org.roche.antibody.ui.actions.menu.AntibodySaveXmlAction.java Source code

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Here is the source code for org.roche.antibody.ui.actions.menu.AntibodySaveXmlAction.java

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/*******************************************************************************
 * Copyright C 2015, Roche pREDi (Roche Innovation Center Penzberg)
 * 
 * Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated
 * documentation files (the "Software"), to deal in the Software without restriction, including without limitation the
 * rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to
 * permit persons to whom the Software is furnished to do so, subject to the following conditions:
 * 
 * The above copyright notice and this permission notice shall be included in all copies or substantial portions of the
 * Software.
 * 
 * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE
 * WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR
 * COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR
 * OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
 ******************************************************************************/
package org.roche.antibody.ui.actions.menu;

import java.awt.event.ActionEvent;
import java.io.File;

import javax.swing.Action;
import javax.swing.ImageIcon;
import javax.swing.JFileChooser;
import javax.swing.JFrame;
import javax.swing.JOptionPane;
import javax.xml.bind.JAXBException;

import org.apache.commons.io.FilenameUtils;
import org.roche.antibody.model.antibody.Antibody;
import org.roche.antibody.model.antibody.AntibodyContainer;
import org.roche.antibody.services.ConfigFileService;
import org.roche.antibody.services.antibody.AntibodyService;
import org.roche.antibody.services.xml.XmlAntibodyService;
import org.roche.antibody.ui.components.AntibodyEditorAccess;
import org.roche.antibody.ui.filechooser.AntibodyFileChooser;
import org.roche.antibody.ui.filechooser.XmlFileChooser;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;

/**
 * {@code AntibodyLoadXmlAction}
 * 
 * Action for loading an XML Antibody-File from the Mainmenu
 * 
 * @author <b>Stefan Klostermann:</b> Stefan DOT Klostermann AT roche DOT com, Roche Pharma Research and Early
 *         Development - Informatics, Roche Innovation Center Penzberg
 * @author <b>Stefan Zilch:</b> stefan_dieter DOT zilch AT contractors DOT roche DOT com
 * 
 * @version $Id: AntibodySaveXmlAction.java 15173 2015-03-05 16:18:13Z schirmb $
 */
public class AntibodySaveXmlAction extends AbstractEditorAction {

    /** */
    private static final long serialVersionUID = 8270310476746408309L;

    /** The Logger for this class */
    private static final Logger LOG = LoggerFactory.getLogger(AntibodySaveXmlAction.class);

    public static final String NAME = "Save Antibody To XML...";

    public static final String SHORT_DESCRIPTION = "Saves antibody to disk.";

    public static final String IMAGE_PATH = "disk.png";

    private XmlAntibodyService xmlService = XmlAntibodyService.getInstance();

    public AntibodySaveXmlAction(JFrame parentFrame) {
        super(parentFrame, NAME);

        ImageIcon icon = getImageIcon(IMAGE_PATH);
        if (icon != null) {
            this.putValue(Action.SMALL_ICON, icon);
        }
        this.putValue(Action.SHORT_DESCRIPTION, SHORT_DESCRIPTION);
    }

    public void actionPerformed(ActionEvent e) {

        XmlFileChooser dialog = new XmlFileChooser();
        if (dialog.showSaveDialog(super.getParentFrame()) == JFileChooser.APPROVE_OPTION) {
            File abFile = dialog.getSelectedFile();
            String newPath = FilenameUtils.removeExtension(abFile.getAbsolutePath());
            abFile = new File(newPath + AntibodyFileChooser.XML_EXTENSION);
            AntibodyContainer abContainer = new AntibodyContainer();
            try {
                Antibody ab = AntibodyEditorAccess.getInstance().getAntibodyEditorPane().getAntibody();
                ab.setDomainLibraryPath(ConfigFileService.getInstance().getDomainLibFilename());

                abContainer.setAntibody(ab);
                abContainer.setHelmCode(AntibodyService.getInstance().toHELMString(ab));
                xmlService.marshal(abContainer, abFile);
            } catch (JAXBException e1) {
                JOptionPane.showMessageDialog(super.getParentFrame(), "Could not save Antibody! Please try again",
                        "Error", JOptionPane.ERROR_MESSAGE);
                LOG.error("Could not save Antibody-XML to disk! {}", e1);
            }
        }
    }

}