module.script.probcp.CreateProbcp.java Source code

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Here is the source code for module.script.probcp.CreateProbcp.java

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/**
 * EpiMed - Information system for bioinformatics developments in the field of epigenetics
 * 
 * This software is a computer program which performs the data management 
 * for EpiMed platform of the Institute for Advances Biosciences (IAB)
 *
 * Copyright University of Grenoble Alps (UGA)
 * GNU GENERAL PUBLIC LICENSE
 * Please check LICENSE file
 *
 * Author: Ekaterina Bourova-Flin 
 *
 */
package module.script.probcp;

import java.text.ParseException;
import java.text.SimpleDateFormat;
import java.util.ArrayList;
import java.util.Date;
import java.util.List;

import org.bson.Document;
import org.hibernate.Session;
import org.hibernate.SessionFactory;

import com.mongodb.MongoClient;
import com.mongodb.client.MongoCollection;
import com.mongodb.client.MongoDatabase;
import com.mongodb.client.model.Filters;
import com.mongodb.client.model.Projections;

import config.HibernateUtil;
import config.MongoUtil;
import module.BaseModule;

public class CreateProbcp extends BaseModule {

    SimpleDateFormat dateFormat = new SimpleDateFormat("yyyy-MM-dd");

    @SuppressWarnings({ "unchecked" })
    public CreateProbcp() {

        // ===== Session Mongo =====

        MongoClient mongoClient = MongoUtil.buildMongoClient();
        MongoDatabase db = mongoClient.getDatabase("epimed_experiments");
        // MongoDatabase db = mongoClient.getDatabase("geo");

        MongoCollection<Document> collectionSeries = db.getCollection("series");

        Date submissionDate = null;
        try {
            submissionDate = dateFormat.parse("2017-03-20");
        } catch (ParseException e) {
            // TODO Auto-generated catch block
            e.printStackTrace();
        }

        List<String> platforms = new ArrayList<String>();
        platforms.add("proteomics");

        Document docSeries = new Document();
        docSeries.append("_id", "PROBCP").append("title", "Breast cancer proteomics").append("platforms", platforms)
                .append("submission_date", submissionDate).append("last_update", submissionDate)
                .append("import_date", new Date());

        System.out.println(docSeries);
        collectionSeries.insertOne(docSeries);

        mongoClient.close();
    }

    /** =============================================================== */

    public static void main(String[] args) {
        new CreateProbcp();
    }

    /** ============================================================== */

}