Java tutorial
/* * This file is part of ADDIS (Aggregate Data Drug Information System). * ADDIS is distributed from http://drugis.org/. * Copyright 2009 Gert van Valkenhoef, Tommi Tervonen. * Copyright 2010 Gert van Valkenhoef, Tommi Tervonen, Tijs Zwinkels, * Maarten Jacobs, Hanno Koeslag, Florin Schimbinschi, Ahmad Kamal, Daniel * Reid. * Copyright 2011 Gert van Valkenhoef, Ahmad Kamal, Daniel Reid, Florin * Schimbinschi. * Copyright 2012 Gert van Valkenhoef, Daniel Reid, Jol Kuiper, Wouter * Reckman. * Copyright 2013 Gert van Valkenhoef, Jol Kuiper. * * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. */ package org.drugis.addis.presentation; import static org.junit.Assert.assertEquals; import static org.junit.Assert.assertNull; import static org.junit.Assert.assertTrue; import org.drugis.addis.ExampleData; import org.drugis.addis.entities.Arm; import org.drugis.addis.entities.Domain; import org.drugis.addis.entities.DomainImpl; import org.drugis.addis.entities.Endpoint; import org.drugis.addis.entities.Measurement; import org.drugis.addis.entities.Study; import org.drugis.addis.entities.relativeeffect.BasicRelativeEffect; import org.drugis.addis.entities.relativeeffect.RelativeEffect; import org.junit.Test; import com.jgoodies.binding.PresentationModel; public abstract class RelativeEffectTableModelBaseTest { protected Study d_standardStudy; protected Study d_threeArmStudy; protected AbstractRelativeEffectTableModel d_stdModel; protected RelativeEffectTableModel d_threeArmModel; protected Endpoint d_endpoint; protected PresentationModelFactory d_pmf; protected Class<? extends RelativeEffect<?>> d_relativeEffectClass; @Test public void testGetColumnCount() { assertEquals(d_standardStudy.getArms().size(), d_stdModel.getColumnCount()); assertEquals(d_threeArmStudy.getArms().size(), d_threeArmModel.getColumnCount()); } @Test public void testGetRowCount() { assertEquals(d_standardStudy.getArms().size(), d_stdModel.getRowCount()); assertEquals(d_threeArmStudy.getArms().size(), d_threeArmModel.getRowCount()); } @SuppressWarnings("unchecked") @Test public void testGetValueAtUpperRightPart() { assertEquals(3, d_threeArmStudy.getArms().size()); Arm pg0 = d_threeArmStudy.getArms().get(0); Arm pg1 = d_threeArmStudy.getArms().get(1); Arm pg2 = d_threeArmStudy.getArms().get(2); PresentationModel<BasicRelativeEffect<?>> val01 = (PresentationModel<BasicRelativeEffect<?>>) d_threeArmModel .getValueAt(0, 1); assertTrue(d_relativeEffectClass.isInstance(val01.getBean())); assertEquals(d_threeArmStudy.getMeasurement(d_endpoint, pg0), val01.getBean().getBaseline()); assertEquals(d_threeArmStudy.getMeasurement(d_endpoint, pg1), val01.getBean().getSubject()); PresentationModel<BasicRelativeEffect<?>> val12 = (PresentationModel<BasicRelativeEffect<?>>) d_threeArmModel .getValueAt(1, 2); assertTrue(d_relativeEffectClass.isInstance(val12.getBean())); assertEquals(d_threeArmStudy.getMeasurement(d_endpoint, pg1), val12.getBean().getBaseline()); assertEquals(d_threeArmStudy.getMeasurement(d_endpoint, pg2), val12.getBean().getSubject()); } @SuppressWarnings("unchecked") @Test public void testGetValueAtLowerLeftPart() { assertEquals(3, d_threeArmStudy.getArms().size()); Arm pg0 = d_threeArmStudy.getArms().get(0); Arm pg1 = d_threeArmStudy.getArms().get(1); Arm pg2 = d_threeArmStudy.getArms().get(2); PresentationModel<BasicRelativeEffect<?>> val20 = (PresentationModel<BasicRelativeEffect<?>>) d_threeArmModel .getValueAt(2, 0); assertTrue(d_relativeEffectClass.isInstance(val20.getBean())); assertEquals(d_threeArmStudy.getMeasurement(d_endpoint, pg2), val20.getBean().getBaseline()); assertEquals(d_threeArmStudy.getMeasurement(d_endpoint, pg0), val20.getBean().getSubject()); PresentationModel<BasicRelativeEffect<?>> val21 = (PresentationModel<BasicRelativeEffect<?>>) d_threeArmModel .getValueAt(2, 1); assertTrue(d_relativeEffectClass.isInstance(val21.getBean())); assertEquals(d_threeArmStudy.getMeasurement(d_endpoint, pg2), val21.getBean().getBaseline()); assertEquals(d_threeArmStudy.getMeasurement(d_endpoint, pg1), val21.getBean().getSubject()); } @SuppressWarnings("rawtypes") @Test public void testGetValueAtDiagonal() { for (int i = 0; i < d_standardStudy.getArms().size(); ++i) { Object val = d_stdModel.getValueAt(i, i); assertTrue("Instance of PresentationModel", val instanceof PresentationModel); assertEquals(d_standardStudy.getArms().get(i), ((PresentationModel) val).getBean()); } for (int i = 0; i < d_threeArmStudy.getArms().size(); ++i) { Object val = d_threeArmModel.getValueAt(i, i); assertTrue("Instance of PresentationModel", val instanceof PresentationModel); assertEquals(d_threeArmStudy.getArms().get(i), ((PresentationModel) val).getBean()); } } @Test public void testGetDescriptionAtDiagonal() { assertNull(d_threeArmModel.getDescriptionAt(1, 1)); } @Test public void testGetDescriptionAt() { LabeledPresentation pg0 = d_pmf.getLabeledModel(d_threeArmStudy.getArms().get(0)); LabeledPresentation pg1 = d_pmf.getLabeledModel(d_threeArmStudy.getArms().get(1)); String expected = "\"" + pg1.getLabelModel().getValue() + "\" relative to \"" + pg0.getLabelModel().getValue() + "\""; assertEquals(expected, d_threeArmModel.getDescriptionAt(0, 1)); } @Test public void testGetDescription() { String description = d_threeArmModel.getTitle() + " for \"" + d_threeArmStudy.getName() + "\" on Endpoint \"" + d_endpoint.getName() + "\""; assertEquals(description, d_threeArmModel.getDescription()); } @Test public void testGetPlotPresentation() { ForestPlotPresentation pm = d_stdModel.getPlotPresentation(1, 0); assertEquals(d_relativeEffectClass, pm.getRelativeEffectAt(0).getClass()); assertEquals(d_standardStudy.toString(), pm.getStudyLabelAt(0)); assertEquals(1, pm.getNumRelativeEffects()); Measurement bl = (Measurement) ((BasicRelativeEffect<?>) pm.getRelativeEffectAt(0)).getBaseline(); assertEquals(d_standardStudy.getArms().get(1).getSize(), bl.getSampleSize()); Measurement subj = (Measurement) ((BasicRelativeEffect<?>) pm.getRelativeEffectAt(0)).getSubject(); assertEquals(d_standardStudy.getArms().get(0).getSize(), subj.getSampleSize()); assertEquals(d_endpoint, pm.getOutcomeMeasure()); } protected void baseSetUpRate() { d_standardStudy = ExampleData.realBuildStudyDeWilde(); d_threeArmStudy = ExampleData.buildStudyAdditionalThreeArm(); d_endpoint = ExampleData.buildEndpointHamd(); Domain domain = new DomainImpl(); d_pmf = new PresentationModelFactory(domain); } protected void baseSetUpContinuous() { d_standardStudy = ExampleData.buildStudyChouinard(); d_threeArmStudy = ExampleData.buildStudyAdditionalThreeArm(); d_endpoint = ExampleData.buildEndpointCgi(); Domain domain = new DomainImpl(); d_pmf = new PresentationModelFactory(domain); } }