net.sf.taverna.t2.activities.soaplab.SoaplabActivityTest.java Source code

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Here is the source code for net.sf.taverna.t2.activities.soaplab.SoaplabActivityTest.java

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package net.sf.taverna.t2.activities.soaplab;
/*
 * Licensed to the Apache Software Foundation (ASF) under one or more
 * contributor license agreements.  See the NOTICE file distributed with
 * this work for additional information regarding copyright ownership.
 * The ASF licenses this file to You under the Apache License, Version 2.0
 * (the "License"); you may not use this file except in compliance with
 * the License.  You may obtain a copy of the License at
 *
 *      http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */

import static org.junit.Assert.assertEquals;
import static org.junit.Assert.assertFalse;
import static org.junit.Assert.assertNotNull;
import static org.junit.Assert.assertTrue;

import java.util.HashMap;
import java.util.HashSet;
import java.util.Map;
import java.util.Set;

import net.sf.taverna.t2.activities.testutils.ActivityInvoker;
import net.sf.taverna.t2.workflowmodel.processor.activity.ActivityOutputPort;

import org.junit.Before;
import org.junit.Ignore;
import org.junit.Test;

import com.fasterxml.jackson.databind.node.JsonNodeFactory;
import com.fasterxml.jackson.databind.node.ObjectNode;

/**
 * Unit tests for SoaplabActivity.
 *
 * @author David Withers
 */
public class SoaplabActivityTest {

    private SoaplabActivity activity;

    private ObjectNode configurationBean;

    @Ignore("Integration test")
    @Before
    public void setUp() throws Exception {
        activity = new SoaplabActivity();
        configurationBean = JsonNodeFactory.instance.objectNode();
        configurationBean.put("endpoint", "http://www.ebi.ac.uk/soaplab/emboss4/services/utils_misc.embossversion");
    }

    @Ignore("Integration test")
    @Test
    public void testExecuteAsynch() throws Exception {
        Map<String, Object> inputs = new HashMap<String, Object>();
        // inputs.put("full", "true");
        Map<String, Class<?>> expectedOutputs = new HashMap<String, Class<?>>();
        expectedOutputs.put("report", String.class);
        expectedOutputs.put("outfile", String.class);

        activity.configure(configurationBean);

        Map<String, Object> outputs = ActivityInvoker.invokeAsyncActivity(activity, inputs, expectedOutputs);
        assertTrue(outputs.containsKey("report"));
        // assertTrue(outputs.get("report") instanceof String);
        assertTrue(outputs.containsKey("outfile"));
        assertTrue(outputs.get("outfile") instanceof String);
        System.out.println(outputs.get("outfile"));

        // test with polling
        configurationBean.put("pollingInterval", 5);
        configurationBean.put("PollingIntervalMax", 6);
        configurationBean.put("PollingBackoff", 1.2);
        activity.configure(configurationBean);

        outputs = ActivityInvoker.invokeAsyncActivity(activity, inputs, expectedOutputs);
        assertTrue(outputs.containsKey("report"));
        assertTrue(outputs.containsKey("outfile"));
    }

    @Ignore("Integration test")
    @Test
    public void testSoaplabActivity() {
        assertNotNull(new SoaplabActivity());
    }

    @Ignore("Integration test")
    @Test
    public void testConfigureSoaplabActivityConfigurationBean() throws Exception {
        Set<String> expectedOutputs = new HashSet<String>();
        expectedOutputs.add("report");
        expectedOutputs.add("outfile");

        activity.configure(configurationBean);
        Set<ActivityOutputPort> ports = activity.getOutputPorts();
        assertEquals(expectedOutputs.size(), ports.size());
        for (ActivityOutputPort outputPort : ports) {
            assertTrue("Wrong output : " + outputPort.getName(), expectedOutputs.remove(outputPort.getName()));
        }
    }

    @Ignore("Integration test")
    @Test
    public void testIsPollingDefined() throws Exception {
        assertFalse(activity.isPollingDefined());
        activity.configure(configurationBean);
        assertFalse(activity.isPollingDefined());
        configurationBean.put("pollingInterval", 1000);
        activity.configure(configurationBean);
        assertTrue(activity.isPollingDefined());
    }

}