net.thevis.groovyhadoop.backport.CombineFileInputFormat.java Source code

Java tutorial

Introduction

Here is the source code for net.thevis.groovyhadoop.backport.CombineFileInputFormat.java

Source

/**
 * Licensed to the Apache Software Foundation (ASF) under one
 * or more contributor license agreements.  See the NOTICE file
 * distributed with this work for additional information
 * regarding copyright ownership.  The ASF licenses this file
 * to you under the Apache License, Version 2.0 (the
 * "License"); you may not use this file except in compliance
 * with the License.  You may obtain a copy of the License at
 *
 *     http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */

package net.thevis.groovyhadoop.backport;

import java.io.IOException;
import java.util.ArrayList;
import java.util.LinkedList;
import java.util.HashSet;
import java.util.List;
import java.util.HashMap;
import java.util.Set;
import java.util.Iterator;
import java.util.Map;

import org.apache.hadoop.conf.Configuration;
import org.apache.hadoop.fs.FileSystem;
import org.apache.hadoop.fs.FileUtil;
import org.apache.hadoop.fs.Path;
import org.apache.hadoop.fs.BlockLocation;
import org.apache.hadoop.fs.FileStatus;
import org.apache.hadoop.fs.PathFilter;
import org.apache.hadoop.mapreduce.InputFormat;
import org.apache.hadoop.mapreduce.InputSplit;
import org.apache.hadoop.mapreduce.JobContext;
import org.apache.hadoop.mapreduce.RecordReader;
import org.apache.hadoop.mapreduce.TaskAttemptContext;
import org.apache.hadoop.mapreduce.lib.input.FileInputFormat;
import org.apache.hadoop.net.NodeBase;
import org.apache.hadoop.net.NetworkTopology;

/**
 * An abstract {@link InputFormat} that returns {@link CombineFileSplit}'s in 
 * {@link InputFormat#getSplits(JobContext)} method. 
 * 
 * Splits are constructed from the files under the input paths. 
 * A split cannot have files from different pools.
 * Each split returned may contain blocks from different files.
 * If a maxSplitSize is specified, then blocks on the same node are
 * combined to form a single split. Blocks that are left over are
 * then combined with other blocks in the same rack. 
 * If maxSplitSize is not specified, then blocks from the same rack
 * are combined in a single split; no attempt is made to create
 * node-local splits.
 * If the maxSplitSize is equal to the block size, then this class
 * is similar to the default splitting behavior in Hadoop: each
 * block is a locally processed split.
 * Subclasses implement 
 * {@link InputFormat#createRecordReader(InputSplit, TaskAttemptContext)}
 * to construct <code>RecordReader</code>'s for 
 * <code>CombineFileSplit</code>'s.
 * 
 * @see CombineFileSplit
 */
public abstract class CombineFileInputFormat<K, V> extends FileInputFormat<K, V> {

    public static final String SPLIT_MINSIZE_PERNODE = "mapreduce.input.fileinputformat.split.minsize.per.node";
    public static final String SPLIT_MINSIZE_PERRACK = "mapreduce.input.fileinputformat.split.minsize.per.rack";
    // ability to limit the size of a single split
    private long maxSplitSize = 0;
    private long minSplitSizeNode = 0;
    private long minSplitSizeRack = 0;

    // A pool of input paths filters. A split cannot have blocks from files
    // across multiple pools.
    private ArrayList<MultiPathFilter> pools = new ArrayList<MultiPathFilter>();

    // mapping from a rack name to the set of Nodes in the rack 
    private HashMap<String, Set<String>> rackToNodes = new HashMap<String, Set<String>>();

    /**
     * Specify the maximum size (in bytes) of each split. Each split is
     * approximately equal to the specified size.
     */
    protected void setMaxSplitSize(long maxSplitSize) {
        this.maxSplitSize = maxSplitSize;
    }

    /**
     * Specify the minimum size (in bytes) of each split per node.
     * This applies to data that is left over after combining data on a single
     * node into splits that are of maximum size specified by maxSplitSize.
     * This leftover data will be combined into its own split if its size
     * exceeds minSplitSizeNode.
     */
    protected void setMinSplitSizeNode(long minSplitSizeNode) {
        this.minSplitSizeNode = minSplitSizeNode;
    }

    /**
     * Specify the minimum size (in bytes) of each split per rack.
     * This applies to data that is left over after combining data on a single
     * rack into splits that are of maximum size specified by maxSplitSize.
     * This leftover data will be combined into its own split if its size
     * exceeds minSplitSizeRack.
     */
    protected void setMinSplitSizeRack(long minSplitSizeRack) {
        this.minSplitSizeRack = minSplitSizeRack;
    }

    /**
     * Create a new pool and add the filters to it.
     * A split cannot have files from different pools.
     */
    protected void createPool(List<PathFilter> filters) {
        pools.add(new MultiPathFilter(filters));
    }

    /**
     * Create a new pool and add the filters to it. 
     * A pathname can satisfy any one of the specified filters.
     * A split cannot have files from different pools.
     */
    protected void createPool(PathFilter... filters) {
        MultiPathFilter multi = new MultiPathFilter();
        for (PathFilter f : filters) {
            multi.add(f);
        }
        pools.add(multi);
    }

    /**
     * default constructor
     */
    public CombineFileInputFormat() {
    }

    @Override
    public List<InputSplit> getSplits(JobContext job) throws IOException {

        long minSizeNode = 0;
        long minSizeRack = 0;
        long maxSize = 0;
        Configuration conf = job.getConfiguration();

        // the values specified by setxxxSplitSize() takes precedence over the
        // values that might have been specified in the config
        if (minSplitSizeNode != 0) {
            minSizeNode = minSplitSizeNode;
        } else {
            minSizeNode = conf.getLong(SPLIT_MINSIZE_PERNODE, 0);
        }
        if (minSplitSizeRack != 0) {
            minSizeRack = minSplitSizeRack;
        } else {
            minSizeRack = conf.getLong(SPLIT_MINSIZE_PERRACK, 0);
        }
        if (maxSplitSize != 0) {
            maxSize = maxSplitSize;
        } else {
            maxSize = conf.getLong("mapreduce.input.fileinputformat.split.maxsize", 0);
        }
        if (minSizeNode != 0 && maxSize != 0 && minSizeNode > maxSize) {
            throw new IOException("Minimum split size pernode " + minSizeNode
                    + " cannot be larger than maximum split size " + maxSize);
        }
        if (minSizeRack != 0 && maxSize != 0 && minSizeRack > maxSize) {
            throw new IOException("Minimum split size per rack" + minSizeRack
                    + " cannot be larger than maximum split size " + maxSize);
        }
        if (minSizeRack != 0 && minSizeNode > minSizeRack) {
            throw new IOException("Minimum split size per node" + minSizeNode
                    + " cannot be smaller than minimum split " + "size per rack " + minSizeRack);
        }

        // all the files in input set
        Path[] paths = FileUtil.stat2Paths(listStatus(job).toArray(new FileStatus[0]));
        List<InputSplit> splits = new ArrayList<InputSplit>();
        if (paths.length == 0) {
            return splits;
        }

        // Convert them to Paths first. This is a costly operation and 
        // we should do it first, otherwise we will incur doing it multiple
        // times, one time each for each pool in the next loop.
        List<Path> newpaths = new LinkedList<Path>();
        for (int i = 0; i < paths.length; i++) {
            Path p = new Path(paths[i].toUri().getPath());
            newpaths.add(p);
        }
        paths = null;

        // In one single iteration, process all the paths in a single pool.
        // Processing one pool at a time ensures that a split contains paths
        // from a single pool only.
        for (MultiPathFilter onepool : pools) {
            ArrayList<Path> myPaths = new ArrayList<Path>();

            // pick one input path. If it matches all the filters in a pool,
            // add it to the output set
            for (Iterator<Path> iter = newpaths.iterator(); iter.hasNext();) {
                Path p = iter.next();
                if (onepool.accept(p)) {
                    myPaths.add(p); // add it to my output set
                    iter.remove();
                }
            }
            // create splits for all files in this pool.
            getMoreSplits(conf, myPaths.toArray(new Path[myPaths.size()]), maxSize, minSizeNode, minSizeRack,
                    splits);
        }

        // create splits for all files that are not in any pool.
        getMoreSplits(conf, newpaths.toArray(new Path[newpaths.size()]), maxSize, minSizeNode, minSizeRack, splits);

        // free up rackToNodes map
        rackToNodes.clear();
        return splits;
    }

    /**
     * Return all the splits in the specified set of paths
     */
    private void getMoreSplits(Configuration conf, Path[] paths, long maxSize, long minSizeNode, long minSizeRack,
            List<InputSplit> splits) throws IOException {

        // all blocks for all the files in input set
        OneFileInfo[] files;

        // mapping from a rack name to the list of blocks it has
        HashMap<String, List<OneBlockInfo>> rackToBlocks = new HashMap<String, List<OneBlockInfo>>();

        // mapping from a block to the nodes on which it has replicas
        HashMap<OneBlockInfo, String[]> blockToNodes = new HashMap<OneBlockInfo, String[]>();

        // mapping from a node to the list of blocks that it contains
        HashMap<String, List<OneBlockInfo>> nodeToBlocks = new HashMap<String, List<OneBlockInfo>>();

        files = new OneFileInfo[paths.length];
        if (paths.length == 0) {
            return;
        }

        // populate all the blocks for all files
        long totLength = 0;
        for (int i = 0; i < paths.length; i++) {
            files[i] = new OneFileInfo(paths[i], conf, rackToBlocks, blockToNodes, nodeToBlocks, rackToNodes);
            totLength += files[i].getLength();
        }

        ArrayList<OneBlockInfo> validBlocks = new ArrayList<OneBlockInfo>();
        ArrayList<String> nodes = new ArrayList<String>();
        long curSplitSize = 0;

        // process all nodes and create splits that are local
        // to a node. 
        for (Iterator<Map.Entry<String, List<OneBlockInfo>>> iter = nodeToBlocks.entrySet().iterator(); iter
                .hasNext();) {

            Map.Entry<String, List<OneBlockInfo>> one = iter.next();
            nodes.add(one.getKey());
            List<OneBlockInfo> blocksInNode = one.getValue();

            // for each block, copy it into validBlocks. Delete it from 
            // blockToNodes so that the same block does not appear in 
            // two different splits.
            for (OneBlockInfo oneblock : blocksInNode) {
                if (blockToNodes.containsKey(oneblock)) {
                    validBlocks.add(oneblock);
                    blockToNodes.remove(oneblock);
                    curSplitSize += oneblock.length;

                    // if the accumulated split size exceeds the maximum, then 
                    // create this split.
                    if (maxSize != 0 && curSplitSize >= maxSize) {
                        // create an input split and add it to the splits array
                        addCreatedSplit(splits, nodes, validBlocks);
                        curSplitSize = 0;
                        validBlocks.clear();
                    }
                }
            }
            // if there were any blocks left over and their combined size is
            // larger than minSplitNode, then combine them into one split.
            // Otherwise add them back to the unprocessed pool. It is likely 
            // that they will be combined with other blocks from the 
            // same rack later on.
            if (minSizeNode != 0 && curSplitSize >= minSizeNode) {
                // create an input split and add it to the splits array
                addCreatedSplit(splits, nodes, validBlocks);
            } else {
                for (OneBlockInfo oneblock : validBlocks) {
                    blockToNodes.put(oneblock, oneblock.hosts);
                }
            }
            validBlocks.clear();
            nodes.clear();
            curSplitSize = 0;
        }

        // if blocks in a rack are below the specified minimum size, then keep them
        // in 'overflow'. After the processing of all racks is complete, these 
        // overflow blocks will be combined into splits.
        ArrayList<OneBlockInfo> overflowBlocks = new ArrayList<OneBlockInfo>();
        ArrayList<String> racks = new ArrayList<String>();

        // Process all racks over and over again until there is no more work to do.
        while (blockToNodes.size() > 0) {

            // Create one split for this rack before moving over to the next rack. 
            // Come back to this rack after creating a single split for each of the 
            // remaining racks.
            // Process one rack location at a time, Combine all possible blocks that
            // reside on this rack as one split. (constrained by minimum and maximum
            // split size).

            // iterate over all racks 
            for (Iterator<Map.Entry<String, List<OneBlockInfo>>> iter = rackToBlocks.entrySet().iterator(); iter
                    .hasNext();) {

                Map.Entry<String, List<OneBlockInfo>> one = iter.next();
                racks.add(one.getKey());
                List<OneBlockInfo> blocks = one.getValue();

                // for each block, copy it into validBlocks. Delete it from 
                // blockToNodes so that the same block does not appear in 
                // two different splits.
                boolean createdSplit = false;
                for (OneBlockInfo oneblock : blocks) {
                    if (blockToNodes.containsKey(oneblock)) {
                        validBlocks.add(oneblock);
                        blockToNodes.remove(oneblock);
                        curSplitSize += oneblock.length;

                        // if the accumulated split size exceeds the maximum, then 
                        // create this split.
                        if (maxSize != 0 && curSplitSize >= maxSize) {
                            // create an input split and add it to the splits array
                            addCreatedSplit(splits, getHosts(racks), validBlocks);
                            createdSplit = true;
                            break;
                        }
                    }
                }

                // if we created a split, then just go to the next rack
                if (createdSplit) {
                    curSplitSize = 0;
                    validBlocks.clear();
                    racks.clear();
                    continue;
                }

                if (!validBlocks.isEmpty()) {
                    if (minSizeRack != 0 && curSplitSize >= minSizeRack) {
                        // if there is a minimum size specified, then create a single split
                        // otherwise, store these blocks into overflow data structure
                        addCreatedSplit(splits, getHosts(racks), validBlocks);
                    } else {
                        // There were a few blocks in this rack that 
                        // remained to be processed. Keep them in 'overflow' block list. 
                        // These will be combined later.
                        overflowBlocks.addAll(validBlocks);
                    }
                }
                curSplitSize = 0;
                validBlocks.clear();
                racks.clear();
            }
        }

        assert blockToNodes.isEmpty();
        assert curSplitSize == 0;
        assert validBlocks.isEmpty();
        assert racks.isEmpty();

        // Process all overflow blocks
        for (OneBlockInfo oneblock : overflowBlocks) {
            validBlocks.add(oneblock);
            curSplitSize += oneblock.length;

            // This might cause an exiting rack location to be re-added,
            // but it should be ok.
            for (int i = 0; i < oneblock.racks.length; i++) {
                racks.add(oneblock.racks[i]);
            }

            // if the accumulated split size exceeds the maximum, then 
            // create this split.
            if (maxSize != 0 && curSplitSize >= maxSize) {
                // create an input split and add it to the splits array
                addCreatedSplit(splits, getHosts(racks), validBlocks);
                curSplitSize = 0;
                validBlocks.clear();
                racks.clear();
            }
        }

        // Process any remaining blocks, if any.
        if (!validBlocks.isEmpty()) {
            addCreatedSplit(splits, getHosts(racks), validBlocks);
        }
    }

    /**
     * Create a single split from the list of blocks specified in validBlocks
     * Add this new split into splitList.
     */
    private void addCreatedSplit(List<InputSplit> splitList, List<String> locations,
            ArrayList<OneBlockInfo> validBlocks) {
        // create an input split
        Path[] fl = new Path[validBlocks.size()];
        long[] offset = new long[validBlocks.size()];
        long[] length = new long[validBlocks.size()];
        for (int i = 0; i < validBlocks.size(); i++) {
            fl[i] = validBlocks.get(i).onepath;
            offset[i] = validBlocks.get(i).offset;
            length[i] = validBlocks.get(i).length;
        }

        // add this split to the list that is returned
        CombineFileSplit thissplit = new CombineFileSplit(fl, offset, length, locations.toArray(new String[0]));
        splitList.add(thissplit);
    }

    /**
     * This is not implemented yet. 
     */
    public abstract RecordReader<K, V> createRecordReader(InputSplit split, TaskAttemptContext context)
            throws IOException;

    /**
     * information about one file from the File System
     */
    private static class OneFileInfo {
        private long fileSize; // size of the file
        private OneBlockInfo[] blocks; // all blocks in this file

        OneFileInfo(Path path, Configuration conf, HashMap<String, List<OneBlockInfo>> rackToBlocks,
                HashMap<OneBlockInfo, String[]> blockToNodes, HashMap<String, List<OneBlockInfo>> nodeToBlocks,
                HashMap<String, Set<String>> rackToNodes) throws IOException {
            this.fileSize = 0;

            // get block locations from file system
            FileSystem fs = path.getFileSystem(conf);
            FileStatus stat = fs.getFileStatus(path);
            BlockLocation[] locations = fs.getFileBlockLocations(stat, 0, stat.getLen());
            // create a list of all block and their locations
            if (locations == null) {
                blocks = new OneBlockInfo[0];
            } else {
                blocks = new OneBlockInfo[locations.length];
                for (int i = 0; i < locations.length; i++) {

                    fileSize += locations[i].getLength();
                    OneBlockInfo oneblock = new OneBlockInfo(path, locations[i].getOffset(),
                            locations[i].getLength(), locations[i].getHosts(), locations[i].getTopologyPaths());
                    blocks[i] = oneblock;

                    // add this block to the block --> node locations map
                    blockToNodes.put(oneblock, oneblock.hosts);

                    // add this block to the rack --> block map
                    for (int j = 0; j < oneblock.racks.length; j++) {
                        String rack = oneblock.racks[j];
                        List<OneBlockInfo> blklist = rackToBlocks.get(rack);
                        if (blklist == null) {
                            blklist = new ArrayList<OneBlockInfo>();
                            rackToBlocks.put(rack, blklist);
                        }
                        blklist.add(oneblock);
                        // Add this host to rackToNodes map
                        addHostToRack(rackToNodes, oneblock.racks[j], oneblock.hosts[j]);
                    }

                    // add this block to the node --> block map
                    for (int j = 0; j < oneblock.hosts.length; j++) {
                        String node = oneblock.hosts[j];
                        List<OneBlockInfo> blklist = nodeToBlocks.get(node);
                        if (blklist == null) {
                            blklist = new ArrayList<OneBlockInfo>();
                            nodeToBlocks.put(node, blklist);
                        }
                        blklist.add(oneblock);
                    }
                }
            }
        }

        long getLength() {
            return fileSize;
        }

        OneBlockInfo[] getBlocks() {
            return blocks;
        }
    }

    /**
     * information about one block from the File System
     */
    private static class OneBlockInfo {
        Path onepath; // name of this file
        long offset; // offset in file
        long length; // length of this block
        String[] hosts; // nodes on which this block resides
        String[] racks; // network topology of hosts

        OneBlockInfo(Path path, long offset, long len, String[] hosts, String[] topologyPaths) {
            this.onepath = path;
            this.offset = offset;
            this.hosts = hosts;
            this.length = len;
            assert (hosts.length == topologyPaths.length || topologyPaths.length == 0);

            // if the file system does not have any rack information, then
            // use dummy rack location.
            if (topologyPaths.length == 0) {
                topologyPaths = new String[hosts.length];
                for (int i = 0; i < topologyPaths.length; i++) {
                    topologyPaths[i] = (new NodeBase(hosts[i], NetworkTopology.DEFAULT_RACK)).toString();
                }
            }

            // The topology paths have the host name included as the last 
            // component. Strip it.
            this.racks = new String[topologyPaths.length];
            for (int i = 0; i < topologyPaths.length; i++) {
                this.racks[i] = (new NodeBase(topologyPaths[i])).getNetworkLocation();
            }
        }
    }

    private static void addHostToRack(HashMap<String, Set<String>> rackToNodes, String rack, String host) {
        Set<String> hosts = rackToNodes.get(rack);
        if (hosts == null) {
            hosts = new HashSet<String>();
            rackToNodes.put(rack, hosts);
        }
        hosts.add(host);
    }

    private List<String> getHosts(List<String> racks) {
        List<String> hosts = new ArrayList<String>();
        for (String rack : racks) {
            hosts.addAll(rackToNodes.get(rack));
        }
        return hosts;
    }

    /**
     * Accept a path only if any one of filters given in the
     * constructor do. 
     */
    private static class MultiPathFilter implements PathFilter {
        private List<PathFilter> filters;

        public MultiPathFilter() {
            this.filters = new ArrayList<PathFilter>();
        }

        public MultiPathFilter(List<PathFilter> filters) {
            this.filters = filters;
        }

        public void add(PathFilter one) {
            filters.add(one);
        }

        public boolean accept(Path path) {
            for (PathFilter filter : filters) {
                if (filter.accept(path)) {
                    return true;
                }
            }
            return false;
        }

        public String toString() {
            StringBuffer buf = new StringBuffer();
            buf.append("[");
            for (PathFilter f : filters) {
                buf.append(f);
                buf.append(",");
            }
            buf.append("]");
            return buf.toString();
        }
    }
}