Java tutorial
/* * To change this license header, choose License Headers in Project Properties. * To change this template file, choose Tools | Templates * and open the template in the editor. */ package uk.ac.ebi.ep.parser.main; import org.springframework.context.annotation.AnnotationConfigApplicationContext; import uk.ac.ebi.ep.parser.parsers.EnzymePortalPathwaysParser; /** * * @author joseph */ public class PathwaysParser { public static void main(String args[]) throws Exception { String file = ""; String profile = ""; if (args == null || args.length == 0) { System.out.println("Please provide required parameters"); System.exit(0); } if (args.length == 2) { profile = args[0]; file = args[1]; AnnotationConfigApplicationContext context = new AnnotationConfigApplicationContext(); context.getEnvironment().setActiveProfiles(profile); //context.scan("uk.ac.ebi.ep.data.dataconfig"); context.scan("uk.ac.ebi.ep.data.dataconfig", "uk.ac.ebi.ep.parser.config"); context.refresh(); EnzymePortalPathwaysParser pathwaysParser = context.getBean(EnzymePortalPathwaysParser.class); pathwaysParser.parseReactomeFile(file);//Total time: 1:57:24.500s } } }