net.sf.mzmine.modules.peaklistmethods.dataanalysis.rtmzplots.RTMZRenderer.java Source code

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Here is the source code for net.sf.mzmine.modules.peaklistmethods.dataanalysis.rtmzplots.RTMZRenderer.java

Source

/*
 * Copyright 2006-2014 The MZmine 2 Development Team
 *
 * This file is part of MZmine 2.
 *
 * MZmine 2 is free software; you can redistribute it and/or modify it under the
 * terms of the GNU General Public License as published by the Free Software
 * Foundation; either version 2 of the License, or (at your option) any later
 * version.
 *
 * MZmine 2 is distributed in the hope that it will be useful, but WITHOUT ANY
 * WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
 * A PARTICULAR PURPOSE. See the GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License along with
 * MZmine 2; if not, write to the Free Software Foundation, Inc., 51 Franklin St,
 * Fifth Floor, Boston, MA 02110-1301 USA
 */

package net.sf.mzmine.modules.peaklistmethods.dataanalysis.rtmzplots;

import java.awt.Color;
import java.awt.Paint;
import java.awt.Shape;
import java.awt.geom.Ellipse2D;

import org.jfree.chart.renderer.PaintScale;
import org.jfree.chart.renderer.xy.XYLineAndShapeRenderer;
import org.jfree.data.xy.AbstractXYZDataset;

public class RTMZRenderer extends XYLineAndShapeRenderer {

    private static final Shape dataPointsShape = new Ellipse2D.Double(-3, -3, 7, 7);

    private AbstractXYZDataset dataset;
    private PaintScale paintScale;

    public RTMZRenderer(AbstractXYZDataset dataset, PaintScale paintScale) {
        super(false, true);
        this.dataset = dataset;
        this.paintScale = paintScale;
        this.setSeriesShape(0, dataPointsShape);
    }

    @Override
    public Paint getItemPaint(int series, int item) {

        double cv = dataset.getZValue(series, item);
        if (Double.isNaN(cv))
            return new Color(255, 0, 0);

        return paintScale.getPaint(cv);

    }

    void setPaintScale(PaintScale paintScale) {
        this.paintScale = paintScale;
    }

}