org.eurocarbdb.action.hplc.digestUpload.java Source code

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Here is the source code for org.eurocarbdb.action.hplc.digestUpload.java

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/*
*   EuroCarbDB, a framework for carbohydrate bioinformatics
*
*   Copyright (c) 2006-2009, Eurocarb project, or third-party contributors as
*   indicated by the @author tags or express copyright attribution
*   statements applied by the authors.  
*
*   This copyrighted material is made available to anyone wishing to use, modify,
*   copy, or redistribute it subject to the terms and conditions of the GNU
*   Lesser General Public License, as published by the Free Software Foundation.
*   A copy of this license accompanies this distribution in the file LICENSE.txt.
*
*   This program is distributed in the hope that it will be useful,
*   but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
*   or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
*   for more details.
*
*   Last commit: $Rev: 1549 $ by $Author: glycoslave $ on $Date:: 2009-07-19 #$  
*/

package org.eurocarbdb.action.hplc;

import java.io.*;
import java.util.*;
import java.lang.*;
import org.apache.log4j.Logger;
import org.apache.commons.io.FileUtils;
import org.eurocarbdb.action.*;

import org.eurocarbdb.action.*;
import org.eurocarbdb.dataaccess.*;
import org.eurocarbdb.dataaccess.hplc.*;

import static org.eurocarbdb.dataaccess.Eurocarb.getEntityManager;
import org.eurocarbdb.dataaccess.EntityManager;
import org.hibernate.*;
import org.hibernate.cfg.*;

import com.opensymphony.xwork.Action;
import com.opensymphony.xwork.Preparable;

public class digestUpload extends EurocarbAction {

    private File file;
    private int digest_id;
    private int profile_id;
    private String enzymeName;

    File targetDir = new File(System.getProperty("java.io.tmpdir"));
    // File tar = new File ("/tmp/digest_file.txt");

    public String execute() throws Exception {

        if (submitAction.equals("Upload") && digest_id > 0) {

            File tar = new File("/tmp/digest" + profile_id + digest_id + ".txt");

            FileUtils.copyFileToDirectory(file, targetDir);
            FileUtils.copyFile(file, tar);

            //File tarx = new File ("/tmp/digested" + digest_id + ".txt");
            //File tarx = new File ("/tmp/digested" + profile_id + digest_id + ".txt");
            //FileUtils.copyFile(tar, tarx); 

            /*        boolean success = (new File("/tmp/digest_file.txt")).delete();
                    if (!success) {
                    // Deletion failed
                    }
            */

            return SUCCESS;
        }

        else {
            return INPUT;
        }

    } //end execute

    public void setUpload(File file) {
        this.file = file;
    }

    public void setEnzymeName(String enzyme) {
        this.enzymeName = enzyme;
    }

    public String getEnzymeName() {
        return this.enzymeName;
    }

    public void setDigestId(int id) {
        this.digest_id = id;
    }

    public int getDigestId() {
        return this.digest_id;
    }

    public void setProfileId(int id) {
        this.profile_id = id;
    }

    public int getProfileId() {
        return this.profile_id;
    }

}