Java tutorial
package org.hl7.fhir.dstu2016may.hapi.rest.server; import static org.apache.commons.lang3.StringUtils.isBlank; /* * #%L * HAPI FHIR Structures - DSTU2 (FHIR v1.0.0) * %% * Copyright (C) 2014 - 2015 University Health Network * %% * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * See the License for the specific language governing permissions and * limitations under the License. * #L% */ import static org.apache.commons.lang3.StringUtils.isNotBlank; import java.util.ArrayList; import java.util.Collections; import java.util.Comparator; import java.util.HashMap; import java.util.HashSet; import java.util.IdentityHashMap; import java.util.List; import java.util.Map; import java.util.Map.Entry; import java.util.Set; import java.util.TreeMap; import java.util.TreeSet; import javax.servlet.ServletContext; import javax.servlet.http.HttpServletRequest; import org.apache.commons.lang3.StringUtils; import org.hl7.fhir.dstu2016may.model.Conformance; import org.hl7.fhir.dstu2016may.model.Conformance.ConditionalDeleteStatus; import org.hl7.fhir.dstu2016may.model.Conformance.ConformanceRestComponent; import org.hl7.fhir.dstu2016may.model.Conformance.ConformanceRestResourceComponent; import org.hl7.fhir.dstu2016may.model.Conformance.ConformanceRestResourceSearchParamComponent; import org.hl7.fhir.dstu2016may.model.Conformance.ConformanceStatementKind; import org.hl7.fhir.dstu2016may.model.Conformance.ResourceInteractionComponent; import org.hl7.fhir.dstu2016may.model.Conformance.RestfulConformanceMode; import org.hl7.fhir.dstu2016may.model.Conformance.SystemRestfulInteraction; import org.hl7.fhir.dstu2016may.model.Conformance.TypeRestfulInteraction; import org.hl7.fhir.dstu2016may.model.Conformance.UnknownContentCode; import org.hl7.fhir.dstu2016may.model.DateTimeType; import org.hl7.fhir.dstu2016may.model.Enumerations.ConformanceResourceStatus; import org.hl7.fhir.dstu2016may.model.Enumerations.ResourceType; import org.hl7.fhir.dstu2016may.model.IdType; import org.hl7.fhir.dstu2016may.model.OperationDefinition; import org.hl7.fhir.dstu2016may.model.OperationDefinition.OperationDefinitionParameterComponent; import org.hl7.fhir.dstu2016may.model.OperationDefinition.OperationKind; import org.hl7.fhir.dstu2016may.model.OperationDefinition.OperationParameterUse; import org.hl7.fhir.dstu2016may.model.Reference; import org.hl7.fhir.exceptions.FHIRException; import org.hl7.fhir.instance.model.api.IBaseResource; import ca.uhn.fhir.context.FhirVersionEnum; import ca.uhn.fhir.context.RuntimeResourceDefinition; import ca.uhn.fhir.context.RuntimeSearchParam; import ca.uhn.fhir.parser.DataFormatException; import ca.uhn.fhir.rest.annotation.IdParam; import ca.uhn.fhir.rest.annotation.Initialize; import ca.uhn.fhir.rest.annotation.Metadata; import ca.uhn.fhir.rest.annotation.Read; import ca.uhn.fhir.rest.method.BaseMethodBinding; import ca.uhn.fhir.rest.method.DynamicSearchMethodBinding; import ca.uhn.fhir.rest.method.IParameter; import ca.uhn.fhir.rest.method.OperationMethodBinding; import ca.uhn.fhir.rest.method.OperationMethodBinding.ReturnType; import ca.uhn.fhir.rest.method.OperationParameter; import ca.uhn.fhir.rest.method.RestSearchParameterTypeEnum; import ca.uhn.fhir.rest.method.SearchMethodBinding; import ca.uhn.fhir.rest.method.SearchParameter; import ca.uhn.fhir.rest.server.Constants; import ca.uhn.fhir.rest.server.IServerConformanceProvider; import ca.uhn.fhir.rest.server.ResourceBinding; import ca.uhn.fhir.rest.server.RestfulServer; import ca.uhn.fhir.rest.server.RestulfulServerConfiguration; import ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException; /** * Server FHIR Provider which serves the conformance statement for a RESTful server implementation * * <p> * Note: This class is safe to extend, but it is important to note that the same instance of {@link Conformance} is always returned unless {@link #setCache(boolean)} is called with a value of * <code>false</code>. This means that if you are adding anything to the returned conformance instance on each call you should call <code>setCache(false)</code> in your provider constructor. * </p> */ public class ServerConformanceProvider implements IServerConformanceProvider<Conformance> { private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory .getLogger(ServerConformanceProvider.class); private boolean myCache = true; private volatile Conformance myConformance; private IdentityHashMap<OperationMethodBinding, String> myOperationBindingToName; private HashMap<String, List<OperationMethodBinding>> myOperationNameToBindings; private String myPublisher = "Not provided"; private RestulfulServerConfiguration myServerConfiguration; /* * Add a no-arg constructor and seetter so that the ServerConfirmanceProvider can be Spring-wired with the RestfulService avoiding the potential reference cycle that would happen. */ public ServerConformanceProvider() { super(); } public ServerConformanceProvider(RestfulServer theRestfulServer) { this.myServerConfiguration = theRestfulServer.createConfiguration(); } public ServerConformanceProvider(RestulfulServerConfiguration theServerConfiguration) { this.myServerConfiguration = theServerConfiguration; } private void checkBindingForSystemOps(ConformanceRestComponent rest, Set<SystemRestfulInteraction> systemOps, BaseMethodBinding<?> nextMethodBinding) { if (nextMethodBinding.getRestOperationType() != null) { String sysOpCode = nextMethodBinding.getRestOperationType().getCode(); if (sysOpCode != null) { SystemRestfulInteraction sysOp; try { sysOp = SystemRestfulInteraction.fromCode(sysOpCode); } catch (FHIRException e) { return; } if (sysOp == null) { return; } if (systemOps.contains(sysOp) == false) { systemOps.add(sysOp); rest.addInteraction().setCode(sysOp); } } } } private Map<String, List<BaseMethodBinding<?>>> collectMethodBindings() { Map<String, List<BaseMethodBinding<?>>> resourceToMethods = new TreeMap<String, List<BaseMethodBinding<?>>>(); for (ResourceBinding next : myServerConfiguration.getResourceBindings()) { String resourceName = next.getResourceName(); for (BaseMethodBinding<?> nextMethodBinding : next.getMethodBindings()) { if (resourceToMethods.containsKey(resourceName) == false) { resourceToMethods.put(resourceName, new ArrayList<BaseMethodBinding<?>>()); } resourceToMethods.get(resourceName).add(nextMethodBinding); } } for (BaseMethodBinding<?> nextMethodBinding : myServerConfiguration.getServerBindings()) { String resourceName = ""; if (resourceToMethods.containsKey(resourceName) == false) { resourceToMethods.put(resourceName, new ArrayList<BaseMethodBinding<?>>()); } resourceToMethods.get(resourceName).add(nextMethodBinding); } return resourceToMethods; } private DateTimeType conformanceDate() { String buildDate = myServerConfiguration.getConformanceDate(); if (buildDate != null) { try { return new DateTimeType(buildDate); } catch (DataFormatException e) { // fall through } } return DateTimeType.now(); } private String createOperationName(OperationMethodBinding theMethodBinding) { StringBuilder retVal = new StringBuilder(); if (theMethodBinding.getResourceName() != null) { retVal.append(theMethodBinding.getResourceName()); } retVal.append('-'); if (theMethodBinding.isCanOperateAtInstanceLevel()) { retVal.append('i'); } if (theMethodBinding.isCanOperateAtServerLevel()) { retVal.append('s'); } retVal.append('-'); // Exclude the leading $ retVal.append(theMethodBinding.getName(), 1, theMethodBinding.getName().length()); return retVal.toString(); } /** * Gets the value of the "publisher" that will be placed in the generated conformance statement. As this is a mandatory element, the value should not be null (although this is not enforced). The * value defaults to "Not provided" but may be set to null, which will cause this element to be omitted. */ public String getPublisher() { return myPublisher; } @Override @Metadata public Conformance getServerConformance(HttpServletRequest theRequest) { if (myConformance != null && myCache) { return myConformance; } Conformance retVal = new Conformance(); retVal.setPublisher(myPublisher); retVal.setDateElement(conformanceDate()); retVal.setFhirVersion(FhirVersionEnum.DSTU2_1.getFhirVersionString()); retVal.setAcceptUnknown(UnknownContentCode.EXTENSIONS); // TODO: make this configurable - this is a fairly big // effort since the parser // needs to be modified to actually allow it retVal.getImplementation().setDescription(myServerConfiguration.getImplementationDescription()); retVal.setKind(ConformanceStatementKind.INSTANCE); retVal.getSoftware().setName(myServerConfiguration.getServerName()); retVal.getSoftware().setVersion(myServerConfiguration.getServerVersion()); retVal.addFormat(Constants.CT_FHIR_XML_NEW); retVal.addFormat(Constants.CT_FHIR_JSON_NEW); retVal.setStatus(ConformanceResourceStatus.ACTIVE); ConformanceRestComponent rest = retVal.addRest(); rest.setMode(RestfulConformanceMode.SERVER); Set<SystemRestfulInteraction> systemOps = new HashSet<SystemRestfulInteraction>(); Set<String> operationNames = new HashSet<String>(); Map<String, List<BaseMethodBinding<?>>> resourceToMethods = collectMethodBindings(); for (Entry<String, List<BaseMethodBinding<?>>> nextEntry : resourceToMethods.entrySet()) { if (nextEntry.getKey().isEmpty() == false) { Set<TypeRestfulInteraction> resourceOps = new HashSet<TypeRestfulInteraction>(); ConformanceRestResourceComponent resource = rest.addResource(); String resourceName = nextEntry.getKey(); RuntimeResourceDefinition def = myServerConfiguration.getFhirContext() .getResourceDefinition(resourceName); resource.getTypeElement().setValue(def.getName()); ServletContext servletContext = (ServletContext) (theRequest == null ? null : theRequest.getAttribute(RestfulServer.SERVLET_CONTEXT_ATTRIBUTE)); String serverBase = myServerConfiguration.getServerAddressStrategy() .determineServerBase(servletContext, theRequest); resource.getProfile().setReference((def.getResourceProfile(serverBase))); TreeSet<String> includes = new TreeSet<String>(); // Map<String, Conformance.RestResourceSearchParam> nameToSearchParam = new HashMap<String, // Conformance.RestResourceSearchParam>(); for (BaseMethodBinding<?> nextMethodBinding : nextEntry.getValue()) { if (nextMethodBinding.getRestOperationType() != null) { String resOpCode = nextMethodBinding.getRestOperationType().getCode(); if (resOpCode != null) { TypeRestfulInteraction resOp; try { resOp = TypeRestfulInteraction.fromCode(resOpCode); } catch (Exception e) { resOp = null; } if (resOp != null) { if (resourceOps.contains(resOp) == false) { resourceOps.add(resOp); resource.addInteraction().setCode(resOp); } if ("vread".equals(resOpCode)) { // vread implies read resOp = TypeRestfulInteraction.READ; if (resourceOps.contains(resOp) == false) { resourceOps.add(resOp); resource.addInteraction().setCode(resOp); } } if (nextMethodBinding.isSupportsConditional()) { switch (resOp) { case CREATE: resource.setConditionalCreate(true); break; case DELETE: if (nextMethodBinding.isSupportsConditionalMultiple()) { resource.setConditionalDelete(ConditionalDeleteStatus.MULTIPLE); } else { resource.setConditionalDelete(ConditionalDeleteStatus.SINGLE); } break; case UPDATE: resource.setConditionalUpdate(true); break; default: break; } } } } } checkBindingForSystemOps(rest, systemOps, nextMethodBinding); if (nextMethodBinding instanceof SearchMethodBinding) { handleSearchMethodBinding(rest, resource, resourceName, def, includes, (SearchMethodBinding) nextMethodBinding); } else if (nextMethodBinding instanceof DynamicSearchMethodBinding) { handleDynamicSearchMethodBinding(resource, def, includes, (DynamicSearchMethodBinding) nextMethodBinding); } else if (nextMethodBinding instanceof OperationMethodBinding) { OperationMethodBinding methodBinding = (OperationMethodBinding) nextMethodBinding; String opName = myOperationBindingToName.get(methodBinding); if (operationNames.add(opName)) { // Only add each operation (by name) once rest.addOperation().setName(methodBinding.getName().substring(1)) .setDefinition(new Reference("OperationDefinition/" + opName)); } } Collections.sort(resource.getInteraction(), new Comparator<ResourceInteractionComponent>() { @Override public int compare(ResourceInteractionComponent theO1, ResourceInteractionComponent theO2) { TypeRestfulInteraction o1 = theO1.getCode(); TypeRestfulInteraction o2 = theO2.getCode(); if (o1 == null && o2 == null) { return 0; } if (o1 == null) { return 1; } if (o2 == null) { return -1; } return o1.ordinal() - o2.ordinal(); } }); } for (String nextInclude : includes) { resource.addSearchInclude(nextInclude); } } else { for (BaseMethodBinding<?> nextMethodBinding : nextEntry.getValue()) { checkBindingForSystemOps(rest, systemOps, nextMethodBinding); if (nextMethodBinding instanceof OperationMethodBinding) { OperationMethodBinding methodBinding = (OperationMethodBinding) nextMethodBinding; String opName = myOperationBindingToName.get(methodBinding); if (operationNames.add(opName)) { ourLog.debug("Found bound operation: {}", opName); rest.addOperation().setName(methodBinding.getName().substring(1)) .setDefinition(new Reference("OperationDefinition/" + opName)); } } } } } myConformance = retVal; return retVal; } private void handleDynamicSearchMethodBinding(ConformanceRestResourceComponent resource, RuntimeResourceDefinition def, TreeSet<String> includes, DynamicSearchMethodBinding searchMethodBinding) { includes.addAll(searchMethodBinding.getIncludes()); List<RuntimeSearchParam> searchParameters = new ArrayList<RuntimeSearchParam>(); searchParameters.addAll(searchMethodBinding.getSearchParams()); sortRuntimeSearchParameters(searchParameters); if (!searchParameters.isEmpty()) { for (RuntimeSearchParam nextParameter : searchParameters) { String nextParamName = nextParameter.getName(); // String chain = null; String nextParamUnchainedName = nextParamName; if (nextParamName.contains(".")) { // chain = nextParamName.substring(nextParamName.indexOf('.') + 1); nextParamUnchainedName = nextParamName.substring(0, nextParamName.indexOf('.')); } String nextParamDescription = nextParameter.getDescription(); /* * If the parameter has no description, default to the one from the resource */ if (StringUtils.isBlank(nextParamDescription)) { RuntimeSearchParam paramDef = def.getSearchParam(nextParamUnchainedName); if (paramDef != null) { nextParamDescription = paramDef.getDescription(); } } ConformanceRestResourceSearchParamComponent param = resource.addSearchParam(); param.setName(nextParamName); // if (StringUtils.isNotBlank(chain)) { // param.addChain(chain); // } param.setDocumentation(nextParamDescription); // param.setType(nextParameter.getParamType()); } } } private void handleSearchMethodBinding(ConformanceRestComponent rest, ConformanceRestResourceComponent resource, String resourceName, RuntimeResourceDefinition def, TreeSet<String> includes, SearchMethodBinding searchMethodBinding) { includes.addAll(searchMethodBinding.getIncludes()); List<IParameter> params = searchMethodBinding.getParameters(); List<SearchParameter> searchParameters = new ArrayList<SearchParameter>(); for (IParameter nextParameter : params) { if ((nextParameter instanceof SearchParameter)) { searchParameters.add((SearchParameter) nextParameter); } } sortSearchParameters(searchParameters); if (!searchParameters.isEmpty()) { // boolean allOptional = searchParameters.get(0).isRequired() == false; // // OperationDefinition query = null; // if (!allOptional) { // RestOperation operation = rest.addOperation(); // query = new OperationDefinition(); // operation.setDefinition(new ResourceReferenceDt(query)); // query.getDescriptionElement().setValue(searchMethodBinding.getDescription()); // query.addUndeclaredExtension(false, ExtensionConstants.QUERY_RETURN_TYPE, new CodeDt(resourceName)); // for (String nextInclude : searchMethodBinding.getIncludes()) { // query.addUndeclaredExtension(false, ExtensionConstants.QUERY_ALLOWED_INCLUDE, new StringDt(nextInclude)); // } // } for (SearchParameter nextParameter : searchParameters) { String nextParamName = nextParameter.getName(); String chain = null; String nextParamUnchainedName = nextParamName; if (nextParamName.contains(".")) { chain = nextParamName.substring(nextParamName.indexOf('.') + 1); nextParamUnchainedName = nextParamName.substring(0, nextParamName.indexOf('.')); } String nextParamDescription = nextParameter.getDescription(); /* * If the parameter has no description, default to the one from the resource */ if (StringUtils.isBlank(nextParamDescription)) { RuntimeSearchParam paramDef = def.getSearchParam(nextParamUnchainedName); if (paramDef != null) { nextParamDescription = paramDef.getDescription(); } } ConformanceRestResourceSearchParamComponent param = resource.addSearchParam(); param.setName(nextParamUnchainedName); if (StringUtils.isNotBlank(chain)) { param.addChain(chain); } if (nextParameter.getParamType() == RestSearchParameterTypeEnum.REFERENCE) { for (String nextWhitelist : new TreeSet<String>(nextParameter.getQualifierWhitelist())) { if (nextWhitelist.startsWith(".")) { param.addChain(nextWhitelist.substring(1)); } } } param.setDocumentation(nextParamDescription); if (nextParameter.getParamType() != null) { param.getTypeElement().setValueAsString(nextParameter.getParamType().getCode()); } for (Class<? extends IBaseResource> nextTarget : nextParameter.getDeclaredTypes()) { RuntimeResourceDefinition targetDef = myServerConfiguration.getFhirContext() .getResourceDefinition(nextTarget); if (targetDef != null) { ResourceType code; try { code = ResourceType.fromCode(targetDef.getName()); } catch (FHIRException e) { code = null; } if (code != null) { param.addTarget(targetDef.getName()); } } } } } } @Initialize public void initializeOperations() { myOperationBindingToName = new IdentityHashMap<OperationMethodBinding, String>(); myOperationNameToBindings = new HashMap<String, List<OperationMethodBinding>>(); Map<String, List<BaseMethodBinding<?>>> resourceToMethods = collectMethodBindings(); for (Entry<String, List<BaseMethodBinding<?>>> nextEntry : resourceToMethods.entrySet()) { List<BaseMethodBinding<?>> nextMethodBindings = nextEntry.getValue(); for (BaseMethodBinding<?> nextMethodBinding : nextMethodBindings) { if (nextMethodBinding instanceof OperationMethodBinding) { OperationMethodBinding methodBinding = (OperationMethodBinding) nextMethodBinding; if (myOperationBindingToName.containsKey(methodBinding)) { continue; } String name = createOperationName(methodBinding); ourLog.debug("Detected operation: {}", name); myOperationBindingToName.put(methodBinding, name); if (myOperationNameToBindings.containsKey(name) == false) { myOperationNameToBindings.put(name, new ArrayList<OperationMethodBinding>()); } myOperationNameToBindings.get(name).add(methodBinding); } } } } @Read(type = OperationDefinition.class) public OperationDefinition readOperationDefinition(@IdParam IdType theId) { if (theId == null || theId.hasIdPart() == false) { throw new ResourceNotFoundException(theId); } List<OperationMethodBinding> sharedDescriptions = myOperationNameToBindings.get(theId.getIdPart()); if (sharedDescriptions == null || sharedDescriptions.isEmpty()) { throw new ResourceNotFoundException(theId); } OperationDefinition op = new OperationDefinition(); op.setStatus(ConformanceResourceStatus.ACTIVE); op.setKind(OperationKind.OPERATION); op.setIdempotent(true); op.setInstance(false); op.setSystem(false); Set<String> inParams = new HashSet<String>(); Set<String> outParams = new HashSet<String>(); for (OperationMethodBinding sharedDescription : sharedDescriptions) { if (isNotBlank(sharedDescription.getDescription())) { op.setDescription(sharedDescription.getDescription()); } if (sharedDescription.isCanOperateAtInstanceLevel()) { op.setInstance(true); } if (sharedDescription.isCanOperateAtServerLevel()) { op.setSystem(true); } if (!sharedDescription.isIdempotent()) { op.setIdempotent(sharedDescription.isIdempotent()); } op.setCode(sharedDescription.getName().substring(1)); if (sharedDescription.isCanOperateAtInstanceLevel()) { op.setInstance(sharedDescription.isCanOperateAtInstanceLevel()); } if (sharedDescription.isCanOperateAtServerLevel()) { op.setSystem(sharedDescription.isCanOperateAtServerLevel()); } if (isNotBlank(sharedDescription.getResourceName())) { op.addType(sharedDescription.getResourceName()); } for (IParameter nextParamUntyped : sharedDescription.getParameters()) { if (nextParamUntyped instanceof OperationParameter) { OperationParameter nextParam = (OperationParameter) nextParamUntyped; OperationDefinitionParameterComponent param = op.addParameter(); if (!inParams.add(nextParam.getName())) { continue; } param.setUse(OperationParameterUse.IN); if (nextParam.getParamType() != null) { param.setType(nextParam.getParamType()); } if (nextParam.getSearchParamType() != null) { param.getSearchTypeElement().setValueAsString(nextParam.getSearchParamType()); } param.setMin(nextParam.getMin()); param.setMax(nextParam.getMax() == -1 ? "*" : Integer.toString(nextParam.getMax())); param.setName(nextParam.getName()); } } for (ReturnType nextParam : sharedDescription.getReturnParams()) { if (!outParams.add(nextParam.getName())) { continue; } OperationDefinitionParameterComponent param = op.addParameter(); param.setUse(OperationParameterUse.OUT); if (nextParam.getType() != null) { param.setType(nextParam.getType()); } param.setMin(nextParam.getMin()); param.setMax(nextParam.getMax() == -1 ? "*" : Integer.toString(nextParam.getMax())); param.setName(nextParam.getName()); } } if (isBlank(op.getName())) { if (isNotBlank(op.getDescription())) { op.setName(op.getDescription()); } else { op.setName(op.getCode()); } } if (op.hasSystem() == false) { op.setSystem(false); } if (op.hasInstance() == false) { op.setInstance(false); } return op; } /** * Sets the cache property (default is true). If set to true, the same response will be returned for each invocation. * <p> * See the class documentation for an important note if you are extending this class * </p> */ public void setCache(boolean theCache) { myCache = theCache; } /** * Sets the value of the "publisher" that will be placed in the generated conformance statement. As this is a mandatory element, the value should not be null (although this is not enforced). The * value defaults to "Not provided" but may be set to null, which will cause this element to be omitted. */ public void setPublisher(String thePublisher) { myPublisher = thePublisher; } @Override public void setRestfulServer(RestfulServer theRestfulServer) { myServerConfiguration = theRestfulServer.createConfiguration(); } RestulfulServerConfiguration getServerConfiguration() { return myServerConfiguration; } private void sortRuntimeSearchParameters(List<RuntimeSearchParam> searchParameters) { Collections.sort(searchParameters, new Comparator<RuntimeSearchParam>() { @Override public int compare(RuntimeSearchParam theO1, RuntimeSearchParam theO2) { return theO1.getName().compareTo(theO2.getName()); } }); } private void sortSearchParameters(List<SearchParameter> searchParameters) { Collections.sort(searchParameters, new Comparator<SearchParameter>() { @Override public int compare(SearchParameter theO1, SearchParameter theO2) { if (theO1.isRequired() == theO2.isRequired()) { return theO1.getName().compareTo(theO2.getName()); } if (theO1.isRequired()) { return -1; } return 1; } }); } }