org.eclipse.jgit.dircache.DirCacheEntry.java Source code

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/*
 * Copyright (C) 2008-2009, Google Inc.
 * Copyright (C) 2008, Shawn O. Pearce <spearce@spearce.org>
 * Copyright (C) 2010, Matthias Sohn <matthias.sohn@sap.com>
 * Copyright (C) 2010, Christian Halstrick <christian.halstrick@sap.com>
 * and other copyright owners as documented in the project's IP log.
 *
 * This program and the accompanying materials are made available
 * under the terms of the Eclipse Distribution License v1.0 which
 * accompanies this distribution, is reproduced below, and is
 * available at http://www.eclipse.org/org/documents/edl-v10.php
 *
 * All rights reserved.
 *
 * Redistribution and use in source and binary forms, with or
 * without modification, are permitted provided that the following
 * conditions are met:
 *
 * - Redistributions of source code must retain the above copyright
 *   notice, this list of conditions and the following disclaimer.
 *
 * - Redistributions in binary form must reproduce the above
 *   copyright notice, this list of conditions and the following
 *   disclaimer in the documentation and/or other materials provided
 *   with the distribution.
 *
 * - Neither the name of the Eclipse Foundation, Inc. nor the
 *   names of its contributors may be used to endorse or promote
 *   products derived from this software without specific prior
 *   written permission.
 *
 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND
 * CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES,
 * INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
 * OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
 * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
 * CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
 * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
 * NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
 * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
 * CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
 * STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
 * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
 * ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 */

package org.eclipse.jgit.dircache;

import static java.nio.charset.StandardCharsets.UTF_8;

import java.io.ByteArrayOutputStream;
import java.io.EOFException;
import java.io.IOException;
import java.io.InputStream;
import java.io.OutputStream;
import java.nio.ByteBuffer;
import java.security.MessageDigest;
import java.text.MessageFormat;
import java.time.Instant;
import java.util.Arrays;

import org.eclipse.jgit.errors.CorruptObjectException;
import org.eclipse.jgit.internal.JGitText;
import org.eclipse.jgit.lib.AnyObjectId;
import org.eclipse.jgit.lib.Constants;
import org.eclipse.jgit.lib.FileMode;
import org.eclipse.jgit.lib.ObjectId;
import org.eclipse.jgit.util.IO;
import org.eclipse.jgit.util.MutableInteger;
import org.eclipse.jgit.util.NB;
import org.eclipse.jgit.util.SystemReader;

/**
 * A single file (or stage of a file) in a
 * {@link org.eclipse.jgit.dircache.DirCache}.
 * <p>
 * An entry represents exactly one stage of a file. If a file path is unmerged
 * then multiple DirCacheEntry instances may appear for the same path name.
 */
public class DirCacheEntry {
    private static final byte[] nullpad = new byte[8];

    /** The standard (fully merged) stage for an entry. */
    public static final int STAGE_0 = 0;

    /** The base tree revision for an entry. */
    public static final int STAGE_1 = 1;

    /** The first tree revision (usually called "ours"). */
    public static final int STAGE_2 = 2;

    /** The second tree revision (usually called "theirs"). */
    public static final int STAGE_3 = 3;

    private static final int P_CTIME = 0;

    // private static final int P_CTIME_NSEC = 4;

    private static final int P_MTIME = 8;

    // private static final int P_MTIME_NSEC = 12;

    // private static final int P_DEV = 16;

    // private static final int P_INO = 20;

    private static final int P_MODE = 24;

    // private static final int P_UID = 28;

    // private static final int P_GID = 32;

    private static final int P_SIZE = 36;

    private static final int P_OBJECTID = 40;

    private static final int P_FLAGS = 60;
    private static final int P_FLAGS2 = 62;

    /** Mask applied to data in {@link #P_FLAGS} to get the name length. */
    private static final int NAME_MASK = 0xfff;

    private static final int INTENT_TO_ADD = 0x20000000;
    private static final int SKIP_WORKTREE = 0x40000000;
    private static final int EXTENDED_FLAGS = (INTENT_TO_ADD | SKIP_WORKTREE);

    private static final int INFO_LEN = 62;
    private static final int INFO_LEN_EXTENDED = 64;

    private static final int EXTENDED = 0x40;
    private static final int ASSUME_VALID = 0x80;

    /** In-core flag signaling that the entry should be considered as modified. */
    private static final int UPDATE_NEEDED = 0x1;

    /** (Possibly shared) header information storage. */
    private final byte[] info;

    /** First location within {@link #info} where our header starts. */
    private final int infoOffset;

    /** Our encoded path name, from the root of the repository. */
    final byte[] path;

    /** Flags which are never stored to disk. */
    private byte inCoreFlags;

    DirCacheEntry(final byte[] sharedInfo, final MutableInteger infoAt, final InputStream in,
            final MessageDigest md, final Instant smudge) throws IOException {
        info = sharedInfo;
        infoOffset = infoAt.value;

        IO.readFully(in, info, infoOffset, INFO_LEN);

        final int len;
        if (isExtended()) {
            len = INFO_LEN_EXTENDED;
            IO.readFully(in, info, infoOffset + INFO_LEN, INFO_LEN_EXTENDED - INFO_LEN);

            if ((getExtendedFlags() & ~EXTENDED_FLAGS) != 0)
                throw new IOException(MessageFormat.format(JGitText.get().DIRCUnrecognizedExtendedFlags,
                        String.valueOf(getExtendedFlags())));
        } else
            len = INFO_LEN;

        infoAt.value += len;
        md.update(info, infoOffset, len);

        int pathLen = NB.decodeUInt16(info, infoOffset + P_FLAGS) & NAME_MASK;
        int skipped = 0;
        if (pathLen < NAME_MASK) {
            path = new byte[pathLen];
            IO.readFully(in, path, 0, pathLen);
            md.update(path, 0, pathLen);
        } else {
            final ByteArrayOutputStream tmp = new ByteArrayOutputStream();
            {
                final byte[] buf = new byte[NAME_MASK];
                IO.readFully(in, buf, 0, NAME_MASK);
                tmp.write(buf);
            }
            for (;;) {
                final int c = in.read();
                if (c < 0)
                    throw new EOFException(JGitText.get().shortReadOfBlock);
                if (c == 0)
                    break;
                tmp.write(c);
            }
            path = tmp.toByteArray();
            pathLen = path.length;
            skipped = 1; // we already skipped 1 '\0' above to break the loop.
            md.update(path, 0, pathLen);
            md.update((byte) 0);
        }

        try {
            checkPath(path);
        } catch (InvalidPathException e) {
            CorruptObjectException p = new CorruptObjectException(e.getMessage());
            if (e.getCause() != null)
                p.initCause(e.getCause());
            throw p;
        }

        // Index records are padded out to the next 8 byte alignment
        // for historical reasons related to how C Git read the files.
        //
        final int actLen = len + pathLen;
        final int expLen = (actLen + 8) & ~7;
        final int padLen = expLen - actLen - skipped;
        if (padLen > 0) {
            IO.skipFully(in, padLen);
            md.update(nullpad, 0, padLen);
        }

        if (mightBeRacilyClean(smudge)) {
            smudgeRacilyClean();
        }
    }

    /**
     * Create an empty entry at stage 0.
     *
     * @param newPath
     *            name of the cache entry.
     * @throws java.lang.IllegalArgumentException
     *             If the path starts or ends with "/", or contains "//" either
     *             "\0". These sequences are not permitted in a git tree object
     *             or DirCache file.
     */
    public DirCacheEntry(String newPath) {
        this(Constants.encode(newPath), STAGE_0);
    }

    /**
     * Create an empty entry at the specified stage.
     *
     * @param newPath
     *            name of the cache entry.
     * @param stage
     *            the stage index of the new entry.
     * @throws java.lang.IllegalArgumentException
     *             If the path starts or ends with "/", or contains "//" either
     *             "\0". These sequences are not permitted in a git tree object
     *             or DirCache file.  Or if {@code stage} is outside of the
     *             range 0..3, inclusive.
     */
    public DirCacheEntry(String newPath, int stage) {
        this(Constants.encode(newPath), stage);
    }

    /**
     * Create an empty entry at stage 0.
     *
     * @param newPath
     *            name of the cache entry, in the standard encoding.
     * @throws java.lang.IllegalArgumentException
     *             If the path starts or ends with "/", or contains "//" either
     *             "\0". These sequences are not permitted in a git tree object
     *             or DirCache file.
     */
    public DirCacheEntry(byte[] newPath) {
        this(newPath, STAGE_0);
    }

    /**
     * Create an empty entry at the specified stage.
     *
     * @param path
     *            name of the cache entry, in the standard encoding.
     * @param stage
     *            the stage index of the new entry.
     * @throws java.lang.IllegalArgumentException
     *             If the path starts or ends with "/", or contains "//" either
     *             "\0". These sequences are not permitted in a git tree object
     *             or DirCache file.  Or if {@code stage} is outside of the
     *             range 0..3, inclusive.
     */
    @SuppressWarnings("boxing")
    public DirCacheEntry(byte[] path, int stage) {
        checkPath(path);
        if (stage < 0 || 3 < stage)
            throw new IllegalArgumentException(
                    MessageFormat.format(JGitText.get().invalidStageForPath, stage, toString(path)));

        info = new byte[INFO_LEN];
        infoOffset = 0;
        this.path = path;

        int flags = ((stage & 0x3) << 12);
        if (path.length < NAME_MASK)
            flags |= path.length;
        else
            flags |= NAME_MASK;
        NB.encodeInt16(info, infoOffset + P_FLAGS, flags);
    }

    /**
     * Duplicate DirCacheEntry with same path and copied info.
     * <p>
     * The same path buffer is reused (avoiding copying), however a new info
     * buffer is created and its contents are copied.
     *
     * @param src
     *            entry to clone.
     * @since 4.2
     */
    public DirCacheEntry(DirCacheEntry src) {
        path = src.path;
        info = new byte[INFO_LEN];
        infoOffset = 0;
        System.arraycopy(src.info, src.infoOffset, info, 0, INFO_LEN);
    }

    void write(OutputStream os) throws IOException {
        final int len = isExtended() ? INFO_LEN_EXTENDED : INFO_LEN;
        final int pathLen = path.length;
        os.write(info, infoOffset, len);
        os.write(path, 0, pathLen);

        // Index records are padded out to the next 8 byte alignment
        // for historical reasons related to how C Git read the files.
        //
        final int actLen = len + pathLen;
        final int expLen = (actLen + 8) & ~7;
        if (actLen != expLen)
            os.write(nullpad, 0, expLen - actLen);
    }

    /**
     * Is it possible for this entry to be accidentally assumed clean?
     * <p>
     * The "racy git" problem happens when a work file can be updated faster
     * than the filesystem records file modification timestamps. It is possible
     * for an application to edit a work file, update the index, then edit it
     * again before the filesystem will give the work file a new modification
     * timestamp. This method tests to see if file was written out at the same
     * time as the index.
     *
     * @param smudge_s
     *            seconds component of the index's last modified time.
     * @param smudge_ns
     *            nanoseconds component of the index's last modified time.
     * @return true if extra careful checks should be used.
     * @deprecated use {@link #mightBeRacilyClean(Instant)} instead
     */
    @Deprecated
    public final boolean mightBeRacilyClean(int smudge_s, int smudge_ns) {
        return mightBeRacilyClean(Instant.ofEpochSecond(smudge_s, smudge_ns));
    }

    /**
     * Is it possible for this entry to be accidentally assumed clean?
     * <p>
     * The "racy git" problem happens when a work file can be updated faster
     * than the filesystem records file modification timestamps. It is possible
     * for an application to edit a work file, update the index, then edit it
     * again before the filesystem will give the work file a new modification
     * timestamp. This method tests to see if file was written out at the same
     * time as the index.
     *
     * @param smudge
     *            index's last modified time.
     * @return true if extra careful checks should be used.
     * @since 5.1.9
     */
    public final boolean mightBeRacilyClean(Instant smudge) {
        // If the index has a modification time then it came from disk
        // and was not generated from scratch in memory. In such cases
        // the entry is 'racily clean' if the entry's cached modification
        // time is equal to or later than the index modification time. In
        // such cases the work file is too close to the index to tell if
        // it is clean or not based on the modification time alone.
        //
        final int base = infoOffset + P_MTIME;
        final int mtime = NB.decodeInt32(info, base);
        if ((int) smudge.getEpochSecond() == mtime) {
            return smudge.getNano() <= NB.decodeInt32(info, base + 4);
        }
        return false;
    }

    /**
     * Force this entry to no longer match its working tree file.
     * <p>
     * This avoids the "racy git" problem by making this index entry no longer
     * match the file in the working directory. Later git will be forced to
     * compare the file content to ensure the file matches the working tree.
     */
    public final void smudgeRacilyClean() {
        // To mark an entry racily clean we set its length to 0 (like native git
        // does). Entries which are not racily clean and have zero length can be
        // distinguished from racily clean entries by checking P_OBJECTID
        // against the SHA1 of empty content. When length is 0 and P_OBJECTID is
        // different from SHA1 of empty content we know the entry is marked
        // racily clean
        final int base = infoOffset + P_SIZE;
        Arrays.fill(info, base, base + 4, (byte) 0);
    }

    /**
     * Check whether this entry has been smudged or not
     * <p>
     * If a blob has length 0 we know its id, see
     * {@link org.eclipse.jgit.lib.Constants#EMPTY_BLOB_ID}. If an entry has
     * length 0 and an ID different from the one for empty blob we know this
     * entry was smudged.
     *
     * @return <code>true</code> if the entry is smudged, <code>false</code>
     *         otherwise
     */
    public final boolean isSmudged() {
        final int base = infoOffset + P_OBJECTID;
        return (getLength() == 0) && (Constants.EMPTY_BLOB_ID.compareTo(info, base) != 0);
    }

    final byte[] idBuffer() {
        return info;
    }

    final int idOffset() {
        return infoOffset + P_OBJECTID;
    }

    /**
     * Is this entry always thought to be unmodified?
     * <p>
     * Most entries in the index do not have this flag set. Users may however
     * set them on if the file system stat() costs are too high on this working
     * directory, such as on NFS or SMB volumes.
     *
     * @return true if we must assume the entry is unmodified.
     */
    public boolean isAssumeValid() {
        return (info[infoOffset + P_FLAGS] & ASSUME_VALID) != 0;
    }

    /**
     * Set the assume valid flag for this entry,
     *
     * @param assume
     *            true to ignore apparent modifications; false to look at last
     *            modified to detect file modifications.
     */
    public void setAssumeValid(boolean assume) {
        if (assume)
            info[infoOffset + P_FLAGS] |= (byte) ASSUME_VALID;
        else
            info[infoOffset + P_FLAGS] &= (byte) ~ASSUME_VALID;
    }

    /**
     * Whether this entry should be checked for changes
     *
     * @return {@code true} if this entry should be checked for changes
     */
    public boolean isUpdateNeeded() {
        return (inCoreFlags & UPDATE_NEEDED) != 0;
    }

    /**
     * Set whether this entry must be checked for changes
     *
     * @param updateNeeded
     *            whether this entry must be checked for changes
     */
    public void setUpdateNeeded(boolean updateNeeded) {
        if (updateNeeded)
            inCoreFlags |= (byte) UPDATE_NEEDED;
        else
            inCoreFlags &= (byte) ~UPDATE_NEEDED;
    }

    /**
     * Get the stage of this entry.
     * <p>
     * Entries have one of 4 possible stages: 0-3.
     *
     * @return the stage of this entry.
     */
    public int getStage() {
        return (info[infoOffset + P_FLAGS] >>> 4) & 0x3;
    }

    /**
     * Returns whether this entry should be skipped from the working tree.
     *
     * @return true if this entry should be skipepd.
     */
    public boolean isSkipWorkTree() {
        return (getExtendedFlags() & SKIP_WORKTREE) != 0;
    }

    /**
     * Returns whether this entry is intent to be added to the Index.
     *
     * @return true if this entry is intent to add.
     */
    public boolean isIntentToAdd() {
        return (getExtendedFlags() & INTENT_TO_ADD) != 0;
    }

    /**
     * Returns whether this entry is in the fully-merged stage (0).
     *
     * @return true if this entry is merged
     * @since 2.2
     */
    public boolean isMerged() {
        return getStage() == STAGE_0;
    }

    /**
     * Obtain the raw {@link org.eclipse.jgit.lib.FileMode} bits for this entry.
     *
     * @return mode bits for the entry.
     * @see FileMode#fromBits(int)
     */
    public int getRawMode() {
        return NB.decodeInt32(info, infoOffset + P_MODE);
    }

    /**
     * Obtain the {@link org.eclipse.jgit.lib.FileMode} for this entry.
     *
     * @return the file mode singleton for this entry.
     */
    public FileMode getFileMode() {
        return FileMode.fromBits(getRawMode());
    }

    /**
     * Set the file mode for this entry.
     *
     * @param mode
     *            the new mode constant.
     * @throws java.lang.IllegalArgumentException
     *             If {@code mode} is
     *             {@link org.eclipse.jgit.lib.FileMode#MISSING},
     *             {@link org.eclipse.jgit.lib.FileMode#TREE}, or any other type
     *             code not permitted in a tree object.
     */
    public void setFileMode(FileMode mode) {
        switch (mode.getBits() & FileMode.TYPE_MASK) {
        case FileMode.TYPE_MISSING:
        case FileMode.TYPE_TREE:
            throw new IllegalArgumentException(
                    MessageFormat.format(JGitText.get().invalidModeForPath, mode, getPathString()));
        }
        NB.encodeInt32(info, infoOffset + P_MODE, mode.getBits());
    }

    void setFileMode(int mode) {
        NB.encodeInt32(info, infoOffset + P_MODE, mode);
    }

    /**
     * Get the cached creation time of this file, in milliseconds.
     *
     * @return cached creation time of this file, in milliseconds since the
     *         Java epoch (midnight Jan 1, 1970 UTC).
     */
    public long getCreationTime() {
        return decodeTS(P_CTIME);
    }

    /**
     * Set the cached creation time of this file, using milliseconds.
     *
     * @param when
     *            new cached creation time of the file, in milliseconds.
     */
    public void setCreationTime(long when) {
        encodeTS(P_CTIME, when);
    }

    /**
     * Get the cached last modification date of this file, in milliseconds.
     * <p>
     * One of the indicators that the file has been modified by an application
     * changing the working tree is if the last modification time for the file
     * differs from the time stored in this entry.
     *
     * @return last modification time of this file, in milliseconds since the
     *         Java epoch (midnight Jan 1, 1970 UTC).
     * @deprecated use {@link #getLastModifiedInstant()} instead
     */
    @Deprecated
    public long getLastModified() {
        return decodeTS(P_MTIME);
    }

    /**
     * Get the cached last modification date of this file.
     * <p>
     * One of the indicators that the file has been modified by an application
     * changing the working tree is if the last modification time for the file
     * differs from the time stored in this entry.
     *
     * @return last modification time of this file.
     * @since 5.1.9
     */
    public Instant getLastModifiedInstant() {
        return decodeTSInstant(P_MTIME);
    }

    /**
     * Set the cached last modification date of this file, using milliseconds.
     *
     * @param when
     *            new cached modification date of the file, in milliseconds.
     * @deprecated use {@link #setLastModified(Instant)} instead
     */
    @Deprecated
    public void setLastModified(long when) {
        encodeTS(P_MTIME, when);
    }

    /**
     * Set the cached last modification date of this file.
     *
     * @param when
     *            new cached modification date of the file.
     * @since 5.1.9
     */
    public void setLastModified(Instant when) {
        encodeTS(P_MTIME, when);
    }

    /**
     * Get the cached size (mod 4 GB) (in bytes) of this file.
     * <p>
     * One of the indicators that the file has been modified by an application
     * changing the working tree is if the size of the file (in bytes) differs
     * from the size stored in this entry.
     * <p>
     * Note that this is the length of the file in the working directory, which
     * may differ from the size of the decompressed blob if work tree filters
     * are being used, such as LF&lt;-&gt;CRLF conversion.
     * <p>
     * Note also that for very large files, this is the size of the on-disk file
     * truncated to 32 bits, i.e. modulo 4294967296. If that value is larger
     * than 2GB, it will appear negative.
     *
     * @return cached size of the working directory file, in bytes.
     */
    public int getLength() {
        return NB.decodeInt32(info, infoOffset + P_SIZE);
    }

    /**
     * Set the cached size (in bytes) of this file.
     *
     * @param sz
     *            new cached size of the file, as bytes. If the file is larger
     *            than 2G, cast it to (int) before calling this method.
     */
    public void setLength(int sz) {
        NB.encodeInt32(info, infoOffset + P_SIZE, sz);
    }

    /**
     * Set the cached size (in bytes) of this file.
     *
     * @param sz
     *            new cached size of the file, as bytes.
     */
    public void setLength(long sz) {
        setLength((int) sz);
    }

    /**
     * Obtain the ObjectId for the entry.
     * <p>
     * Using this method to compare ObjectId values between entries is
     * inefficient as it causes memory allocation.
     *
     * @return object identifier for the entry.
     */
    public ObjectId getObjectId() {
        return ObjectId.fromRaw(idBuffer(), idOffset());
    }

    /**
     * Set the ObjectId for the entry.
     *
     * @param id
     *            new object identifier for the entry. May be
     *            {@link org.eclipse.jgit.lib.ObjectId#zeroId()} to remove the
     *            current identifier.
     */
    public void setObjectId(AnyObjectId id) {
        id.copyRawTo(idBuffer(), idOffset());
    }

    /**
     * Set the ObjectId for the entry from the raw binary representation.
     *
     * @param bs
     *            the raw byte buffer to read from. At least 20 bytes after p
     *            must be available within this byte array.
     * @param p
     *            position to read the first byte of data from.
     */
    public void setObjectIdFromRaw(byte[] bs, int p) {
        final int n = Constants.OBJECT_ID_LENGTH;
        System.arraycopy(bs, p, idBuffer(), idOffset(), n);
    }

    /**
     * Get the entry's complete path.
     * <p>
     * This method is not very efficient and is primarily meant for debugging
     * and final output generation. Applications should try to avoid calling it,
     * and if invoked do so only once per interesting entry, where the name is
     * absolutely required for correct function.
     *
     * @return complete path of the entry, from the root of the repository. If
     *         the entry is in a subtree there will be at least one '/' in the
     *         returned string.
     */
    public String getPathString() {
        return toString(path);
    }

    /**
     * Get a copy of the entry's raw path bytes.
     *
     * @return raw path bytes.
     * @since 3.4
     */
    public byte[] getRawPath() {
        return path.clone();
    }

    /**
     * {@inheritDoc}
     * <p>
     * Use for debugging only !
     */
    @SuppressWarnings("nls")
    @Override
    public String toString() {
        return getFileMode() + " " + getLength() + " " + getLastModifiedInstant() + " " + getObjectId() + " "
                + getStage() + " " + getPathString() + "\n";
    }

    /**
     * Copy the ObjectId and other meta fields from an existing entry.
     * <p>
     * This method copies everything except the path from one entry to another,
     * supporting renaming.
     *
     * @param src
     *            the entry to copy ObjectId and meta fields from.
     */
    public void copyMetaData(DirCacheEntry src) {
        copyMetaData(src, false);
    }

    /**
     * Copy the ObjectId and other meta fields from an existing entry.
     * <p>
     * This method copies everything except the path and possibly stage from one
     * entry to another, supporting renaming.
     *
     * @param src
     *            the entry to copy ObjectId and meta fields from.
     * @param keepStage
     *            if true, the stage attribute will not be copied
     */
    void copyMetaData(DirCacheEntry src, boolean keepStage) {
        int origflags = NB.decodeUInt16(info, infoOffset + P_FLAGS);
        int newflags = NB.decodeUInt16(src.info, src.infoOffset + P_FLAGS);
        System.arraycopy(src.info, src.infoOffset, info, infoOffset, INFO_LEN);
        final int pLen = origflags & NAME_MASK;
        final int SHIFTED_STAGE_MASK = 0x3 << 12;
        final int pStageShifted;
        if (keepStage)
            pStageShifted = origflags & SHIFTED_STAGE_MASK;
        else
            pStageShifted = newflags & SHIFTED_STAGE_MASK;
        NB.encodeInt16(info, infoOffset + P_FLAGS,
                pStageShifted | pLen | (newflags & ~NAME_MASK & ~SHIFTED_STAGE_MASK));
    }

    /**
     * @return true if the entry contains extended flags.
     */
    boolean isExtended() {
        return (info[infoOffset + P_FLAGS] & EXTENDED) != 0;
    }

    private long decodeTS(int pIdx) {
        final int base = infoOffset + pIdx;
        final int sec = NB.decodeInt32(info, base);
        final int ms = NB.decodeInt32(info, base + 4) / 1000000;
        return 1000L * sec + ms;
    }

    private Instant decodeTSInstant(int pIdx) {
        final int base = infoOffset + pIdx;
        final int sec = NB.decodeInt32(info, base);
        final int nano = NB.decodeInt32(info, base + 4);
        return Instant.ofEpochSecond(sec, nano);
    }

    private void encodeTS(int pIdx, long when) {
        final int base = infoOffset + pIdx;
        NB.encodeInt32(info, base, (int) (when / 1000));
        NB.encodeInt32(info, base + 4, ((int) (when % 1000)) * 1000000);
    }

    private void encodeTS(int pIdx, Instant when) {
        final int base = infoOffset + pIdx;
        NB.encodeInt32(info, base, (int) when.getEpochSecond());
        NB.encodeInt32(info, base + 4, when.getNano());
    }

    private int getExtendedFlags() {
        if (isExtended()) {
            return NB.decodeUInt16(info, infoOffset + P_FLAGS2) << 16;
        }
        return 0;
    }

    private static void checkPath(byte[] path) {
        try {
            SystemReader.getInstance().checkPath(path);
        } catch (CorruptObjectException e) {
            InvalidPathException p = new InvalidPathException(toString(path));
            p.initCause(e);
            throw p;
        }
    }

    static String toString(byte[] path) {
        return UTF_8.decode(ByteBuffer.wrap(path)).toString();
    }

    static int getMaximumInfoLength(boolean extended) {
        return extended ? INFO_LEN_EXTENDED : INFO_LEN;
    }
}