org.icgc.dcc.submission.validation.key.KVTestUtils.java Source code

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Here is the source code for org.icgc.dcc.submission.validation.key.KVTestUtils.java

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/*
 * Copyright (c) 2014 The Ontario Institute for Cancer Research. All rights reserved.                             
 *                                                                                                               
 * This program and the accompanying materials are made available under the terms of the GNU Public License v3.0.
 * You should have received a copy of the GNU General Public License along with                                  
 * this program. If not, see <http://www.gnu.org/licenses/>.                                                     
 *                                                                                                               
 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY                           
 * EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES                          
 * OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT                           
 * SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,                                
 * INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED                          
 * TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;                               
 * OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER                              
 * IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN                         
 * ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 */
package org.icgc.dcc.submission.validation.key;

import static org.icgc.dcc.core.util.Joiners.PATH;

import java.io.File;
import java.io.IOException;

import lombok.val;
import lombok.extern.slf4j.Slf4j;

import org.apache.hadoop.fs.FileSystem;
import org.apache.hadoop.fs.Path;

/**
 * TODO
 */
@Slf4j
public class KVTestUtils {

    /**
     * Test data.
     */
    public static final String TEST_DIR = "src/test/resources/fixtures/validation/key";
    public static final String FS_DIR = PATH.join(TEST_DIR, "fs");
    public static final String REFERENCE_FILE_NAME = "reference.jsons";

    public static void copyDirectory(FileSystem fileSystem, File sourceDir, Path targetDir) throws IOException {
        for (val file : sourceDir.listFiles()) {
            val source = new Path(file.toURI());
            val target = new Path(targetDir, file.getName());

            log.info("Copying file: from '{}' to '{}'", source, target);
            fileSystem.copyFromLocalFile(source, target);
        }
    }
}