org.biopax.validator.rules.BiopaxElementIdRule.java Source code

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Here is the source code for org.biopax.validator.rules.BiopaxElementIdRule.java

Source

package org.biopax.validator.rules;

/*
 * #%L
 * BioPAX Validator
 * %%
 * Copyright (C) 2008 - 2013 University of Toronto (baderlab.org) and Memorial Sloan-Kettering Cancer Center (cbio.mskcc.org)
 * %%
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU Lesser General Public License as 
 * published by the Free Software Foundation, either version 3 of the 
 * License, or (at your option) any later version.
 * 
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Lesser Public License for more details.
 * 
 * You should have received a copy of the GNU General Lesser Public 
 * License along with this program.  If not, see
 * <http://www.gnu.org/licenses/lgpl-3.0.html>.
 * #L%
 */

import java.net.URI;

import org.biopax.paxtools.model.BioPAXElement;
import org.biopax.validator.api.AbstractRule;
import org.biopax.validator.api.beans.Validation;
import org.springframework.stereotype.Component;

@Component
public class BiopaxElementIdRule extends AbstractRule<BioPAXElement> {
    public boolean canCheck(Object thing) {
        return thing instanceof BioPAXElement;
    }

    public void check(final Validation validation, BioPAXElement thing) {
        String rdfid = thing.getUri();
        if (rdfid != null) {
            try {
                URI.create(rdfid);
            } catch (IllegalArgumentException e) {
                error(validation, thing, "invalid.rdf.id", false, "not a valid URI: " + rdfid);
            }
        } else
            error(validation, thing, "invalid.rdf.id", false, "null value");
    }

}