Java tutorial
/* * Copyright (c) 2004, the JUNG Project and the Regents of the University of * California All rights reserved. * * This software is open-source under the BSD license; see either "license.txt" * or http://jung.sourceforge.net/license.txt for a description. * * * Created on Nov 7, 2004 */ package sim.graph; import java.awt.BasicStroke; import java.awt.BorderLayout; import java.awt.Color; import java.awt.Component; import java.awt.Dimension; import java.awt.FlowLayout; import java.awt.Font; import java.awt.GradientPaint; import java.awt.GridLayout; import java.awt.Paint; import java.awt.Shape; import java.awt.Stroke; import java.awt.event.ActionEvent; import java.awt.event.ActionListener; import java.awt.event.MouseEvent; import java.awt.event.MouseListener; import java.awt.geom.Point2D; import java.util.Collection; import java.util.HashSet; import java.util.Iterator; import java.util.Set; import javax.swing.AbstractAction; import javax.swing.AbstractButton; import javax.swing.BorderFactory; import javax.swing.Box; import javax.swing.ButtonGroup; import javax.swing.JApplet; import javax.swing.JButton; import javax.swing.JCheckBox; import javax.swing.JComboBox; import javax.swing.JFrame; import javax.swing.JPanel; import javax.swing.JPopupMenu; import javax.swing.JRadioButton; import javax.swing.event.ChangeEvent; import javax.swing.event.ChangeListener; import org.apache.commons.collections.Predicate; import sim.DefaultProcess; import sim.EvolutionaryProcess; import sim.Parameters; import sim.datatype.MyVector; import sim.datatype.OnewayInteraction; import edu.uci.ics.jung.algorithms.importance.VoltageRanker; import edu.uci.ics.jung.graph.DirectedEdge; import edu.uci.ics.jung.graph.Edge; import edu.uci.ics.jung.graph.Graph; import edu.uci.ics.jung.graph.UndirectedEdge; import edu.uci.ics.jung.graph.Vertex; import edu.uci.ics.jung.graph.decorators.AbstractVertexShapeFunction; import edu.uci.ics.jung.graph.decorators.ConstantEdgeStringer; import edu.uci.ics.jung.graph.decorators.ConstantVertexStringer; import edu.uci.ics.jung.graph.decorators.DefaultToolTipFunction; import edu.uci.ics.jung.graph.decorators.EdgeFontFunction; import edu.uci.ics.jung.graph.decorators.EdgePaintFunction; import edu.uci.ics.jung.graph.decorators.EdgeShape; import edu.uci.ics.jung.graph.decorators.EdgeStringer; import edu.uci.ics.jung.graph.decorators.EdgeStrokeFunction; import edu.uci.ics.jung.graph.decorators.GradientEdgePaintFunction; import edu.uci.ics.jung.graph.decorators.NumberEdgeValue; import edu.uci.ics.jung.graph.decorators.NumberEdgeValueStringer; import edu.uci.ics.jung.graph.decorators.NumberVertexValue; import edu.uci.ics.jung.graph.decorators.NumberVertexValueStringer; import edu.uci.ics.jung.graph.decorators.PickableEdgePaintFunction; import edu.uci.ics.jung.graph.decorators.UserDatumNumberEdgeValue; import edu.uci.ics.jung.graph.decorators.UserDatumNumberVertexValue; import edu.uci.ics.jung.graph.decorators.VertexAspectRatioFunction; import edu.uci.ics.jung.graph.decorators.VertexFontFunction; import edu.uci.ics.jung.graph.decorators.VertexPaintFunction; import edu.uci.ics.jung.graph.decorators.VertexSizeFunction; import edu.uci.ics.jung.graph.decorators.VertexStringer; import edu.uci.ics.jung.graph.decorators.VertexStrokeFunction; import edu.uci.ics.jung.graph.impl.SparseVertex; import edu.uci.ics.jung.graph.predicates.SelfLoopEdgePredicate; import edu.uci.ics.jung.utils.MutableDouble; import edu.uci.ics.jung.visualization.DefaultVisualizationModel; import edu.uci.ics.jung.visualization.FRLayout; import edu.uci.ics.jung.visualization.GraphZoomScrollPane; import edu.uci.ics.jung.visualization.HasGraphLayout; import edu.uci.ics.jung.visualization.Layout; import edu.uci.ics.jung.visualization.PickSupport; import edu.uci.ics.jung.visualization.PickedInfo; import edu.uci.ics.jung.visualization.PickedState; import edu.uci.ics.jung.visualization.PluggableRenderer; import edu.uci.ics.jung.visualization.ShapePickSupport; import edu.uci.ics.jung.visualization.VisualizationViewer; import edu.uci.ics.jung.visualization.control.AbstractPopupGraphMousePlugin; import edu.uci.ics.jung.visualization.control.CrossoverScalingControl; import edu.uci.ics.jung.visualization.control.DefaultModalGraphMouse; import edu.uci.ics.jung.visualization.control.ScalingControl; import edu.uci.ics.jung.visualization.transform.LayoutTransformer; import edu.uci.ics.jung.visualization.transform.Transformer; /** * This code was edited or generated using CloudGarden's Jigloo * SWT/Swing GUI Builder, which is free for non-commercial * use. If Jigloo is being used commercially (ie, by a corporation, * company or business for any purpose whatever) then you * should purchase a license for each developer using Jigloo. * Please visit www.cloudgarden.com for details. * Use of Jigloo implies acceptance of these licensing terms. * A COMMERCIAL LICENSE HAS NOT BEEN PURCHASED FOR * THIS MACHINE, SO JIGLOO OR THIS CODE CANNOT BE USED * LEGALLY FOR ANY CORPORATE OR COMMERCIAL PURPOSE. */ /** * Shows off some of the capabilities of <code>PluggableRenderer</code>. * This code provides examples of different ways to provide and * change the various functions that provide property information * to the renderer. * * <p>This demo creates a random mixed-mode graph with random edge * weights using <code>TestGraph.generateMixedRandomGraph</code>. * It then runs <code>VoltageRanker</code> on this graph, using half * of the "seed" vertices from the random graph generation as * voltage sources, and half of them as voltage sinks.</p> * * <p>What the controls do: * <ul> * <li/>Mouse controls: * <ul> * <li/>If your mouse has a scroll wheel, scrolling forward zooms out and * scrolling backward zooms in. * <li/>Left-clicking on a vertex or edge selects it, and unselects all others. * <li/>Middle-clicking on a vertex or edge toggles its selection state. * <li/>Right-clicking on a vertex brings up a pop-up menu that allows you to * increase or decrease that vertex's transparency. * <li/>Left-clicking on the background allows you to drag the image around. * <li/>Hovering over a vertex tells you what its voltage is; hovering over an * edge shows its identity; hovering over the background shows an informational * message. </ul> * <li/>Vertex stuff: * <ul> * <li/>"vertex seed coloring": if checked, the seed vertices are colored blue, * and all other vertices are colored red. Otherwise, all vertices are colored * a slightly transparent red (except the currently "picked" vertex, which is * colored transparent purple). * <li/>"vertex selection stroke highlighting": if checked, the picked vertex * and its neighbors are all drawn with heavy borders. Otherwise, all vertices * are drawn with light borders. * <li/>"show vertex ranks (voltages)": if checked, each vertex is labeled with its * calculated 'voltage'. Otherwise, vertices are unlabeled. * <li/>"vertex degree shapes": if checked, vertices are drawn with a polygon with * number of sides proportional to its degree. Otherwise, vertices are drawn * as ellipses. * <li/>"vertex voltage size": if checked, vertices are drawn with a size * proportional to their voltage ranking. Otherwise, all vertices are drawn * at the same size. * <li/>"vertex degree ratio stretch": if checked, vertices are drawn with an * aspect ratio (height/width ratio) proportional to the ratio of their indegree to * their outdegree. Otherwise, vertices are drawn with an aspect ratio of 1. * <li/>"filter vertices of degree < 4": if checked, does not display any vertices * (or their incident edges) whose degree in the original graph is less than 4; * otherwise, all vertices are drawn. * </ul> * <li/>Edge stuff: * <ul> * <li/>"edge shape": selects between lines, wedges, quadratic curves, and cubic curves * for drawing edges. * <li/>"fill edge shapes": if checked, fills the edge shapes. This will have no effect * if "line" is selected. * <li/>"edge paint": selects between solid colored edges, and gradient-painted edges. * Gradient painted edges are darkest in the middle for undirected edges, and darkest * at the destination for directed edges. * <li/>"show edges": only edges of the checked types are drawn. * <li/>"show arrows": only arrows whose edges are of the checked types are drawn. * <li/>"edge weight highlighting": if checked, edges with weight greater than * a threshold value are drawn using thick solid lines, and other edges are drawn * using thin gray dotted lines. (This combines edge stroke and paint.) Otherwise, * all edges are drawn with thin solid lines. * <li/>"show edge weights": if checked, edges are labeled with their weights. * Otherwise, edges are not labeled. * </ul> * <li/>Miscellaneous (center panel) * <ul> * <li/>"bold text": if checked, all vertex and edge labels are drawn using a * boldface font. Otherwise, a normal-weight font is used. (Has no effect if * no labels are currently visible.) * <li/>zoom controls: * <ul> * <li/>"+" zooms in, "-" zooms out * <li/>"zoom at mouse (wheel only)": if checked, zooming (using the mouse * scroll wheel) is centered on the location of the mouse pointer; otherwise, * it is centered on the center of the visualization pane. * </ul> * </ul> * </p> * * @author Danyel Fisher, Joshua O'Madadhain, Tom Nelson */ public class MyPluggableRendererDemo extends JApplet implements ActionListener, ChangeListener { private static final long serialVersionUID = 1L; protected JCheckBox v_color; protected JCheckBox e_color; protected JCheckBox v_stroke; protected JCheckBox e_uarrow_pred; protected JCheckBox e_darrow_pred; protected JCheckBox v_shape; protected JCheckBox v_size; protected JCheckBox v_aspect; protected JCheckBox v_labels; protected JRadioButton e_line; protected JRadioButton e_bent; protected JRadioButton e_wedge; protected JRadioButton e_quad; protected JRadioButton e_cubic; protected JCheckBox e_labels; protected JCheckBox font; protected JCheckBox e_show_d; protected JCheckBox e_show_u; protected JCheckBox v_small; protected JCheckBox zoom_at_mouse; protected JCheckBox fill_edges; protected JRadioButton no_gradient; // protected JRadioButton gradient_absolute; protected JRadioButton gradient_relative; protected static final int GRADIENT_NONE = 0; protected static final int GRADIENT_RELATIVE = 1; // protected static final int GRADIENT_ABSOLUTE = 2; protected static int gradient_level = GRADIENT_NONE; protected PluggableRenderer pr; protected SeedColor vcf; protected EdgeWeightStrokeFunction ewcs; protected VertexStrokeHighlight vsh; protected VertexStringer vs; protected VertexStringer vs_none; protected EdgeStringer es; protected EdgeStringer es_none; protected FontHandler ff; protected VertexShapeSizeAspect vssa; protected DirectionDisplayPredicate show_edge; protected DirectionDisplayPredicate show_arrow; protected VertexDisplayPredicate show_vertex; protected GradientPickedEdgePaintFunction edgePaint; protected final static Object VOLTAGE_KEY = "voltages"; protected final static Object TRANSPARENCY = "transparency"; protected NumberEdgeValue edge_weight = new UserDatumNumberEdgeValue("edge_weight"); protected NumberVertexValue voltages = new UserDatumNumberVertexValue(VOLTAGE_KEY); protected NumberVertexValue transparency = new UserDatumNumberVertexValue(TRANSPARENCY); protected VisualizationViewer visViewer; protected DefaultVisualizationModel model; protected DefaultModalGraphMouse gm; protected Transformer affineTransformer; protected GraphNetwork net; EvolutionaryProcess process; Parameters p; public JPanel viewPanel; public JPanel control_panel; public void start() { getContentPane().add(startFunction()); } public static void main(String[] s) { // JFrame jf = new JFrame(); // jf.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE); // // JPanel jp = new MyPluggableRendererDemo(new DefaultProcess()).startFunction(); // jf.getContentPane().add(jp); // jf.pack(); // jf.setVisible(true); } public MyPluggableRendererDemo(EvolutionaryProcess process, GraphNetwork displayed) { this.process = process; this.net = displayed; p = process.getParameters(); // JFrame frame = new JFrame(); // frame.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE); viewPanel = startFunction(); // frame.getContentPane().add(viewPanel); // frame.pack(); } public JPanel startFunction() { // Graph g = getGraph(); setupGraph(); pr = new PluggableRenderer(); Layout layout = new FRLayout(net); // net.removeAllVertices(); model = new DefaultVisualizationModel(layout); // model.addChangeListener(this); visViewer = new VisualizationViewer(model, pr); // add Shape based pick support visViewer.setPickSupport(new ShapePickSupport()); PickedState picked_state = visViewer.getPickedState(); affineTransformer = visViewer.getLayoutTransformer(); // create decorators vcf = new SeedColor(picked_state); ewcs = new EdgeWeightStrokeFunction(edge_weight); vsh = new VertexStrokeHighlight(picked_state); ff = new FontHandler(); vs_none = new ConstantVertexStringer(null); es_none = new ConstantEdgeStringer(null); vssa = new VertexShapeSizeAspect(voltages); show_edge = new DirectionDisplayPredicate(true, true); show_arrow = new DirectionDisplayPredicate(true, false); show_vertex = new VertexDisplayPredicate(false); // uses a gradient edge if unpicked, otherwise uses picked selection edgePaint = new GradientPickedEdgePaintFunction( new PickableEdgePaintFunction(picked_state, Color.black, Color.cyan), visViewer, visViewer, picked_state); pr.setVertexPaintFunction(vcf); pr.setVertexStrokeFunction(vsh); pr.setVertexStringer(vs_none); pr.setVertexFontFunction(ff); pr.setVertexShapeFunction(vssa); pr.setVertexIncludePredicate(show_vertex); pr.setEdgePaintFunction(edgePaint); pr.setEdgeStringer(es_none); pr.setEdgeFontFunction(ff); pr.setEdgeStrokeFunction(ewcs); pr.setEdgeIncludePredicate(show_edge); pr.setEdgeShapeFunction(new EdgeShape.Line()); pr.setEdgeArrowPredicate(show_arrow); JPanel jp = new JPanel(); jp.setLayout(new BorderLayout()); visViewer.setBackground(Color.white); GraphZoomScrollPane scrollPane = new GraphZoomScrollPane(visViewer); jp.add(scrollPane); gm = new DefaultModalGraphMouse(); visViewer.setGraphMouse(gm); gm.add(new PopupGraphMousePlugin()); addBottomControls(); // jp.add(control_panel, BorderLayout.SOUTH); vssa.setScaling(true); visViewer.setToolTipFunction(new VoltageTips()); visViewer.setToolTipText( "<html><center>Use the mouse wheel to zoom<p>Click and Drag the mouse to pan<p>Shift-click and Drag to Rotate</center></html>"); return jp; } /** * Generates a mixed-mode random graph, runs VoltageRanker on it, and * returns the resultant graph. */ public void setupGraph() { // TestGraphNetworkGenerator tng = new TestGraphNetworkGenerator(p); // RandomGraphNetworkGenerator rng = new RandomGraphNetworkGenerator(process); // net = (GraphNetwork) rng.generateNewNetwork(); // net = (GraphNetwork) this.process.getPopulation().get(0); // Graph g = TestGraphs.generateMixedRandomGraph(edge_weight, 20, false); vs = new NumberVertexValueStringer(voltages); es = new NumberEdgeValueStringer(edge_weight); for (Iterator iter = net.getEdges().iterator(); iter.hasNext();) { Edge e = (Edge) iter.next(); if (e instanceof DimerisingEdge) { DimerisingEdge de = (DimerisingEdge) e; edge_weight.setNumber(de, 0); } else if (e instanceof RegulatoryEdge) { RegulatoryEdge re = (RegulatoryEdge) e; edge_weight.setNumber(re, re.getValue()); } // Edge e = (Edge)iter.next(); // // edge_weight.setNumber(e, new Double(Math.random())); } // collect the seeds used to define the random graph Collection seeds = net.getVertices(); // PredicateUtils.getVertices(g, // new ContainsUserDataKeyVertexPredicate(BarabasiAlbertGenerator.SEED)); // if (seeds.size() < 2) // System.out.println("need at least 2 seeds (one source, one sink)"); // use these seeds as source and sink vertices, run VoltageRanker boolean source = true; Set sources = new HashSet(); Set sinks = new HashSet(); for (Iterator iter = seeds.iterator(); iter.hasNext();) { if (source) sources.add(iter.next()); else sinks.add(iter.next()); source = !source; } VoltageRanker vr = new VoltageRanker(edge_weight, voltages, 100, 0.01); vr.calculateVoltages(net, sources, sinks); Set verts = net.getVertices(); // assign a transparency value of 0.9 to all vertices for (Iterator iter = verts.iterator(); iter.hasNext();) { Vertex v = (Vertex) iter.next(); transparency.setNumber(v, new MutableDouble(0.9)); } // add a couple of self-loops (sanity check on rendering) // Vertex v = (Vertex)verts.iterator().next(); // Edge e = new DirectedSparseEdge(v,v); // edge_weight.setNumber(e, new Double(Math.random())); // g.addEdge(e); // e = new UndirectedSparseEdge(v,v); // edge_weight.setNumber(e, new Double(Math.random())); // g.addEdge(e); } /** * @param jp panel to which controls will be added */ protected void addBottomControls(/*final JPanel jp*/) { /*final JPanel*/ control_panel = new JPanel(); // jp.add(control_panel, BorderLayout.SOUTH); // control_panel.setLayout(new BorderLayout()); control_panel.setLayout(new FlowLayout()); final Box vertex_panel = Box.createVerticalBox(); vertex_panel.setBorder(BorderFactory.createTitledBorder("Vertices")); final Box edge_panel = Box.createVerticalBox(); edge_panel.setBorder(BorderFactory.createTitledBorder("Edges")); final Box both_panel = Box.createVerticalBox(); control_panel.add(vertex_panel, BorderLayout.WEST); control_panel.add(edge_panel, BorderLayout.EAST); control_panel.add(both_panel, BorderLayout.CENTER); // set up vertex controls v_color = new JCheckBox("dimer coloring"); v_color.addActionListener(this); v_stroke = new JCheckBox("<html>vertex selection<p>stroke highlighting</html>"); v_stroke.addActionListener(this); v_labels = new JCheckBox("show vertex ranks (voltages)"); v_labels.addActionListener(this); v_shape = new JCheckBox("vertex degree shapes"); v_shape.addActionListener(this); v_size = new JCheckBox("vertex voltage size"); v_size.addActionListener(this); v_size.setSelected(true); v_aspect = new JCheckBox("vertex degree ratio stretch"); v_aspect.addActionListener(this); v_small = new JCheckBox("filter vertices of degree < " + VertexDisplayPredicate.MIN_DEGREE); v_small.addActionListener(this); vertex_panel.add(v_color); vertex_panel.add(v_stroke); vertex_panel.add(v_labels); vertex_panel.add(v_shape); vertex_panel.add(v_size); vertex_panel.add(v_aspect); vertex_panel.add(v_small); // set up edge controls JPanel gradient_panel = new JPanel(new GridLayout(1, 0)); gradient_panel.setBorder(BorderFactory.createTitledBorder("Edge paint")); no_gradient = new JRadioButton("Solid color"); no_gradient.addActionListener(this); no_gradient.setSelected(true); // gradient_absolute = new JRadioButton("Absolute gradient"); // gradient_absolute.addActionListener(this); gradient_relative = new JRadioButton("Gradient"); gradient_relative.addActionListener(this); ButtonGroup bg_grad = new ButtonGroup(); bg_grad.add(no_gradient); bg_grad.add(gradient_relative); //bg_grad.add(gradient_absolute); gradient_panel.add(no_gradient); //gradientGrid.add(gradient_absolute); gradient_panel.add(gradient_relative); JPanel shape_panel = new JPanel(new GridLayout(3, 2)); shape_panel.setBorder(BorderFactory.createTitledBorder("Edge shape")); e_line = new JRadioButton("line"); e_line.addActionListener(this); e_line.setSelected(true); // e_bent = new JRadioButton("bent line"); // e_bent.addActionListener(this); e_wedge = new JRadioButton("wedge"); e_wedge.addActionListener(this); e_quad = new JRadioButton("quad curve"); e_quad.addActionListener(this); e_cubic = new JRadioButton("cubic curve"); e_cubic.addActionListener(this); ButtonGroup bg_shape = new ButtonGroup(); bg_shape.add(e_line); // bg.add(e_bent); bg_shape.add(e_wedge); bg_shape.add(e_quad); bg_shape.add(e_cubic); shape_panel.add(e_line); // shape_panel.add(e_bent); shape_panel.add(e_wedge); shape_panel.add(e_quad); shape_panel.add(e_cubic); fill_edges = new JCheckBox("fill edge shapes"); fill_edges.setSelected(false); fill_edges.addActionListener(this); shape_panel.add(fill_edges); shape_panel.setOpaque(true); e_color = new JCheckBox("edge weight highlighting"); e_color.addActionListener(this); e_labels = new JCheckBox("show edge weights"); e_labels.addActionListener(this); e_uarrow_pred = new JCheckBox("undirected"); e_uarrow_pred.addActionListener(this); e_darrow_pred = new JCheckBox("directed"); e_darrow_pred.addActionListener(this); e_darrow_pred.setSelected(true); JPanel arrow_panel = new JPanel(new GridLayout(1, 0)); arrow_panel.setBorder(BorderFactory.createTitledBorder("Show arrows")); arrow_panel.add(e_uarrow_pred); arrow_panel.add(e_darrow_pred); e_show_d = new JCheckBox("directed"); e_show_d.addActionListener(this); e_show_d.setSelected(true); e_show_u = new JCheckBox("undirected"); e_show_u.addActionListener(this); e_show_u.setSelected(true); JPanel show_edge_panel = new JPanel(new GridLayout(1, 0)); show_edge_panel.setBorder(BorderFactory.createTitledBorder("Show edges")); show_edge_panel.add(e_show_u); show_edge_panel.add(e_show_d); shape_panel.setAlignmentX(Component.LEFT_ALIGNMENT); edge_panel.add(shape_panel); gradient_panel.setAlignmentX(Component.LEFT_ALIGNMENT); edge_panel.add(gradient_panel); show_edge_panel.setAlignmentX(Component.LEFT_ALIGNMENT); edge_panel.add(show_edge_panel); arrow_panel.setAlignmentX(Component.LEFT_ALIGNMENT); edge_panel.add(arrow_panel); e_color.setAlignmentX(Component.LEFT_ALIGNMENT); edge_panel.add(e_color); e_labels.setAlignmentX(Component.LEFT_ALIGNMENT); edge_panel.add(e_labels); // set up zoom controls zoom_at_mouse = new JCheckBox("<html><center>zoom at mouse<p>(wheel only)</center></html>"); zoom_at_mouse.addActionListener(this); final ScalingControl scaler = new CrossoverScalingControl(); JButton plus = new JButton("+"); plus.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) { scaler.scale(visViewer, 1.1f, visViewer.getCenter()); } }); JButton minus = new JButton("-"); minus.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) { scaler.scale(visViewer, 1 / 1.1f, visViewer.getCenter()); } }); Box zoomPanel = Box.createVerticalBox(); zoomPanel.setBorder(BorderFactory.createTitledBorder("Zoom")); plus.setAlignmentX(Component.CENTER_ALIGNMENT); zoomPanel.add(plus); minus.setAlignmentX(Component.CENTER_ALIGNMENT); zoomPanel.add(minus); zoom_at_mouse.setAlignmentX(Component.CENTER_ALIGNMENT); zoomPanel.add(zoom_at_mouse); // add font and zoom controls to center panel font = new JCheckBox("bold text"); font.addActionListener(this); font.setAlignmentX(Component.CENTER_ALIGNMENT); both_panel.add(zoomPanel); both_panel.add(font); JComboBox modeBox = gm.getModeComboBox(); modeBox.setAlignmentX(Component.CENTER_ALIGNMENT); JPanel modePanel = new JPanel(new BorderLayout()) { public Dimension getMaximumSize() { return getPreferredSize(); } }; modePanel.setBorder(BorderFactory.createTitledBorder("Mouse Mode")); modePanel.add(modeBox); both_panel.add(modePanel); } public void stateChanged(ChangeEvent e) { System.out.println("changed: " + e.getSource()); } public void actionPerformed(ActionEvent e) { AbstractButton source = (AbstractButton) e.getSource(); if (source == v_color) { vcf.setSeedColoring(source.isSelected()); } else if (source == e_color) { ewcs.setWeighted(source.isSelected()); } else if (source == v_stroke) { vsh.setHighlight(source.isSelected()); } else if (source == v_labels) { if (source.isSelected()) pr.setVertexStringer(vs); else pr.setVertexStringer(vs_none); } else if (source == e_labels) { if (source.isSelected()) pr.setEdgeStringer(es); else pr.setEdgeStringer(es_none); } else if (source == e_uarrow_pred) { show_arrow.showUndirected(source.isSelected()); } else if (source == e_darrow_pred) { show_arrow.showDirected(source.isSelected()); } else if (source == font) { ff.setBold(source.isSelected()); } else if (source == v_shape) { vssa.useFunnyShapes(source.isSelected()); } else if (source == v_size) { vssa.setScaling(source.isSelected()); } else if (source == v_aspect) { vssa.setStretching(source.isSelected()); } else if (source == e_line) { if (source.isSelected()) { pr.setEdgeShapeFunction(new EdgeShape.Line()); } } else if (source == e_wedge) { if (source.isSelected()) pr.setEdgeShapeFunction(new EdgeShape.Wedge(10)); } // else if (source == e_bent) // { // if(source.isSelected()) // { // pr.setEdgeShapeFunction(new EdgeShape.BentLine()); // } // } else if (source == e_quad) { if (source.isSelected()) { pr.setEdgeShapeFunction(new EdgeShape.QuadCurve()); } } else if (source == e_cubic) { if (source.isSelected()) { pr.setEdgeShapeFunction(new EdgeShape.CubicCurve()); } } else if (source == e_show_d) { show_edge.showDirected(source.isSelected()); } else if (source == e_show_u) { show_edge.showUndirected(source.isSelected()); } else if (source == v_small) { show_vertex.filterSmall(source.isSelected()); } else if (source == zoom_at_mouse) { gm.setZoomAtMouse(source.isSelected()); } else if (source == no_gradient) { if (source.isSelected()) { gradient_level = GRADIENT_NONE; } // } else if (source == gradient_absolute) { // if (source.isSelected()) { // gradient_level = GRADIENT_ABSOLUTE; // } } else if (source == gradient_relative) { if (source.isSelected()) { gradient_level = GRADIENT_RELATIVE; } } else if (source == fill_edges) { edgePaint.useFill(source.isSelected()); } visViewer.repaint(); } private final class SeedColor implements VertexPaintFunction { protected PickedInfo pi; protected final static float dark_value = 0.5f; protected final static float light_value = 0.2f; protected boolean seed_coloring; public SeedColor(PickedInfo pi) { this.pi = pi; seed_coloring = false; } public void setSeedColoring(boolean b) { this.seed_coloring = b; } public Paint getDrawPaint(Vertex v) { return Color.ORANGE; } public Paint getFillPaint(Vertex v) { float alpha = transparency.getNumber(v).floatValue(); if (pi.isPicked(v)) { return new Color(1f, 1f, 0, alpha); } else { // if (seed_coloring && v.containsUserDatumKey(BarabasiAlbertGenerator.SEED)) // int index = ng.getVertexVector().get(0).indexOf(v); int index = net.getIndexOf((VertexElement) v); if (seed_coloring && net.getElementVector().get(index).isDimer()) { Color dark = new Color(0, 0, dark_value, alpha); Color light = new Color(0, 0, light_value, alpha); return new GradientPaint(0, 0, dark, 10, 0, light, true); } else return new Color(1f, 0, 0, alpha); } } } private final static class EdgeWeightStrokeFunction implements EdgeStrokeFunction { protected static final Stroke basic = new BasicStroke(1); protected static final Stroke heavy = new BasicStroke(2); protected static final Stroke dotted = PluggableRenderer.DOTTED; protected boolean weighted = false; protected NumberEdgeValue edge_weight; public EdgeWeightStrokeFunction(NumberEdgeValue edge_weight) { this.edge_weight = edge_weight; } public void setWeighted(boolean weighted) { this.weighted = weighted; } public Stroke getStroke(Edge e) { if (weighted) { if (drawHeavy(e)) return heavy; else return dotted; } else return basic; } protected boolean drawHeavy(Edge e) { // double value = edge_weight.getNumber(e).doubleValue(); // if (value > 0.7) // return true; // else // return false; VertexElement v1 = (VertexElement) e.getEndpoints().getFirst(); VertexElement v2 = (VertexElement) e.getEndpoints().getSecond(); boolean dimerising = false; if (v1.isDimer() ^ v2.isDimer()) { if (v2.isDimer()) { MyVector<OnewayInteraction> inputs = v2.getDimerisingInputs(); if (inputs.contains(v1)) dimerising = true; } else { MyVector<OnewayInteraction> inputs = v1.getDimerisingInputs(); if (inputs.contains(v2)) dimerising = true; } } if (!dimerising) return true; else return false; } } private final static class VertexStrokeHighlight implements VertexStrokeFunction { protected boolean highlight = false; protected Stroke heavy = new BasicStroke(5); protected Stroke medium = new BasicStroke(3); protected Stroke light = new BasicStroke(1); protected PickedInfo pi; public VertexStrokeHighlight(PickedInfo pi) { this.pi = pi; } public void setHighlight(boolean highlight) { this.highlight = highlight; } public Stroke getStroke(Vertex v) { if (highlight) { if (pi.isPicked(v)) return heavy; else { for (Iterator iter = v.getNeighbors().iterator(); iter.hasNext();) { Vertex w = (Vertex) iter.next(); if (pi.isPicked(w)) return medium; } return light; } } else return light; } } private final static class FontHandler implements VertexFontFunction, EdgeFontFunction { protected boolean bold = false; Font f = new Font("Helvetica", Font.PLAIN, 12); Font b = new Font("Helvetica", Font.BOLD, 12); public void setBold(boolean bold) { this.bold = bold; } public Font getFont(Vertex v) { if (bold) return b; else return f; } public Font getFont(Edge e) { if (bold) return b; else return f; } } private final static class DirectionDisplayPredicate implements Predicate { protected boolean show_d; protected boolean show_u; public DirectionDisplayPredicate(boolean show_d, boolean show_u) { this.show_d = show_d; this.show_u = show_u; } public void showDirected(boolean b) { show_d = b; } public void showUndirected(boolean b) { show_u = b; } public boolean evaluate(Object arg0) { if (arg0 instanceof DirectedEdge && show_d) return true; if (arg0 instanceof UndirectedEdge && show_u) return true; return false; } } private final static class VertexDisplayPredicate implements Predicate { protected boolean filter_small; protected final static int MIN_DEGREE = 4; public VertexDisplayPredicate(boolean filter) { this.filter_small = filter; } public void filterSmall(boolean b) { filter_small = b; } public boolean evaluate(Object arg0) { Vertex v = (Vertex) arg0; if (filter_small) return (v.degree() >= MIN_DEGREE); else return true; } } /** * Controls the shape, size, and aspect ratio for each vertex. * * @author Joshua O'Madadhain */ private final static class VertexShapeSizeAspect extends AbstractVertexShapeFunction implements VertexSizeFunction, VertexAspectRatioFunction { protected boolean stretch = false; protected boolean scale = false; protected boolean funny_shapes = false; protected NumberVertexValue voltages; public VertexShapeSizeAspect(NumberVertexValue voltages) { this.voltages = voltages; setSizeFunction(this); setAspectRatioFunction(this); } public void setStretching(boolean stretch) { this.stretch = stretch; } public void setScaling(boolean scale) { this.scale = scale; } public void useFunnyShapes(boolean use) { this.funny_shapes = use; } public int getSize(Vertex v) { if (scale) return (int) (voltages.getNumber(v).doubleValue() * 30) + 20; else return 20; } public float getAspectRatio(Vertex v) { if (stretch) return (float) (v.inDegree() + 1) / (v.outDegree() + 1); else return 1.0f; } public Shape getShape(Vertex v) { if (funny_shapes) { if (v.degree() < 5) { int sides = Math.max(v.degree(), 3); return factory.getRegularPolygon(v, sides); } else return factory.getRegularStar(v, v.degree()); } else return factory.getEllipse(v); } } /** * a GraphMousePlugin that offers popup * menu support */ protected class PopupGraphMousePlugin extends AbstractPopupGraphMousePlugin implements MouseListener { public PopupGraphMousePlugin() { this(MouseEvent.BUTTON3_MASK); } public PopupGraphMousePlugin(int modifiers) { super(modifiers); } /** * If this event is over a Vertex, pop up a menu to * allow the user to increase/decrease the voltage * attribute of this Vertex * @param e */ protected void handlePopup(MouseEvent e) { final VisualizationViewer vv = (VisualizationViewer) e.getSource(); Point2D p = vv.inverseViewTransform(e.getPoint()); PickSupport pickSupport = vv.getPickSupport(); if (pickSupport != null) { final Vertex v = pickSupport.getVertex(p.getX(), p.getY()); if (v != null) { JPopupMenu popup = new JPopupMenu(); popup.add(new AbstractAction("Decrease Transparency") { public void actionPerformed(ActionEvent e) { MutableDouble value = (MutableDouble) transparency.getNumber(v); value.setDoubleValue(Math.min(1, value.doubleValue() + 0.1)); vv.repaint(); } }); popup.add(new AbstractAction("Increase Transparency") { public void actionPerformed(ActionEvent e) { MutableDouble value = (MutableDouble) transparency.getNumber(v); value.setDoubleValue(Math.max(0, value.doubleValue() - 0.1)); vv.repaint(); } }); popup.show(vv, e.getX(), e.getY()); } else { final Edge edge = pickSupport.getEdge(p.getX(), p.getY()); if (edge != null) { JPopupMenu popup = new JPopupMenu(); popup.add(new AbstractAction(edge.toString()) { public void actionPerformed(ActionEvent e) { System.err.println("got " + edge); } }); popup.show(vv, e.getX(), e.getY()); } } } } } public class VoltageTips extends DefaultToolTipFunction { public String getToolTipText(Vertex v) { return "Voltage:" + voltages.getNumber(v); } public String getToolTipText(Edge edge) { return edge.toString(); } } public class GradientPickedEdgePaintFunction extends GradientEdgePaintFunction { private PickedInfo pi; private EdgePaintFunction defaultFunc; private final Predicate self_loop = SelfLoopEdgePredicate.getInstance(); protected boolean fill_edge = false; public GradientPickedEdgePaintFunction(EdgePaintFunction defaultEdgePaintFunction, HasGraphLayout vv, LayoutTransformer transformer, PickedInfo pi) { super(Color.WHITE, Color.BLACK, vv, transformer); this.defaultFunc = defaultEdgePaintFunction; this.pi = pi; } public void useFill(boolean b) { fill_edge = b; } public Paint getDrawPaint(Edge e) { if (gradient_level == GRADIENT_NONE) { return defaultFunc.getDrawPaint(e); } else { return super.getDrawPaint(e); } } protected Color getColor2(Edge e) { return pi.isPicked(e) ? Color.CYAN : c2; } public Paint getFillPaint(Edge e) { if (self_loop.evaluate(e) || !fill_edge) return null; else return getDrawPaint(e); } } // public JPanel getControl_panel() { // return control_panel; // } // // public void setControl_panel(JPanel control_panel) { // this.control_panel = control_panel; // } public JPanel getViewPanel() { return viewPanel; } public void setViewPanel(JPanel viewPanel) { this.viewPanel = viewPanel; } public VisualizationViewer getVisViewer() { return visViewer; } public void setVisViewer(VisualizationViewer visViewer) { this.visViewer = visViewer; } public GraphNetwork getNet() { return net; } public void setNet(GraphNetwork net) { this.net = net; } }