Java tutorial
/* * To change this license header, choose License Headers in Project Properties. * To change this template file, choose Tools | Templates * and open the template in the editor. */ package view; import util.Internal; import java.io.File; import javax.swing.JFileChooser; import javax.swing.filechooser.FileNameExtensionFilter; import org.apache.commons.io.FilenameUtils; /** * * @author maverick */ public class ViewFiltrar extends javax.swing.JInternalFrame { /** * Creates new form ViewFiltrar */ FileNameExtensionFilter filter = new FileNameExtensionFilter("FASTA files", "fastq", "fasta", "sff"); int resultado; public ViewFiltrar() { initComponents(); Internal.retiraBotao(this); } /** * This method is called from within the constructor to initialize the form. * WARNING: Do NOT modify this code. The content of this method is always * regenerated by the Form Editor. */ @SuppressWarnings("unchecked") // <editor-fold defaultstate="collapsed" desc="Generated Code">//GEN-BEGIN:initComponents private void initComponents() { jTabbedPane4 = new javax.swing.JTabbedPane(); jPanel1 = new javax.swing.JPanel(); jLabel1 = new javax.swing.JLabel(); jTextField1 = new javax.swing.JTextField(); jLabel3 = new javax.swing.JLabel(); jTextField2 = new javax.swing.JTextField(); jLabel4 = new javax.swing.JLabel(); jButton2 = new javax.swing.JButton(); jLabel6 = new javax.swing.JLabel(); jTextFieldOutputFile = new javax.swing.JTextField(); jLabel7 = new javax.swing.JLabel(); jButton3 = new javax.swing.JButton(); jTextFieldInputFile = new javax.swing.JTextField(); jTextFieldOutputDirectory = new javax.swing.JTextField(); jButton1 = new javax.swing.JButton(); jPanel2 = new javax.swing.JPanel(); jLabel2 = new javax.swing.JLabel(); jLabel5 = new javax.swing.JLabel(); jLabel8 = new javax.swing.JLabel(); jLabel9 = new javax.swing.JLabel(); jLabel10 = new javax.swing.JLabel(); jButton4 = new javax.swing.JButton(); jTextField4 = new javax.swing.JTextField(); jButton5 = new javax.swing.JButton(); jButton6 = new javax.swing.JButton(); jTextField5 = new javax.swing.JTextField(); jTextField6 = new javax.swing.JTextField(); jTextFieldInputFileFiltragem = new javax.swing.JTextField(); jTextFieldOutputDiretorioFiltragem = new javax.swing.JTextField(); jPanel1.setBorder(javax.swing.BorderFactory.createTitledBorder(null, "Fastq_quality_trimmer", javax.swing.border.TitledBorder.CENTER, javax.swing.border.TitledBorder.DEFAULT_POSITION)); jLabel1.setText("Quality threshold:"); jLabel3.setText("Minimum length:"); jLabel4.setText("FASTQ input file:"); jButton2.setIcon(new javax.swing.ImageIcon(getClass().getResource("/img/inputfile15x15-2.png"))); // NOI18N jButton2.addActionListener(new java.awt.event.ActionListener() { public void actionPerformed(java.awt.event.ActionEvent evt) { jButton2ActionPerformed(evt); } }); jLabel6.setText("FASTQ output file:"); jLabel7.setText("Output directory: "); jButton3.setIcon(new javax.swing.ImageIcon(getClass().getResource("/img/pasta15x15.png"))); // NOI18N jButton3.addActionListener(new java.awt.event.ActionListener() { public void actionPerformed(java.awt.event.ActionEvent evt) { jButton3ActionPerformed(evt); } }); jButton1.setText("Processar"); javax.swing.GroupLayout jPanel1Layout = new javax.swing.GroupLayout(jPanel1); jPanel1.setLayout(jPanel1Layout); jPanel1Layout.setHorizontalGroup(jPanel1Layout .createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING) .addGroup(jPanel1Layout.createSequentialGroup().addContainerGap() .addGroup(jPanel1Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING) .addComponent(jLabel1).addComponent(jLabel3).addComponent(jLabel6) .addComponent(jLabel4).addComponent(jLabel7)) .addGap(18, 18, 18) .addGroup(jPanel1Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING) .addComponent(jTextField1).addComponent(jTextField2) .addComponent(jTextFieldInputFile, javax.swing.GroupLayout.DEFAULT_SIZE, 230, Short.MAX_VALUE) .addComponent(jTextFieldOutputFile).addComponent(jTextFieldOutputDirectory)) .addGap(31, 31, 31) .addGroup(jPanel1Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.TRAILING) .addComponent(jButton2).addComponent(jButton3)) .addContainerGap(457, Short.MAX_VALUE)) .addGroup(javax.swing.GroupLayout.Alignment.TRAILING, jPanel1Layout.createSequentialGroup() .addGap(0, 0, Short.MAX_VALUE).addComponent(jButton1))); jPanel1Layout.setVerticalGroup(jPanel1Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING) .addGroup(jPanel1Layout.createSequentialGroup().addContainerGap().addGroup(jPanel1Layout .createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE).addComponent(jLabel1) .addComponent(jTextField1, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)) .addGap(18, 18, 18) .addGroup(jPanel1Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE) .addComponent(jLabel3).addComponent(jTextField2, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)) .addGap(26, 26, 26) .addGroup(jPanel1Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING) .addComponent(jButton2, javax.swing.GroupLayout.Alignment.TRAILING) .addGroup(jPanel1Layout .createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE) .addComponent(jLabel4).addComponent(jTextFieldInputFile, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))) .addGap(22, 22, 22) .addGroup(jPanel1Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE) .addComponent(jLabel6).addComponent(jTextFieldOutputFile, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)) .addGap(18, 18, 18) .addGroup(jPanel1Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING) .addGroup(jPanel1Layout .createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE) .addComponent(jLabel7).addComponent(jTextFieldOutputDirectory, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)) .addComponent(jButton3)) .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED, 193, Short.MAX_VALUE) .addComponent(jButton1))); jTabbedPane4.addTab("Trimmagem", jPanel1); jPanel2.setBorder(javax.swing.BorderFactory.createTitledBorder(null, "Fastq_quality_filter", javax.swing.border.TitledBorder.CENTER, javax.swing.border.TitledBorder.DEFAULT_POSITION)); jLabel2.setText("Minimum quality score to keep:"); jLabel5.setText("Minimum percent of bases that must have quality:"); jLabel8.setText("FASTA/Q input file:"); jLabel9.setText("FASTA/Q output file:"); jLabel10.setText("Output directory: "); jButton4.setIcon(new javax.swing.ImageIcon(getClass().getResource("/img/inputfile15x15-2.png"))); // NOI18N jButton4.addActionListener(new java.awt.event.ActionListener() { public void actionPerformed(java.awt.event.ActionEvent evt) { jButton4ActionPerformed(evt); } }); jButton5.setIcon(new javax.swing.ImageIcon(getClass().getResource("/img/pasta15x15.png"))); // NOI18N jButton5.addActionListener(new java.awt.event.ActionListener() { public void actionPerformed(java.awt.event.ActionEvent evt) { jButton5ActionPerformed(evt); } }); jButton6.setText("Processar"); javax.swing.GroupLayout jPanel2Layout = new javax.swing.GroupLayout(jPanel2); jPanel2.setLayout(jPanel2Layout); jPanel2Layout.setHorizontalGroup(jPanel2Layout .createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING) .addGroup(jPanel2Layout.createSequentialGroup().addContainerGap() .addGroup(jPanel2Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING) .addComponent(jLabel5).addComponent(jLabel2).addComponent(jLabel8) .addComponent(jLabel10).addComponent(jLabel9)) .addGap(18, 18, 18) .addGroup(jPanel2Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING) .addComponent(jTextField5, javax.swing.GroupLayout.DEFAULT_SIZE, 199, Short.MAX_VALUE) .addComponent(jTextField6).addComponent(jTextFieldInputFileFiltragem) .addComponent(jTextField4, javax.swing.GroupLayout.DEFAULT_SIZE, 199, Short.MAX_VALUE) .addComponent(jTextFieldOutputDiretorioFiltragem)) .addGap(18, 18, 18) .addGroup(jPanel2Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING) .addComponent(jButton4).addComponent(jButton5)) .addGap(279, 279, 279)) .addGroup(javax.swing.GroupLayout.Alignment.TRAILING, jPanel2Layout.createSequentialGroup() .addGap(0, 0, Short.MAX_VALUE).addComponent(jButton6))); jPanel2Layout.setVerticalGroup(jPanel2Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING) .addGroup(jPanel2Layout.createSequentialGroup().addContainerGap().addGroup(jPanel2Layout .createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE).addComponent(jLabel2) .addComponent(jTextField5, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)) .addGap(18, 18, 18) .addGroup(jPanel2Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE) .addComponent(jLabel5).addComponent(jTextField6, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)) .addGap(18, 18, 18) .addGroup(jPanel2Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING) .addComponent(jButton4, javax.swing.GroupLayout.Alignment.TRAILING) .addGroup(jPanel2Layout .createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE) .addComponent(jLabel8).addComponent(jTextFieldInputFileFiltragem, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))) .addGap(18, 18, 18) .addGroup(jPanel2Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING) .addGroup(jPanel2Layout.createSequentialGroup().addComponent(jLabel9) .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED, 267, Short.MAX_VALUE) .addComponent(jButton6)) .addGroup(jPanel2Layout.createSequentialGroup().addGroup(jPanel2Layout .createParallelGroup(javax.swing.GroupLayout.Alignment.TRAILING) .addComponent(jButton5) .addGroup(jPanel2Layout.createSequentialGroup() .addComponent(jTextField4, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE) .addGap(18, 18, 18) .addGroup(jPanel2Layout .createParallelGroup( javax.swing.GroupLayout.Alignment.BASELINE) .addComponent(jTextFieldOutputDiretorioFiltragem, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE) .addComponent(jLabel10)))) .addGap(10, 10, 10))))); jTabbedPane4.addTab("Filtragem", jPanel2); javax.swing.GroupLayout layout = new javax.swing.GroupLayout(getContentPane()); getContentPane().setLayout(layout); layout.setHorizontalGroup( layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING).addComponent(jTabbedPane4)); layout.setVerticalGroup( layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING).addComponent(jTabbedPane4)); pack(); }// </editor-fold>//GEN-END:initComponents private void jButton2ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_jButton2ActionPerformed JFileChooser chooserDiretorio = new JFileChooser(ViewPrincipal.ROOTWOKSPACE); chooserDiretorio.setFileFilter(filter); chooserDiretorio.setDialogTitle("Escolha o arquivo que deseja importar."); resultado = chooserDiretorio.showOpenDialog(getParent()); if (resultado == JFileChooser.APPROVE_OPTION) { File selectedFile = chooserDiretorio.getSelectedFile(); jTextFieldInputFile.setText(selectedFile.getName()); String fileNameWithOutExt = FilenameUtils.removeExtension(selectedFile.getName()); jTextFieldOutputFile .setText(fileNameWithOutExt + "_trimmed." + FilenameUtils.getExtension(selectedFile.getName())); } else if (resultado == JFileChooser.CANCEL_OPTION) System.out.println("Cancelado."); }//GEN-LAST:event_jButton2ActionPerformed private void jButton3ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_jButton3ActionPerformed JFileChooser chooserDiretorio = new JFileChooser(ViewPrincipal.ROOTWOKSPACE); chooserDiretorio.setFileSelectionMode(JFileChooser.DIRECTORIES_ONLY); chooserDiretorio.setDialogTitle("Escolha o diretrio de saida."); resultado = chooserDiretorio.showOpenDialog(getParent()); if (resultado == JFileChooser.APPROVE_OPTION) { String path = chooserDiretorio.getSelectedFile().getPath(); jTextFieldOutputDirectory.setText(path); } else if (resultado == JFileChooser.CANCEL_OPTION) System.out.println("Cancelado."); }//GEN-LAST:event_jButton3ActionPerformed private void jButton4ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_jButton4ActionPerformed JFileChooser chooserDiretorio = new JFileChooser(ViewPrincipal.ROOTWOKSPACE); chooserDiretorio.setFileFilter(filter); chooserDiretorio.setDialogTitle("Escolha o arquivo que deseja importar."); resultado = chooserDiretorio.showOpenDialog(getParent()); if (resultado == JFileChooser.APPROVE_OPTION) { File selectedFile = chooserDiretorio.getSelectedFile(); jTextFieldInputFileFiltragem.setText(selectedFile.getName()); String fileNameWithOutExt = FilenameUtils.removeExtension(selectedFile.getName()); jTextField4.setText( fileNameWithOutExt + "_filtered." + FilenameUtils.getExtension(selectedFile.getName())); } else if (resultado == JFileChooser.CANCEL_OPTION) System.out.println("Cancelado."); }//GEN-LAST:event_jButton4ActionPerformed private void jButton5ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_jButton5ActionPerformed JFileChooser chooserDiretorio = new JFileChooser(ViewPrincipal.ROOTWOKSPACE); chooserDiretorio.setFileSelectionMode(JFileChooser.DIRECTORIES_ONLY); chooserDiretorio.setDialogTitle("Escolha o diretrio de saida."); resultado = chooserDiretorio.showOpenDialog(getParent()); if (resultado == JFileChooser.APPROVE_OPTION) { String path = chooserDiretorio.getSelectedFile().getPath(); jTextFieldOutputDiretorioFiltragem.setText(path); } else if (resultado == JFileChooser.CANCEL_OPTION) System.out.println("Cancelado."); }//GEN-LAST:event_jButton5ActionPerformed // Variables declaration - do not modify//GEN-BEGIN:variables private javax.swing.JButton jButton1; private javax.swing.JButton jButton2; private javax.swing.JButton jButton3; private javax.swing.JButton jButton4; private javax.swing.JButton jButton5; private javax.swing.JButton jButton6; private javax.swing.JLabel jLabel1; private javax.swing.JLabel jLabel10; private javax.swing.JLabel jLabel2; private javax.swing.JLabel jLabel3; private javax.swing.JLabel jLabel4; private javax.swing.JLabel jLabel5; private javax.swing.JLabel jLabel6; private javax.swing.JLabel jLabel7; private javax.swing.JLabel jLabel8; private javax.swing.JLabel jLabel9; private javax.swing.JPanel jPanel1; private javax.swing.JPanel jPanel2; private javax.swing.JTabbedPane jTabbedPane4; private javax.swing.JTextField jTextField1; private javax.swing.JTextField jTextField2; private javax.swing.JTextField jTextField4; private javax.swing.JTextField jTextField5; private javax.swing.JTextField jTextField6; private javax.swing.JTextField jTextFieldInputFile; private javax.swing.JTextField jTextFieldInputFileFiltragem; private javax.swing.JTextField jTextFieldOutputDirectory; private javax.swing.JTextField jTextFieldOutputDiretorioFiltragem; private javax.swing.JTextField jTextFieldOutputFile; // End of variables declaration//GEN-END:variables }