Java tutorial
/***************************************************************** * This file is part of Managing Agricultural Research for Learning & * Outcomes Platform (MARLO). * MARLO is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation, either version 3 of the License, or * at your option) any later version. * MARLO is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * You should have received a copy of the GNU General Public License * along with MARLO. If not, see <http://www.gnu.org/licenses/>. *****************************************************************/ package org.cgiar.ccafs.marlo.action.annualReport; import org.cgiar.ccafs.marlo.action.BaseAction; import org.cgiar.ccafs.marlo.config.APConstants; import org.cgiar.ccafs.marlo.data.manager.AuditLogManager; import org.cgiar.ccafs.marlo.data.manager.CrpMilestoneManager; import org.cgiar.ccafs.marlo.data.manager.CrpProgramManager; import org.cgiar.ccafs.marlo.data.manager.GlobalUnitManager; import org.cgiar.ccafs.marlo.data.manager.LiaisonInstitutionManager; import org.cgiar.ccafs.marlo.data.manager.PhaseManager; import org.cgiar.ccafs.marlo.data.manager.ProjectFocusManager; import org.cgiar.ccafs.marlo.data.manager.ProjectManager; import org.cgiar.ccafs.marlo.data.manager.ReportSynthesisFlagshipProgressManager; import org.cgiar.ccafs.marlo.data.manager.ReportSynthesisFlagshipProgressMilestoneManager; import org.cgiar.ccafs.marlo.data.manager.ReportSynthesisManager; import org.cgiar.ccafs.marlo.data.manager.UserManager; import org.cgiar.ccafs.marlo.data.model.CrpMilestone; import org.cgiar.ccafs.marlo.data.model.CrpProgram; import org.cgiar.ccafs.marlo.data.model.CrpProgramOutcome; import org.cgiar.ccafs.marlo.data.model.GlobalUnit; import org.cgiar.ccafs.marlo.data.model.LiaisonInstitution; import org.cgiar.ccafs.marlo.data.model.LiaisonUser; import org.cgiar.ccafs.marlo.data.model.Phase; import org.cgiar.ccafs.marlo.data.model.ProgramType; import org.cgiar.ccafs.marlo.data.model.Project; import org.cgiar.ccafs.marlo.data.model.ProjectBudgetsFlagship; import org.cgiar.ccafs.marlo.data.model.ProjectFocus; import org.cgiar.ccafs.marlo.data.model.ProjectMilestone; import org.cgiar.ccafs.marlo.data.model.ProjectStatusEnum; import org.cgiar.ccafs.marlo.data.model.ReportSynthesis; import org.cgiar.ccafs.marlo.data.model.ReportSynthesisFlagshipProgress; import org.cgiar.ccafs.marlo.data.model.ReportSynthesisFlagshipProgressMilestone; import org.cgiar.ccafs.marlo.data.model.User; import org.cgiar.ccafs.marlo.security.Permission; import org.cgiar.ccafs.marlo.utils.APConfig; import org.cgiar.ccafs.marlo.utils.AutoSaveReader; import org.cgiar.ccafs.marlo.validation.annualreport.FlagshipProgressValidator; import java.io.BufferedReader; import java.io.FileReader; import java.nio.file.Path; import java.nio.file.Paths; import java.util.ArrayList; import java.util.Calendar; import java.util.Collection; import java.util.Comparator; import java.util.HashSet; import java.util.List; import java.util.Set; import java.util.stream.Collectors; import javax.inject.Inject; import com.google.gson.Gson; import com.google.gson.GsonBuilder; import com.google.gson.JsonObject; import org.apache.commons.lang3.StringUtils; /** * @author Hermes Jimnez - CIAT/CCAFS */ public class FlagshipProgressAction extends BaseAction { private static final long serialVersionUID = -6827326398431411479L; // Managers private GlobalUnitManager crpManager; private LiaisonInstitutionManager liaisonInstitutionManager; private ReportSynthesisManager reportSynthesisManager; private AuditLogManager auditLogManager; private UserManager userManager; private CrpProgramManager crpProgramManager; private FlagshipProgressValidator validator; private ProjectFocusManager projectFocusManager; private ProjectManager projectManager; private ReportSynthesisFlagshipProgressManager reportSynthesisFlagshipProgressManager; private ReportSynthesisFlagshipProgressMilestoneManager reportSynthesisFlagshipProgressMilestoneManager; private CrpMilestoneManager crpMilestoneManager; private PhaseManager phaseManager; // variables private String transaction; private ReportSynthesis reportSynthesis; private Long liaisonInstitutionID; private Long synthesisID; private LiaisonInstitution liaisonInstitution; private GlobalUnit loggedCrp; private List<LiaisonInstitution> liaisonInstitutions; private List<CrpProgramOutcome> outcomes; private List<CrpProgram> flagships; @Inject public FlagshipProgressAction(APConfig config, GlobalUnitManager crpManager, LiaisonInstitutionManager liaisonInstitutionManager, ReportSynthesisManager reportSynthesisManager, AuditLogManager auditLogManager, UserManager userManager, CrpProgramManager crpProgramManager, FlagshipProgressValidator validator, ProjectFocusManager projectFocusManager, ProjectManager projectManager, ReportSynthesisFlagshipProgressManager reportSynthesisFlagshipProgressManager, ReportSynthesisFlagshipProgressMilestoneManager reportSynthesisFlagshipProgressMilestoneManager, CrpMilestoneManager crpMilestoneManager, PhaseManager phaseManager) { super(config); this.crpManager = crpManager; this.liaisonInstitutionManager = liaisonInstitutionManager; this.reportSynthesisManager = reportSynthesisManager; this.auditLogManager = auditLogManager; this.userManager = userManager; this.crpProgramManager = crpProgramManager; this.validator = validator; this.projectFocusManager = projectFocusManager; this.projectManager = projectManager; this.reportSynthesisFlagshipProgressManager = reportSynthesisFlagshipProgressManager; this.reportSynthesisFlagshipProgressMilestoneManager = reportSynthesisFlagshipProgressMilestoneManager; this.crpMilestoneManager = crpMilestoneManager; this.phaseManager = phaseManager; } public Long firstFlagship() { List<LiaisonInstitution> liaisonInstitutions = new ArrayList<>(loggedCrp.getLiaisonInstitutions().stream() .filter(c -> c.getCrpProgram() != null && c.isActive() && c.getCrpProgram().getProgramType() == ProgramType.FLAGSHIP_PROGRAM_TYPE.getValue()) .collect(Collectors.toList())); liaisonInstitutions.sort(Comparator.comparing(LiaisonInstitution::getAcronym)); long liaisonInstitutionId = liaisonInstitutions.get(0).getId(); return liaisonInstitutionId; } private Path getAutoSaveFilePath() { String composedClassName = reportSynthesis.getClass().getSimpleName(); String actionFile = this.getActionName().replace("/", "_"); String autoSaveFile = reportSynthesis.getId() + "_" + composedClassName + "_" + this.getActualPhase().getDescription() + "_" + this.getActualPhase().getYear() + "_" + actionFile + ".json"; return Paths.get(config.getAutoSaveFolder() + autoSaveFile); } public List<ProjectMilestone> getContributions(long milestoneID) { List<ProjectMilestone> milestones = new ArrayList<>(); Set<ProjectMilestone> milestonesSet = new HashSet<>(); CrpMilestone crpMilestone = crpMilestoneManager.getCrpMilestoneById(milestoneID); List<ProjectMilestone> projectMilestones = crpMilestone.getProjectMilestones().stream() .filter(c -> c.isActive() && c.getProjectOutcome().getPhase() != null && c.getProjectOutcome().getPhase().equals(this.getActualPhase())) .collect(Collectors.toList()); for (ProjectMilestone projectMilestone : projectMilestones) { projectMilestone.getProjectOutcome().getProject().getProjecInfoPhase(this.getActualPhase()); if (projectMilestone.getProjectOutcome().isActive()) { Project project = projectMilestone.getProjectOutcome().getProject(); if (project.getProjecInfoPhase(this.getActualPhase()) != null) { if (project.getProjecInfoPhase(this.getActualPhase()).getStatus().longValue() == Long .parseLong(ProjectStatusEnum.Ongoing.getStatusId()) || project.getProjecInfoPhase(this.getActualPhase()).getStatus().longValue() == Long .parseLong(ProjectStatusEnum.Extended.getStatusId())) { if (project.getProjecInfoPhase(this.getActualPhase()).getEndDate() != null) { Calendar cal = Calendar.getInstance(); cal.setTime(project.getProjecInfoPhase(this.getActualPhase()).getEndDate()); if (cal.get(Calendar.YEAR) >= this.getActualPhase().getYear()) { milestonesSet.add(projectMilestone); } } } } } } milestones.addAll(milestonesSet); return milestones; } public List<CrpProgram> getFlagships() { return flagships; } public int getIndex(Long crpMilestoneID) { if (reportSynthesis.getReportSynthesisFlagshipProgress().getMilestones() != null) { int i = 0; for (ReportSynthesisFlagshipProgressMilestone flagshipProgressMilestone : reportSynthesis .getReportSynthesisFlagshipProgress().getMilestones()) { if (flagshipProgressMilestone != null && flagshipProgressMilestone.getCrpMilestone() != null && flagshipProgressMilestone.getCrpMilestone().getId() != null) { if (flagshipProgressMilestone.getCrpMilestone().getId().longValue() == crpMilestoneID .longValue()) { return i; } } i++; } } else { reportSynthesis.getReportSynthesisFlagshipProgress().setMilestones(new ArrayList<>()); } ReportSynthesisFlagshipProgressMilestone flagshipProgressMilestone = new ReportSynthesisFlagshipProgressMilestone(); flagshipProgressMilestone.setCrpMilestone(crpMilestoneManager.getCrpMilestoneById(crpMilestoneID)); flagshipProgressMilestone .setReportSynthesisFlagshipProgress(reportSynthesis.getReportSynthesisFlagshipProgress()); reportSynthesis.getReportSynthesisFlagshipProgress().getMilestones().add(flagshipProgressMilestone); return this.getIndex(crpMilestoneID); } public LiaisonInstitution getLiaisonInstitution() { return liaisonInstitution; } public Long getLiaisonInstitutionID() { return liaisonInstitutionID; } public List<LiaisonInstitution> getLiaisonInstitutions() { return liaisonInstitutions; } public GlobalUnit getLoggedCrp() { return loggedCrp; } public List<CrpProgramOutcome> getOutcomes() { return outcomes; } public ReportSynthesis getReportSynthesis() { return reportSynthesis; } public ReportSynthesisFlagshipProgressMilestone getReportSynthesisFlagshipProgressMilestone( Long crpMilestoneID) { return reportSynthesis.getReportSynthesisFlagshipProgress().getMilestones() .get(this.getIndex(crpMilestoneID)); } public ReportSynthesisFlagshipProgressMilestone getReportSynthesisFlagshipProgressProgram(Long crpMilestoneID, Long crpProgramID) { List<ReportSynthesisFlagshipProgressMilestone> flagshipProgressMilestonesPrev = reportSynthesisFlagshipProgressMilestoneManager .findByProgram(crpProgramID); List<ReportSynthesisFlagshipProgressMilestone> flagshipProgressMilestones = flagshipProgressMilestonesPrev .stream() .filter(c -> c.getCrpMilestone().getId().longValue() == crpMilestoneID.longValue() && c.isActive()) .collect(Collectors.toList()); if (!flagshipProgressMilestones.isEmpty()) { return flagshipProgressMilestones.get(0); } return new ReportSynthesisFlagshipProgressMilestone(); } public Long getSynthesisID() { return synthesisID; } public String getTransaction() { return transaction; } public boolean isFlagship() { boolean isFP = false; if (liaisonInstitution != null) { if (liaisonInstitution.getCrpProgram() != null) { CrpProgram crpProgram = crpProgramManager .getCrpProgramById(liaisonInstitution.getCrpProgram().getId().longValue()); if (crpProgram.getProgramType() == ProgramType.FLAGSHIP_PROGRAM_TYPE.getValue()) { isFP = true; } } } return isFP; } @Override public boolean isPMU() { boolean isFP = false; if (liaisonInstitution != null) { if (liaisonInstitution.getCrpProgram() == null) { isFP = true; } } return isFP; } public void loadFlagShipBudgetInfo(CrpProgram crpProgram) { List<ProjectFocus> projects = crpProgram.getProjectFocuses().stream() .filter(c -> c.getProject().isActive() && c.isActive()).collect(Collectors.toList()); Set<Project> myProjects = new HashSet(); for (ProjectFocus projectFocus : projects) { Project project = projectFocus.getProject(); if (project.isActive()) { project.setProjectInfo(project.getProjecInfoPhase(this.getActualPhase())); if (project.getProjectInfo() != null && project.getProjectInfo().getStatus() != null) { if (project.getProjectInfo().getStatus().intValue() == Integer .parseInt(ProjectStatusEnum.Ongoing.getStatusId()) || project.getProjectInfo().getStatus().intValue() == Integer .parseInt(ProjectStatusEnum.Extended.getStatusId())) { myProjects.add(project); } } } } for (Project project : myProjects) { double w1 = project.getCoreBudget(this.getActualPhase().getYear(), this.getActualPhase()); double w3 = project.getW3Budget(this.getActualPhase().getYear(), this.getActualPhase()); double bilateral = project.getBilateralBudget(this.getActualPhase().getYear(), this.getActualPhase()); List<ProjectBudgetsFlagship> budgetsFlagships = project.getProjectBudgetsFlagships().stream() .filter(c -> c.isActive() && c.getCrpProgram().getId().longValue() == crpProgram.getId().longValue() && c.getPhase().equals(this.getActualPhase()) && c.getYear() == this.getActualPhase().getYear()) .collect(Collectors.toList()); double percentageW1 = 0; double percentageW3 = 0; double percentageB = 0; if (!this.getCountProjectFlagships(project.getId())) { percentageW1 = 100; percentageW3 = 100; percentageB = 100; } for (ProjectBudgetsFlagship projectBudgetsFlagship : budgetsFlagships) { switch (projectBudgetsFlagship.getBudgetType().getId().intValue()) { case 1: percentageW1 = percentageW1 + projectBudgetsFlagship.getAmount(); break; case 2: percentageW3 = percentageW3 + projectBudgetsFlagship.getAmount(); break; case 3: percentageB = percentageB + projectBudgetsFlagship.getAmount(); break; default: break; } } w1 = w1 * (percentageW1) / 100; w3 = w3 * (percentageW3) / 100; bilateral = bilateral * (percentageB) / 100; crpProgram.setW1(crpProgram.getW1() + w1); crpProgram.setW3(crpProgram.getW3() + w3 + bilateral); } } public void loadTablePMU() { flagships = loggedCrp.getCrpPrograms().stream() .filter(c -> c.isActive() && c.getProgramType() == ProgramType.FLAGSHIP_PROGRAM_TYPE.getValue()) .collect(Collectors.toList()); flagships.sort((p1, p2) -> p1.getAcronym().compareTo(p2.getAcronym())); for (CrpProgram crpProgram : flagships) { crpProgram.setMilestones(new ArrayList<>()); crpProgram.setW1(new Double(0)); crpProgram.setW3(new Double(0)); crpProgram.setOutcomes(crpProgram.getCrpProgramOutcomes().stream() .filter(c -> c.isActive() && c.getPhase().equals(this.getActualPhase())) .collect(Collectors.toList())); List<CrpProgramOutcome> validOutcomes = new ArrayList<>(); for (CrpProgramOutcome crpProgramOutcome : crpProgram.getOutcomes()) { crpProgramOutcome.setMilestones(crpProgramOutcome.getCrpMilestones().stream() .filter(c -> c.isActive() && c.getYear().intValue() == this.getActualPhase().getYear()) .collect(Collectors.toList())); crpProgramOutcome.setSubIdos(crpProgramOutcome.getCrpOutcomeSubIdos().stream() .filter(c -> c.isActive()).collect(Collectors.toList())); crpProgram.getMilestones().addAll(crpProgramOutcome.getMilestones()); if (!crpProgram.getMilestones().isEmpty()) { validOutcomes.add(crpProgramOutcome); } } crpProgram.setOutcomes(validOutcomes); this.loadFlagShipBudgetInfo(crpProgram); } } @Override public String next() { String result = this.save(); if (result.equals(BaseAction.SUCCESS)) { return BaseAction.NEXT; } else { return result; } } @Override public void prepare() throws Exception { // Get current CRP loggedCrp = (GlobalUnit) this.getSession().get(APConstants.SESSION_CRP); loggedCrp = crpManager.getGlobalUnitById(loggedCrp.getId()); Phase phase = this.getActualPhase(); // If there is a history version being loaded if (this.getRequest().getParameter(APConstants.TRANSACTION_ID) != null) { transaction = StringUtils.trim(this.getRequest().getParameter(APConstants.TRANSACTION_ID)); ReportSynthesis history = (ReportSynthesis) auditLogManager.getHistory(transaction); if (history != null) { reportSynthesis = history; synthesisID = reportSynthesis.getId(); } else { this.transaction = null; this.setTransaction("-1"); } } else { // Get Liaison institution ID Parameter try { liaisonInstitutionID = Long.parseLong(StringUtils .trim(this.getRequest().getParameter(APConstants.LIAISON_INSTITUTION_REQUEST_ID))); } catch (NumberFormatException e) { User user = userManager.getUser(this.getCurrentUser().getId()); if (user.getLiasonsUsers() != null || !user.getLiasonsUsers().isEmpty()) { List<LiaisonUser> liaisonUsers = new ArrayList<>(user.getLiasonsUsers().stream() .filter(lu -> lu.isActive() && lu.getLiaisonInstitution().isActive() && lu.getLiaisonInstitution().getCrp().getId() == loggedCrp.getId() && lu.getLiaisonInstitution().getInstitution() == null) .collect(Collectors.toList())); if (!liaisonUsers.isEmpty()) { boolean isLeader = false; for (LiaisonUser liaisonUser : liaisonUsers) { LiaisonInstitution institution = liaisonUser.getLiaisonInstitution(); if (institution.isActive()) { if (institution.getCrpProgram() != null) { if (institution.getCrpProgram() .getProgramType() == ProgramType.FLAGSHIP_PROGRAM_TYPE.getValue()) { liaisonInstitutionID = institution.getId(); isLeader = true; break; } } else { if (institution.getAcronym().equals("PMU")) { liaisonInstitutionID = institution.getId(); isLeader = true; break; } } } } if (!isLeader) { liaisonInstitutionID = this.firstFlagship(); } } else { liaisonInstitutionID = this.firstFlagship(); } } else { liaisonInstitutionID = this.firstFlagship(); } } try { synthesisID = Long.parseLong( StringUtils.trim(this.getRequest().getParameter(APConstants.REPORT_SYNTHESIS_ID))); reportSynthesis = reportSynthesisManager.getReportSynthesisById(synthesisID); if (!reportSynthesis.getPhase().equals(phase)) { reportSynthesis = reportSynthesisManager.findSynthesis(phase.getId(), liaisonInstitutionID); if (reportSynthesis == null) { reportSynthesis = this.createReportSynthesis(phase.getId(), liaisonInstitutionID); } synthesisID = reportSynthesis.getId(); } } catch (Exception e) { reportSynthesis = reportSynthesisManager.findSynthesis(phase.getId(), liaisonInstitutionID); if (reportSynthesis == null) { reportSynthesis = this.createReportSynthesis(phase.getId(), liaisonInstitutionID); } synthesisID = reportSynthesis.getId(); } } if (reportSynthesis != null) { ReportSynthesis reportSynthesisDB = reportSynthesisManager .getReportSynthesisById(reportSynthesis.getId()); synthesisID = reportSynthesisDB.getId(); liaisonInstitutionID = reportSynthesisDB.getLiaisonInstitution().getId(); liaisonInstitution = liaisonInstitutionManager.getLiaisonInstitutionById(liaisonInstitutionID); Path path = this.getAutoSaveFilePath(); // Verify if there is a Draft file if (path.toFile().exists() && this.getCurrentUser().isAutoSave()) { BufferedReader reader; reader = new BufferedReader(new FileReader(path.toFile())); Gson gson = new GsonBuilder().create(); JsonObject jReader = gson.fromJson(reader, JsonObject.class); reader.close(); AutoSaveReader autoSaveReader = new AutoSaveReader(); reportSynthesis = (ReportSynthesis) autoSaveReader.readFromJson(jReader); synthesisID = reportSynthesis.getId(); this.setDraft(true); } else { this.setDraft(false); // Check if relation is null -create it if (reportSynthesis.getReportSynthesisFlagshipProgress() == null) { ReportSynthesisFlagshipProgress flagshipProgress = new ReportSynthesisFlagshipProgress(); // create one to one relation reportSynthesis.setReportSynthesisFlagshipProgress(flagshipProgress); flagshipProgress.setReportSynthesis(reportSynthesis); // save the changes reportSynthesis = reportSynthesisManager.saveReportSynthesis(reportSynthesis); } if (this.isFlagship()) { // Setu up Milestones Flagship Table if (reportSynthesis.getReportSynthesisFlagshipProgress() != null) { reportSynthesis.getReportSynthesisFlagshipProgress() .setMilestones(reportSynthesis.getReportSynthesisFlagshipProgress() .getReportSynthesisFlagshipProgressMilestones().stream() .filter(c -> c.isActive() && c.getCrpMilestone() != null) .collect(Collectors.toList())); reportSynthesis.getReportSynthesisFlagshipProgress().getMilestones().sort( (p1, p2) -> p1.getCrpMilestone().getId().compareTo(p2.getCrpMilestone().getId())); } } else { reportSynthesis.getReportSynthesisFlagshipProgress() .setMilestones(reportSynthesis.getReportSynthesisFlagshipProgress() .getReportSynthesisFlagshipProgressMilestones().stream() .filter(c -> c.isActive()).collect(Collectors.toList())); } } } // Get the Outcome milestones outcomes = new ArrayList<>(); List<CrpProgramOutcome> outcomesList = new ArrayList<>(); Set<CrpProgramOutcome> outcomesSet = new HashSet<>(); for (CrpProgram crpProgram : loggedCrp.getCrpPrograms().stream().filter(c -> c.isActive()) .collect(Collectors.toList())) { outcomesList.addAll(crpProgram.getCrpProgramOutcomes().stream() .filter(c -> c.isActive() && c.getPhase().equals(this.getActualPhase()) && liaisonInstitution.getCrpProgram() != null && liaisonInstitution.getCrpProgram().getId().equals(c.getCrpProgram().getId())) .collect(Collectors.toList())); } for (CrpProgramOutcome outcome : outcomesList) { outcome.setMilestones(outcome.getCrpMilestones().stream() .filter(c -> c.isActive() && c.getYear().intValue() == this.getActualPhase().getYear()) .collect(Collectors.toList())); if (!outcome.getMilestones().isEmpty()) { outcomesSet.add(outcome); } } outcomes.addAll(outcomesSet); outcomes.sort((p1, p2) -> p1.getId().compareTo(p2.getId())); // Get the list of liaison institutions Flagships and PMU. liaisonInstitutions = loggedCrp.getLiaisonInstitutions().stream() .filter(c -> c.getCrpProgram() != null && c.isActive() && c.getCrpProgram().getProgramType() == ProgramType.FLAGSHIP_PROGRAM_TYPE.getValue()) .collect(Collectors.toList()); liaisonInstitutions.sort(Comparator.comparing(LiaisonInstitution::getAcronym)); if (this.isPMU()) { this.loadTablePMU(); } // ADD PMU as liasion Institution too liaisonInstitutions.addAll(loggedCrp.getLiaisonInstitutions().stream() .filter(c -> c.getCrpProgram() == null && c.isActive() && c.getAcronym().equals("PMU")) .collect(Collectors.toList())); // Base Permission String params[] = { loggedCrp.getAcronym(), reportSynthesis.getId() + "" }; this.setBasePermission(this.getText(Permission.REPORT_SYNTHESIS_FLAGSHIP_PROGRESS_BASE_PERMISSION, params)); if (this.isHttpPost()) { if (reportSynthesis.getReportSynthesisFlagshipProgress().getMilestones() != null) { reportSynthesis.getReportSynthesisFlagshipProgress().getMilestones().clear(); } } } @Override public String save() { if (this.hasPermission("canEdit")) { ReportSynthesisFlagshipProgress flagshipProgressDB = reportSynthesisManager .getReportSynthesisById(synthesisID).getReportSynthesisFlagshipProgress(); if (this.isFlagship()) { this.saveFlagshipProgressNewData(flagshipProgressDB); flagshipProgressDB.setSummary(reportSynthesis.getReportSynthesisFlagshipProgress().getSummary()); } flagshipProgressDB = reportSynthesisFlagshipProgressManager .saveReportSynthesisFlagshipProgress(flagshipProgressDB); List<String> relationsName = new ArrayList<>(); reportSynthesis = reportSynthesisManager.getReportSynthesisById(synthesisID); /** * The following is required because we need to update something on the @ReportSynthesis if we want a row created * in the auditlog table. */ this.setModificationJustification(reportSynthesis); reportSynthesisManager.save(reportSynthesis, this.getActionName(), relationsName, this.getActualPhase()); Path path = this.getAutoSaveFilePath(); if (path.toFile().exists()) { path.toFile().delete(); } Collection<String> messages = this.getActionMessages(); if (!this.getInvalidFields().isEmpty()) { this.setActionMessages(null); // this.addActionMessage(Map.toString(this.getInvalidFields().toArray())); List<String> keys = new ArrayList<String>(this.getInvalidFields().keySet()); for (String key : keys) { this.addActionMessage(key + ": " + this.getInvalidFields().get(key)); } } else { this.addActionMessage("message:" + this.getText("saving.saved")); } return SUCCESS; } else { return NOT_AUTHORIZED; } } public void saveFlagshipProgressNewData(ReportSynthesisFlagshipProgress flagshipProgressDB) { if (reportSynthesis.getReportSynthesisFlagshipProgress().getMilestones() == null) { reportSynthesis.getReportSynthesisFlagshipProgress().setMilestones(new ArrayList<>()); } for (ReportSynthesisFlagshipProgressMilestone flagshipProgressMilestone : reportSynthesis .getReportSynthesisFlagshipProgress().getMilestones()) { ReportSynthesisFlagshipProgressMilestone flagshipProgressMilestoneNew = null; if (flagshipProgressMilestone != null) { if (flagshipProgressMilestone.getCrpMilestone() != null && flagshipProgressMilestone.getCrpMilestone().getId() > 0) { flagshipProgressMilestone.setCrpMilestone(crpMilestoneManager .getCrpMilestoneById(flagshipProgressMilestone.getCrpMilestone().getId())); } if (flagshipProgressMilestone.getId() == null) { flagshipProgressMilestoneNew = new ReportSynthesisFlagshipProgressMilestone(); flagshipProgressMilestoneNew.setReportSynthesisFlagshipProgress(flagshipProgressDB); } else { flagshipProgressMilestoneNew = reportSynthesisFlagshipProgressMilestoneManager .getReportSynthesisFlagshipProgressMilestoneById(flagshipProgressMilestone.getId()); } flagshipProgressMilestoneNew.setEvidence(flagshipProgressMilestone.getEvidence()); flagshipProgressMilestoneNew.setMilestonesStatus(flagshipProgressMilestone.getMilestonesStatus()); flagshipProgressMilestoneNew.setCrpMilestone(flagshipProgressMilestone.getCrpMilestone()); flagshipProgressMilestoneNew = reportSynthesisFlagshipProgressMilestoneManager .saveReportSynthesisFlagshipProgressMilestone(flagshipProgressMilestoneNew); } } } public void setFlagships(List<CrpProgram> flagships) { this.flagships = flagships; } public void setLiaisonInstitution(LiaisonInstitution liaisonInstitution) { this.liaisonInstitution = liaisonInstitution; } public void setLiaisonInstitutionID(Long liaisonInstitutionID) { this.liaisonInstitutionID = liaisonInstitutionID; } public void setLiaisonInstitutions(List<LiaisonInstitution> liaisonInstitutions) { this.liaisonInstitutions = liaisonInstitutions; } public void setLoggedCrp(GlobalUnit loggedCrp) { this.loggedCrp = loggedCrp; } public void setOutcomes(List<CrpProgramOutcome> outcomes) { this.outcomes = outcomes; } public void setReportSynthesis(ReportSynthesis reportSynthesis) { this.reportSynthesis = reportSynthesis; } public void setSynthesisID(Long synthesisID) { this.synthesisID = synthesisID; } public void setTransaction(String transaction) { this.transaction = transaction; } @Override public void validate() { if (save) { validator.validate(this, reportSynthesis, true); } } }