ubic.gemma.core.loader.entrez.EutilFetchTest.java Source code

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Here is the source code for ubic.gemma.core.loader.entrez.EutilFetchTest.java

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/*
 * The Gemma project
 *
 * Copyright (c) 2007 University of British Columbia
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 *       http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 *
 */
package ubic.gemma.core.loader.entrez;

import junit.framework.TestCase;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;

import java.io.FileNotFoundException;
import java.io.IOException;

/**
 * @author paul
 */
public class EutilFetchTest extends TestCase {

    private static final Log log = LogFactory.getLog(EutilFetchTest.class.getName());

    final public void testFetch() throws Exception {
        try {
            String result = EutilFetch.fetch("gds", "GSE4595", 2);
            TestCase.assertNotNull(result);
            TestCase.assertTrue("Got " + result, result.startsWith("<?xml"));
        } catch (Exception e) {
            if (e.getCause() instanceof IOException && e.getCause().getMessage().contains("502")) {
                EutilFetchTest.log.warn("Error 502 from NCBI, skipping test");
                return;
            } else if (e.getCause() instanceof IOException && e.getCause().getMessage().contains("503")) {
                EutilFetchTest.log.warn("Error 503 from NCBI, skipping test");
                return;
            } else if (e.getCause() instanceof FileNotFoundException) {
                EutilFetchTest.log.warn("FileNotFound - is Eutil down? Skipping test");
                return;
            }
            throw (e);
        }
    }
}