org.prom5.analysis.performance.sequence.Pattern.java Source code

Java tutorial

Introduction

Here is the source code for org.prom5.analysis.performance.sequence.Pattern.java

Source

/***********************************************************
 *      This software is part of the ProM package          *
 *             http://www.processmining.org/               *
 *                                                         *
 *            Copyright (c) 2003-2006 TU/e Eindhoven       *
 *                and is licensed under the                *
 *            Common Public License, Version 1.0           *
 *        by Eindhoven University of Technology            *
 *           Department of Information Systems             *
 *                 http://is.tm.tue.nl                     *
 *                                                         *
 **********************************************************/

package org.prom5.analysis.performance.sequence;

import java.awt.Color;
import java.awt.GradientPaint;
import java.awt.Graphics2D;
import java.awt.Paint;
import java.awt.geom.Rectangle2D;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.HashSet;
import java.util.ListIterator;

import org.apache.commons.math.stat.descriptive.DescriptiveStatistics;

/**
 *  Class needed to store and use pattern information
 *
 * @author Peter T.G. Hornix (p.t.g.hornix@student.tue.nl)
 */
public class Pattern {
    /**
     * Color in which the pattern is drawn
    */
    private Color color = Color.WHITE;
    /**
     * ArrayList containing the sequences that follow this pattern
     */
    private ArrayList sequenceList;
    /**
     * ArrayList containing the data-element blocks in the order they appear in
     * the first sequence of the pattern.
     * (sorted first on begin time, then on end time, then on data-element)
     */
    private ArrayList sortedDataEltBlocks;
    /**
     * if strict-equivalent pattern type selected:
     * ArrayList containing the data-element blocks in the order they appear in
     * the first sequence of the pattern.
     * (sorted first on end time, then on begin time, then on data-element)
     */
    private ArrayList sortedOnEndDataEltBlocks;
    /**
     * ArrayList containing the arrows of the first sequence of the pattern,
     * sorted on source, destination, begin time and finally on end time
     */
    private ArrayList arrowList;
    /**
     * statistics to calculate (avg, min, max, stdev etc) throughput times
     */
    private DescriptiveStatistics timeStatistics = DescriptiveStatistics.newInstance();
    /**
     * the number of the pattern (obviously)
     */
    private int patternNumber = 0;

    /**
     * Constructor to initialize pattern
     * @param sq Sequence
     */
    public Pattern(Sequence sq) {
        sequenceList = new ArrayList();
        sequenceList.add(sq);
        sortedDataEltBlocks = new ArrayList();
        arrowList = new ArrayList();
        ArrayList sequenceBlocks = sq.getSortedDataEltBlocks();
        for (int i = 0; i < sequenceBlocks.size(); i++) {
            SequenceBlock block = (SequenceBlock) sequenceBlocks.get(i);
            long beginTime = block.getBeginTimestamp().getTime() - sq.getBeginDate().getTime();
            long endTime = block.getEndTimestamp().getTime() - sq.getBeginDate().getTime();
            PatternBlock patBlock = new PatternBlock(beginTime, endTime, block.getDataElement());
            patBlock.setSimilarIndex(block.getSimilarIndex());
            sortedDataEltBlocks.add(patBlock);
        }
        ArrayList arrows = sq.getArrowList();
        for (int i = 0; i < arrows.size(); i++) {
            SequenceArrow arrow = (SequenceArrow) arrows.get(i);
            long beginTime = arrow.getBeginTimestamp().getTime() - sq.getBeginDate().getTime();
            long endTime = arrow.getEndTimestamp().getTime() - sq.getBeginDate().getTime();
            PatternArrow patArrow = new PatternArrow(beginTime, endTime, arrow.getSource(), arrow.getDestination());
            patArrow.setSourceBlock(arrow.getSourceBlock());
            patArrow.setDestinationBlock(arrow.getDestinationBlock());
            arrowList.add(patArrow);
        }
        sortedOnEndDataEltBlocks = sq.getSortedOnEndDataEltBlocks();
        color = sq.getColor();
    }

    /////////////////////////COMPARISON METHODS////////////////////////
    /**
     * Compares the sequence to the pattern, returns true if they match
     * @param sq Sequence
     * @param isStrict boolean
     * @return boolean
     */
    public boolean compareToSequence(Sequence sq, boolean isStrict) {
        //compare against the first sequence of this pattern
        if (!equalArrows(arrowList, sq.getArrowList(), isStrict)
                || !equalParts(sortedDataEltBlocks, sq.getSortedDataEltBlocks(), isStrict)) {
            //the sequences do not have the same arrows or data-element blocks
            return false;
        } else {
            if (isStrict && !equalParts(sortedOnEndDataEltBlocks, sq.getSortedOnEndDataEltBlocks(), isStrict)) {
                //if strict selected, then data-element blocks sorted on end times should be equal as well
                return false;
            } else {
                //sequences have the same arrows and data-element blocks
                return true;
            }
        }
    }

    /**
     * Checks whether same arrows appear and whether they appear in the same order.
     * If this is the case, then: 'the arrows are equal' and true is returned.
     * @param firstArrows ArrayList
     * @param secondArrows ArrayList
     * @param isStrict boolean
     * @return boolean
     */
    private boolean equalArrows(ArrayList firstArrows, ArrayList secondArrows, boolean isStrict) {
        if (firstArrows.size() != secondArrows.size()) {
            return false;
        } else {
            for (int i = 0; i < firstArrows.size(); i++) {
                PatternArrow firstArrow = (PatternArrow) firstArrows.get(i);
                SequenceArrow secondArrow = (SequenceArrow) secondArrows.get(i);
                if (!firstArrow.getSource().equals(secondArrow.getSource())
                        || !firstArrow.getDestination().equals(secondArrow.getDestination())) {
                    if (firstArrow.getSourceBlock().getSimilarIndex() != secondArrow.getSourceBlock()
                            .getSimilarIndex()
                            || firstArrow.getDestinationBlock().getSimilarIndex() != secondArrow
                                    .getDestinationBlock().getSimilarIndex()) {
                        //arrows with different source or destination data-element block
                        return false;
                    }
                }
            }
            return true;
        }
    }

    /**
     * Checks whether the input arraylists contain the same data-element blocks
     * @param parts0 ArrayList : sorted array with data-element blocks
     * @param parts1 ArrayList : sorted array with data-element blocks
     * @param isStrict boolean : true if strict-equivalence is used
     * @return boolean
     */
    private boolean equalParts(ArrayList parts0, ArrayList parts1, boolean isStrict) {
        if (parts0.size() != parts1.size()) {
            //different sizes, so unequal parts
            return false;
        } else {
            //run through sorted lists of data-element blocks
            for (int i = 0; i < parts0.size(); i++) {
                //obtain data-element block i of both lists
                DataElementBlock firstBlock = (DataElementBlock) parts0.get(i);
                SequenceBlock secondBlock = (SequenceBlock) parts1.get(i);
                if (!firstBlock.getDataElement().equals(secondBlock.getDataElement())) {
                    //different data-elements, so different blocks
                    return false;
                } else if (!isStrict) {
                    //check if both data-element blocks i, have the same data-element blocks
                    //following them
                    for (int j = 0; j < parts0.size(); j++) {
                        DataElementBlock afterFirst = (DataElementBlock) parts0.get(j);
                        SequenceBlock afterSecond = (SequenceBlock) parts1.get(j);
                        if (firstBlock instanceof PatternBlock && afterFirst instanceof PatternBlock) {
                            if (((PatternBlock) afterFirst).getAverageBeginTime() > ((PatternBlock) firstBlock)
                                    .getAverageEndTime()
                                    && !(afterSecond.getBeginTimestamp().getTime() >= secondBlock.getEndTimestamp()
                                            .getTime())) {
                                //blocks don't appear in the same order
                                return false;
                            }
                        } else if (firstBlock instanceof SequenceBlock && afterFirst instanceof SequenceBlock) {
                            if (((SequenceBlock) afterFirst).getBeginTimestamp()
                                    .getTime() > ((SequenceBlock) firstBlock).getBeginTimestamp().getTime()
                                    && !(afterSecond.getBeginTimestamp().getTime() >= secondBlock.getEndTimestamp()
                                            .getTime())) {
                                //blocks don't appear in the same order
                                return false;
                            }
                        } else {
                            return false;
                        }
                    }
                }
            }
            return true;
        }
    }

    ////////////////////TIME CALCULATION METHOD/////////////////////
    /**
     * Calculates throughput times
     */
    public void calculateTimes() {
        timeStatistics.clear();
        ListIterator lit = sequenceList.listIterator();
        while (lit.hasNext()) {
            Sequence current = (Sequence) lit.next();
            double temp = current.getThroughputTime();
            if (temp >= 0) {
                timeStatistics.addValue(temp);
            }
        }
    }

    ////////////////////////////GET, SET AND ADD METHODS///////////////////
    /**
     * Adds sequence sq to the sequenceList, which contains all sequences that
     * follow this pattern
     * @param sq Sequence
     */
    public void addSequence(Sequence sq) {
        try {
            sequenceList.add(sq);
            for (int i = 0; i < sortedDataEltBlocks.size(); i++) {
                PatternBlock block = (PatternBlock) sortedDataEltBlocks.get(i);
                SequenceBlock bl = (SequenceBlock) sq.getSortedDataEltBlocks().get(i);
                long beginTime = bl.getBeginTimestamp().getTime() - sq.getBeginDate().getTime();
                long endTime = bl.getEndTimestamp().getTime() - sq.getBeginDate().getTime();
                block.addBeginTime(beginTime);
                block.addEndTime(endTime);
            }
            for (int i = 0; i < arrowList.size(); i++) {
                PatternArrow arrow = (PatternArrow) arrowList.get(i);
                SequenceArrow ar = (SequenceArrow) sq.getArrowList().get(i);
                long beginTime = ar.getBeginTimestamp().getTime() - sq.getBeginDate().getTime();
                long endTime = ar.getEndTimestamp().getTime() - sq.getBeginDate().getTime();
                arrow.addBeginTime(beginTime);
                arrow.addEndTime(endTime);
            }
        } catch (NullPointerException npe) {
            //should not occur
        }
    }

    /**
     * Returns the number of sequences that follow this pattern
     * @return int
     */
    public int getFrequency() {
        return sequenceList.size();
    }

    /**
     * Returns the average time spend in data-element part with number 'number'
     *
     * @param number int
     * @return double
     */
    public double getTimePart(int number) {
        PatternBlock block = (PatternBlock) sortedDataEltBlocks.get(number);
        return block.getTimeIn();
    }

    /**
     * Returns the average time between the beginning of a sequence of this pattern
     * and the Timestamp at which data-element part with number 'number' starts
     * @param number int
     * @return double
     */
    public double getAvgTimeToBegin(int number) {
        PatternBlock block = (PatternBlock) sortedDataEltBlocks.get(number);
        return block.getAverageBeginTime();
    }

    /**
     * Returns the average time between the beginning of a sequence of this pattern
     * and the Timestamp at which arrow number 'number' began and ended
     * @param number int
     * @return double
     */
    public double[] getArrowPosition(int number) {
        PatternArrow arrow = (PatternArrow) arrowList.get(number);
        double[] returnArray = new double[2];
        returnArray[0] = arrow.getAverageBeginTime();
        returnArray[1] = arrow.getAverageEndTime();
        return returnArray;
    }

    /**
     * Returns the sorted list of data-element blocks
     * @return ArrayList
     */
    public ArrayList getSortedDataElementBlocks() {
        return sortedDataEltBlocks;
    }

    /**
     * Returns the sorted arrows of this pattern
     * @return ArrayList
     */
    public ArrayList getArrowList() {
        return arrowList;
    }

    /**
     * Returns the color of the pattern
     * @return Color
     */
    public Color getColor() {
        return color;
    }

    /**
     * Returns the number of the pattern
     * @return int
     */
    public int getPatternNumber() {
        return patternNumber;
    }

    /**
     * Sets the number of the pattern
     * @param patternNumber int
     */
    public void setPatternNumber(int patternNumber) {
        this.patternNumber = patternNumber;
    }

    /**
     * Returns the set of (names of) process instances, which follow this pattern
     * @return HashSet
     */
    public HashSet getPiNames() {
        HashSet piNames = new HashSet();
        for (int i = 0; i < sequenceList.size(); i++) {
            Sequence sequence = (Sequence) sequenceList.get(i);
            piNames.add(sequence.getPiName());
        }
        return piNames;
    }

    /**
     * Returns mean throughput time
     * @return double
     */
    public double getMeanThroughputTime() {
        return timeStatistics.getMean();
    }

    /**
     * Returns minimum throughput time
     * @return double
     */
    public double getMinThroughputTime() {
        return timeStatistics.getMin();
    }

    /**
     * Returns maximum throughput time
     * @return double
     */
    public double getMaxThroughputTime() {
        return timeStatistics.getMax();
    }

    /**
     * Returns standard deviation in throughput time
     * @return double
     */
    public double getStdevThroughputTime() {
        return timeStatistics.getStandardDeviation();
    }

    /////////////////////////////DRAW-RELATED METHODS/////////////////////////
    /**
     *
     * @param patternNumber int
     * @param startY int
     * @param timePerPixel double
     */
    public void initializeDrawPattern(int patternNumber, int startY, double timePerPixel) {
        this.patternNumber = patternNumber;
        for (int i = 0; i < sortedDataEltBlocks.size(); i++) {
            double timeLength = getTimePart(i) / timePerPixel;
            DataElementBlock block = (DataElementBlock) sortedDataEltBlocks.get(i);
            double startAt = startY + getAvgTimeToBegin(i) / timePerPixel;
            block.setStartAt(startAt);
            block.setEndAt(startAt + timeLength);
        }
        ListIterator arrows = arrowList.listIterator();
        int num = 0;
        while (arrows.hasNext()) {
            Arrow arrow = (Arrow) arrows.next();
            double[] arrowPosition = getArrowPosition(num++);
            double beginPosition = arrowPosition[0] / timePerPixel;
            double endPosition = arrowPosition[1] / timePerPixel;
            if (beginPosition >= 0 && endPosition >= 0) {
                beginPosition += startY;
                endPosition += startY;
                arrow.setStartAt(beginPosition);
                arrow.setEndAt(endPosition);
            }
        }
    }

    /**
     * Draws the pattern in the pattern diagram
     * @param lifeLines HashMap
     * @param startY int
     * @param g Graphics2D
     */
    public void drawPattern(HashMap lifeLines, int startY, Graphics2D g) {
        g.setColor(Color.BLACK);
        g.drawString("Pattern " + patternNumber + ":", 10, startY + 5);
        g.setColor(color);
        //draw data-element blocks
        for (int i = 0; i < sortedDataEltBlocks.size(); i++) {
            DataElementBlock block = (DataElementBlock) sortedDataEltBlocks.get(i);
            try {
                block.drawBlock(((LifeLine) lifeLines.get(block.getDataElement())).getMiddle() - 10, color, g);
            } catch (NullPointerException ex) {
            }
        }
        //draw arrows
        ListIterator arrows = arrowList.listIterator();
        while (arrows.hasNext()) {
            Arrow arrow = (Arrow) arrows.next();
            arrow.drawArrow(lifeLines, color, g);
        }
    }

    /**
     * Draws a rectangle of width 20, height length and starting point (startX,startY)
     * in the northwest corner of the rectangle. In case logicSteps is true, the
     * height is 10.
     * @param startX double
     * @param startY double
     * @param length double
     * @param logicSteps boolean
     * @param g Graphics2D
     */
    public void drawRectangle(double startX, double startY, double length, boolean logicSteps, Graphics2D g) {
        Rectangle2D r = new Rectangle2D.Double(startX, startY, 20, length);
        if (logicSteps) {
            r = new Rectangle2D.Double(startX, startY, 20, 10);
        }
        Color initialColor = g.getColor();
        Paint initialPaint = g.getPaint();
        GradientPaint towhite = new GradientPaint(((Double) startX).floatValue(), ((Double) startY).floatValue(),
                initialColor, ((Double) startX).floatValue() + 20, ((Double) (startY)).floatValue(), Color.WHITE);
        g.setPaint(towhite);
        g.fill(r);
        g.setPaint(initialPaint);
        g.setColor(Color.BLACK);
        g.draw(r);
        g.setColor(initialColor);
    }

}