Java tutorial
/* * ProActive Parallel Suite(TM): * The Open Source library for parallel and distributed * Workflows & Scheduling, Orchestration, Cloud Automation * and Big Data Analysis on Enterprise Grids & Clouds. * * Copyright (c) 2007 - 2017 ActiveEon * Contact: contact@activeeon.com * * This library is free software: you can redistribute it and/or * modify it under the terms of the GNU Affero General Public License * as published by the Free Software Foundation: version 3 of * the License. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Affero General Public License for more details. * * You should have received a copy of the GNU Affero General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. * * If needed, contact us to obtain a release under GPL Version 2 or 3 * or a different license than the AGPL. */ package org.ow2.parengine.util; import java.io.File; import java.io.FileNotFoundException; import java.lang.reflect.Field; import java.lang.reflect.Method; import java.util.Arrays; import org.apache.commons.lang3.StringUtils; /** * @author ActiveEon Team */ public class RLibPathConfigurator { public static final boolean isWindows = System.getProperty("os.name").toLowerCase().contains("win"); public static final boolean isMac = System.getProperty("os.name").toLowerCase().contains("mac"); /** * Tries to locate from registry or usual paths then adds rhome to the * library path */ public static void configureLibraryPath() { String rHome = System.getenv("R_HOME"); boolean isBlank = StringUtils.isBlank(rHome); if (isWindows) { // On Windows try to locate from Windows Registry if (isBlank) { try { rHome = WinRegistry.readString(WinRegistry.HKEY_LOCAL_MACHINE, // HKEY "SOFTWARE\\R-core\\R", // Key "InstallPath"); if (!(new File(rHome).exists())) { throw new FileNotFoundException( "The path " + rHome + " given by the Windows Registry key does not exists"); } RLibPathConfigurator.setEnvVar("R_HOME", rHome); } catch (Exception e) { throw new IllegalStateException( "Unable to locate R homedir from Windows Registry, it seems R is not installed, please define the R_HOME env variable", e); } } dynamicAddLibraryPathWindows(rHome); } else if (isMac) { // On Mac try to locate from usual install path if (isBlank) { rHome = "/Library/Frameworks/R.framework/Resources"; try { if (!(new File(rHome).exists())) { throw new FileNotFoundException("The usual " + rHome + " path does not exists"); } RLibPathConfigurator.setEnvVar("R_HOME", rHome); } catch (Exception e) { throw new IllegalStateException( "Unable to locate R homedir, the R_HOME env variable must be defined", e); } } dynamicAddLibraryPathMac(rHome); } else { // On Linux try to locate from usual install path if (isBlank) { rHome = "/usr/lib/R"; try { if (!(new File(rHome).exists())) { throw new FileNotFoundException("The usual " + rHome + " path does not exists"); } RLibPathConfigurator.setEnvVar("R_HOME", rHome); } catch (Exception e) { throw new IllegalStateException( "Unable to locate R homedir, the R_HOME env variable must be defined", e); } } dynamicAddLibraryPathLinux(rHome); } } private static void dynamicAddLibraryPathWindows(final String rHome) { String fs = java.io.File.separator; // Get the architecture of the jvm not the os String sunArchDataModel = System.getProperty("sun.arch.data.model"); String rLibraryPath = rHome + fs + "bin" + fs; String packagesLibraryPath = rHome + fs + "library"; // If R_LIBS env var is defined locate rJava there String rLibs = System.getenv("R_LIBS"); if (!StringUtils.isBlank(rLibs)) { packagesLibraryPath = rLibs; } String rJavaPath = packagesLibraryPath + fs + "rJava"; if (!new File(rJavaPath).exists()) { throw new IllegalStateException( "Unable to locate rJava in " + rJavaPath + " the R_LIBS env variable must be defined"); } String jriLibraryPath = rJavaPath + fs + "jri" + fs; // Use correct libraries depending on jvm architecture if ("32".equals(sunArchDataModel)) { rLibraryPath += "i386"; jriLibraryPath += "i386"; } else if ("64".equals(sunArchDataModel)) { rLibraryPath += "x64"; jriLibraryPath += "x64"; } // Dynamically add to java library path try { RLibPathConfigurator.addLibraryPath(jriLibraryPath); } catch (Exception e) { throw new IllegalStateException("Unable to add jri to library path " + jriLibraryPath, e); } // Update the current process 'Path' environment variable try { String varValue = System.getenv("Path"); RLibPathConfigurator.setEnvVar("Path", varValue + File.pathSeparator + rLibraryPath); } catch (Exception e) { throw new IllegalStateException("Unable to add R lib to Path environment variable " + rLibraryPath, e); } } private static void dynamicAddLibraryPathMac(final String rHome) { String fs = java.io.File.separator; String packagesLibraryPath = rHome + fs + "library"; // If R_LIBS env var is defined locate rJava there String rLibs = System.getenv("R_LIBS"); if (!StringUtils.isBlank(rLibs)) { if (new File(rLibs + fs + "rJava").exists()) { packagesLibraryPath = rLibs; } } String rJavaPath = packagesLibraryPath + fs + "rJava"; if (!new File(rJavaPath).exists()) { throw new IllegalStateException( "Unable to locate rJava package in " + rJavaPath + " the R_LIBS env variable must be defined"); } // Dynamically add to java library path String jriLibraryPath = rJavaPath + fs + "jri" + fs; try { RLibPathConfigurator.addLibraryPath(jriLibraryPath); } catch (Exception e) { throw new IllegalStateException("Unable to add jri to library path " + jriLibraryPath, e); } } private static void dynamicAddLibraryPathLinux(final String rHome) { String fs = java.io.File.separator; String packagesLibraryPath = rHome + fs + "site-library"; // If R_LIBS env var is defined locate rJava there String rLibs = System.getenv("R_LIBS"); if (!StringUtils.isBlank(rLibs)) { if (new File(rLibs + fs + "rJava").exists()) { packagesLibraryPath = rLibs; } } String rJavaPath = packagesLibraryPath + fs + "rJava"; if (!new File(rJavaPath).exists()) { throw new IllegalStateException( "Unable to locate rJava package in " + rJavaPath + " the R_LIBS env variable must be defined"); } // Dynamically add to java library path String jriLibraryPath = rJavaPath + fs + "jri" + fs; try { RLibPathConfigurator.addLibraryPath(jriLibraryPath); } catch (Exception e) { throw new IllegalStateException("Unable to add jri to library path " + jriLibraryPath, e); } } /** * Adds the specified path to the java library path * * @param pathToAdd the path to add * @throws Exception */ public static void addLibraryPath(String pathToAdd) throws Exception { final Field usrPathsField = ClassLoader.class.getDeclaredField("usr_paths"); usrPathsField.setAccessible(true); // get array of paths final String[] paths = (String[]) usrPathsField.get(null); // check if the path to add is already present for (String path : paths) { if (path.equals(pathToAdd)) { return; } } // add the new path final String[] newPaths = Arrays.copyOf(paths, paths.length + 1); newPaths[newPaths.length - 1] = pathToAdd; usrPathsField.set(null, newPaths); } private static void setEnvVar(String var, String value) { Class<?> clazz; try { clazz = Class.forName("org.ow2.proactive.utils.Environment"); } catch (Exception e) { // This can occur for scheduler > 3.4.0 try { clazz = Class.forName("org.ow2.proactive.scheduler.util.process.Environment"); } catch (Exception ee) { throw new IllegalStateException( "Unable to load Environement class required to set the env variable " + var, e); } } try { Method method = clazz.getMethod("setenv", String.class, String.class, Boolean.TYPE); method.invoke(null, var, value, true); } catch (Exception e) { throw new IllegalStateException("Unable to set the env variable " + var, e); } } }