net.sf.taverna.t2.biomart.views.TestBiomartActivityContextualView.java Source code

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Here is the source code for net.sf.taverna.t2.biomart.views.TestBiomartActivityContextualView.java

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package net.sf.taverna.t2.biomart.views;
/*
 * Licensed to the Apache Software Foundation (ASF) under one or more
 * contributor license agreements.  See the NOTICE file distributed with
 * this work for additional information regarding copyright ownership.
 * The ASF licenses this file to You under the Apache License, Version 2.0
 * (the "License"); you may not use this file except in compliance with
 * the License.  You may obtain a copy of the License at
 *
 *      http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */

import static org.junit.Assert.assertNotNull;
import static org.junit.Assert.assertTrue;

import java.io.IOException;
import java.io.InputStream;
import java.net.URI;

import net.sf.taverna.t2.activities.biomart.actions.BiomartActivityConfigurationAction;
import net.sf.taverna.t2.activities.biomart.views.BiomartActivityContextualView;

import org.jdom.Document;
import org.jdom.Element;
import org.jdom.input.SAXBuilder;
import org.jdom.output.XMLOutputter;
import org.junit.Before;
import org.junit.Ignore;
import org.junit.Test;

import org.apache.taverna.scufl2.api.activity.Activity;
import org.apache.taverna.scufl2.api.configurations.Configuration;
import org.apache.taverna.scufl2.api.profiles.Profile;

import com.fasterxml.jackson.databind.node.ObjectNode;

public class TestBiomartActivityContextualView {
    Activity activity;

    @Before
    public void setup() throws Exception {
        activity = new Activity();
        activity.setParent(new Profile());

        Element el = getQueryElement("biomart-query.xml");

        Configuration configuration = new Configuration();
        configuration.setType(URI.create("http://ns.taverna.org.uk/2010/activity/biomart").resolve("#Config"));
        String queryText = new XMLOutputter().outputString(new Document(el));
        ((ObjectNode) configuration.getJson()).put("martQuery", queryText);

        configuration.setConfigures(activity);
    }

    @Test
    @Ignore
    public void testConfigurationAction() throws Exception {
        BiomartActivityContextualView view = new BiomartActivityContextualView(activity, null, null, null, null,
                null, null, null);
        assertNotNull("The view should provide a configuration action", view.getConfigureAction(null));
        assertTrue("The configuration action should be an instance of BiomartActivityConfigurationAction",
                view.getConfigureAction(null) instanceof BiomartActivityConfigurationAction);
    }

    private Element getQueryElement(String resourceName) throws Exception {
        InputStream inStream = TestBiomartActivityContextualView.class.getResourceAsStream("/" + resourceName);

        if (inStream == null)
            throw new IOException("Unable to find resource for:" + resourceName);
        SAXBuilder builder = new SAXBuilder();
        return builder.build(inStream).detachRootElement();
    }

    private void run() throws Exception {
        setup();
        BiomartActivityContextualView view = new BiomartActivityContextualView(activity, null, null, null, null,
                null, null, null);
        view.setVisible(true);
    }

    public static void main(String[] args) throws Exception {
        new TestBiomartActivityContextualView().run();
    }

}