Override
    public String getRevision() {
        return RevisionUtils.extract("$Revision$");
    }

    /**
     * Tells the evaluator that the attribute selection process is complete. It
     * can then clean up data structures, references to training data as necessary
     * in order to save memory
     */
    public void clean() {
        // subclasses to override
    }

    /**
     * runs the evaluator with the given commandline options
     * 
     * @param evaluator the evaluator to run
     * @param options the commandline options
     */
    public static void runEvaluator(ASEvaluation evaluator, String[] options) {
        try {
            evaluator.preExecution();
            System.out.println(AttributeSelection.SelectAttributes(evaluator, options));
        } catch (Exception e) {
            String msg = e.toString().toLowerCase();
            if ((msg.indexOf("help requested") == -1) && (msg.indexOf("no training file given") == -1)) {
                e.printStackTrace();
            }
            System.err.println(e.getMessage());
        }

        try {
            evaluator.postExecution();
        } catch (Exception ex) {
            ex.printStackTrace();
        }
    }

    /**
     * Perform any setup stuff that might need to happen before commandline
     * execution. Subclasses should override if they need to do something here
     *
     * @throws Exception if a problem occurs during setup
     */
    @Override
    public void preExecution() throws Exception {
    }

    /**
     * Execute the supplied object. Subclasses need to override this method.
     *
     * @param toRun the object to execute
     * @param options any options to pass to the object
     * @throws Exception if a problem occurs
     */
    @Override
    public void run(Object toRun, String[] options) throws Exception {
        if (!(toRun instanceof ASEvaluation)) {
            throw new IllegalArgumentException("Object to run is not an instance of ASEValuation!");
        }

        preExecution();
        runEvaluator((ASEvaluation) toRun, options);
        postExecution();
    }

    /**
     * Perform any teardown stuff that might need to happen after execution.
     * Subclasses should override if they need to do something here
     *
     * @throws Exception if a problem occurs during teardown
     */
    @Override
    public void postExecution() throws Exception {
    }
}