org.eurocarbdb.action.hplc.UploadAction.java Source code

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Here is the source code for org.eurocarbdb.action.hplc.UploadAction.java

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/*
*   EuroCarbDB, a framework for carbohydrate bioinformatics
*
*   Copyright (c) 2006-2009, Eurocarb project, or third-party contributors as
*   indicated by the @author tags or express copyright attribution
*   statements applied by the authors.  
*
*   This copyrighted material is made available to anyone wishing to use, modify,
*   copy, or redistribute it subject to the terms and conditions of the GNU
*   Lesser General Public License, as published by the Free Software Foundation.
*   A copy of this license accompanies this distribution in the file LICENSE.txt.
*
*   This program is distributed in the hope that it will be useful,
*   but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
*   or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
*   for more details.
*
*   Last commit: $Rev: 1549 $ by $Author: glycoslave $ on $Date:: 2009-07-19 #$  
*/

package org.eurocarbdb.action.hplc;

import java.io.*;
import java.util.*;
import org.apache.commons.io.*;
import org.apache.log4j.Logger;
import org.apache.commons.io.FileUtils;
import org.eurocarbdb.action.*;
import org.eurocarbdb.dataaccess.hplc.*;

import com.opensymphony.xwork.Action;
import com.opensymphony.xwork.Preparable;

import static org.eurocarbdb.dataaccess.Eurocarb.getEntityManager;
import org.eurocarbdb.dataaccess.EntityManager;
import org.hibernate.*;
import org.hibernate.cfg.*;

import javax.servlet.http.*;
import javax.servlet.http.*;

import org.apache.log4j.Logger;

public class UploadAction extends EurocarbAction implements RequiresLogin {

    SessionFactory sessionFactory = new Configuration().configure().buildSessionFactory();
    Session session = sessionFactory.openSession();

    //Session session =sessionFactory.getCurrentSession();
    //String seid = session.getId();
    //Session s = HibernateUtil.currentSession();
    //factory.getCurrentSession()

    //   Session s = (Session) session.get();

    //InetAddress inetAddress = InetAddress.getByName("www.interviewjava.blogspot.com");
    //System.out.println ("IP  Address: " + inetAddress.getHostAddress());

    private Profile parent = null;
    private Detector detector = null;
    private Column column = null;
    private Instrument instrument = null;
    private int detector_id;
    private int instrument_id;
    private int column_id;
    private int parent_id;
    private int profile_id;

    private File file;
    private String contentType;
    private String filename;
    private int digest_id;

    protected static final Logger logger = Logger.getLogger(refine.class.getName());

    // File targetDir = new File(System.getProperty("java.io.tmpdir"));
    // File tar = new File ("/tmp/undigested" + profile_id + ".txt");

    //lets get the seesion id
    /*protected void doGet(HttpServletRequest request, HttpServletResponse response){
    HttpSession session = request.getSession(true);
        
        
    String id = session.getId();
        
        
        
    logger.info("which session id:" + id);
    }
        Session sesssss = HibernateUtil.getSessionFactory().getCurrentSession().getId();
    */

    /* test copy section
           File source = new File("/tmp/january.doc");
           File target = new File("/tmp/january-backup.doc");
         //  String location = file.getAbsolutePath();
    */

    public String execute() throws Exception {

        if (submitAction.equals("Upload")) {
            //     String location = file.getAbsolutePath();

            //going to move the file uploaded to /tmp an label with profile id
            File targetDir = new File(System.getProperty("java.io.tmpdir"));
            File tar = new File("/tmp/undigested" + profile_id + ".txt");

            FileUtils.copyFileToDirectory(file, targetDir);
            FileUtils.copyFile(file, tar);

            logger.info("check the profile id:" + profile_id);

            //HttpServletRequest request;
            //HttpServletResponse response;
            //HttpSession session = request.getSession(true);
            //String id = session.getId();
            //logger.info("my session" + session);
            //logger.info("my id" + id);
            return SUCCESS;
        }

        else {
            return INPUT;
        }
    }

    public void setUpload(File file) {
        this.file = file;
    }

    public void setUploadContentType(String contentType) {
        this.contentType = contentType;
    }

    public void setUploadFileName(String filename) {
        this.filename = filename;
    }

    public Profile getProfile() {
        return parent;
    }

    public void setProfile(Profile parent) {
        this.parent = parent;
    }

    public void setProfileId(int id) {
        this.profile_id = id;
    }

    public int getProfileId() {
        return this.profile_id;
    }

    // getter and setter for evaluting parent ids

    public Detector getDetector() {
        return detector;
    }

    public void setDetector(Detector detector) {
        this.detector = detector;
    }

    public void setDetectorId(int id) {
        this.detector_id = id;
    }

    public int getDetectorId() {
        return this.detector_id;
    }

    public Instrument getInstrument() {
        return instrument;
    }

    public void setInstrument(Instrument instrument) {
        this.instrument = instrument;
    }

    public void setInstrumentId(int id) {
        this.instrument_id = id;
    }

    public int getInstrumentId() {
        return this.instrument_id;
    }

    public Column getColumn() {
        return column;
    }

    public void setColumn(Column column) {
        this.column = column;
    }

    public void setColumnId(int id) {
        this.column_id = id;
    }

    public int getColumnId() {
        return this.column_id;
    }

}